Wall clock time and date at job start Mon Mar 30 2020 06:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00180 * 2 1 4 4 H 1.48505 * 109.46973 * 269.99676 * 3 2 1 5 5 H 1.48502 * 109.47380 * 29.99765 * 3 2 1 6 6 H 1.48497 * 109.47463 * 149.99827 * 3 2 1 7 7 C 1.37884 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99848 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99608 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47027 * 180.02562 * 9 7 2 11 11 C 1.53113 * 109.52360 * 174.99954 * 10 9 7 12 12 C 1.53043 * 109.27906 * 177.62237 * 11 10 9 13 13 N 1.46848 * 109.52215 * 300.82172 * 12 11 10 14 14 C 1.46898 * 110.99765 * 185.83900 * 13 12 11 15 15 C 1.53006 * 109.47006 * 169.99646 * 14 13 12 16 16 H 1.08998 * 115.54488 * 29.33289 * 15 14 13 17 17 C 1.52994 * 117.49772 * 174.99905 * 15 14 13 18 18 C 1.52994 * 60.00090 * 107.49345 * 17 15 14 19 19 F 1.39900 * 117.49787 * 252.51279 * 18 17 15 20 20 F 1.39896 * 117.50556 * 107.48796 * 18 17 15 21 21 C 1.46844 * 111.19971 * 61.73818 * 13 12 11 22 22 C 1.53042 * 109.52548 * 298.26097 * 21 13 12 23 23 H 0.96996 * 120.00099 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47420 * 60.00376 * 9 7 2 25 25 H 1.08998 * 109.47449 * 299.99691 * 9 7 2 26 26 H 1.08998 * 109.52170 * 54.86776 * 10 9 7 27 27 H 1.09002 * 109.50807 * 57.68455 * 11 10 9 28 28 H 1.08997 * 109.53546 * 297.58335 * 11 10 9 29 29 H 1.08996 * 109.46221 * 180.80466 * 12 11 10 30 30 H 1.08995 * 109.45093 * 60.83157 * 12 11 10 31 31 H 1.09001 * 109.47062 * 49.99900 * 14 13 12 32 32 H 1.08993 * 109.47084 * 289.99347 * 14 13 12 33 33 H 1.09001 * 117.49513 * 214.98214 * 17 15 14 34 34 H 1.09000 * 117.50338 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.45974 * 58.27652 * 21 13 12 36 36 H 1.09003 * 109.46302 * 178.23916 * 21 13 12 37 37 H 1.09005 * 109.49739 * 299.23563 * 22 21 13 38 38 H 1.08995 * 109.53521 * 179.14196 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5474 -2.6399 -0.1242 12 6 6.0563 -4.0820 -0.0641 13 7 5.6504 -4.6930 1.2080 14 6 6.2383 -6.0305 1.3609 15 6 6.0036 -6.5307 2.7877 16 1 5.1046 -6.1544 3.2757 17 6 6.4402 -7.9598 3.1159 18 6 7.2348 -6.7724 3.6631 19 9 8.4892 -6.5190 3.0977 20 9 7.1210 -6.4933 5.0292 21 6 4.1879 -4.7439 1.3298 22 6 3.6232 -3.3216 1.3113 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8752 -0.6806 -0.8888 26 1 3.5858 -3.1769 -0.8395 27 1 5.9811 -2.0666 0.6952 28 1 5.8361 -2.1914 -1.0748 29 1 7.1437 -4.0867 -0.1386 30 1 5.6331 -4.6510 -0.8918 31 1 7.3094 -5.9811 1.1648 32 1 5.7707 -6.7158 0.6541 33 1 5.8286 -8.5236 3.8204 34 1 6.8943 -8.5439 2.3154 35 1 3.7735 -5.3101 0.4956 36 1 3.9182 -5.2296 2.2676 37 1 4.0266 -2.7590 2.1533 38 1 2.5365 -3.3599 1.3863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691228585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:26 Heat of formation + Delta-G solvation = -100.018532 kcal Electronic energy + Delta-G solvation = -19606.712932 eV Core-core repulsion = 16312.354697 eV Total energy + Delta-G solvation = -3294.358235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.61456 -48.31788 -40.22387 -37.71980 -35.72326 -34.12071 -31.74111 -30.60379 -27.46454 -24.85673 -24.18523 -23.46251 -22.25815 -21.45039 -20.47176 -18.88107 -18.77946 -17.65695 -16.96699 -16.84122 -16.33615 -15.69982 -15.47977 -15.16068 -14.99279 -14.91323 -14.58845 -14.55086 -14.32566 -14.17529 -13.84732 -13.41330 -13.26146 -13.01316 -12.59543 -12.53744 -12.23660 -12.06682 -11.88770 -11.74115 -11.64207 -11.23630 -10.92785 -10.80854 -10.76266 -10.68991 -9.23557 -8.26198 -6.27960 1.35265 1.37577 1.49359 2.12528 2.20917 2.37804 2.80217 3.09435 3.40631 3.51939 3.69821 4.01889 4.02435 4.06424 4.19421 4.31345 4.45485 4.55646 4.61875 4.63807 4.65476 4.77757 4.83231 4.87502 4.93058 5.02504 5.09613 5.12520 5.24178 5.34198 5.42293 5.52560 5.72751 5.75341 6.14752 6.19736 6.34555 6.79236 7.35925 8.90467 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.004004 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.676277 B = 6991.936860 C = 7097.602499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.250 1.250 7 C -0.518 4.518 8 H 0.036 0.964 9 C -0.007 4.007 10 C -0.071 4.071 11 C -0.109 4.109 12 C 0.065 3.935 13 N -0.549 5.549 14 C 0.081 3.919 15 C -0.146 4.146 16 H 0.131 0.869 17 C -0.138 4.138 18 C 0.166 3.834 19 F -0.172 7.172 20 F -0.178 7.178 21 C 0.063 3.937 22 C -0.098 4.098 23 H 0.264 0.736 24 H 0.013 0.987 25 H 0.014 0.986 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.213 -16.411 3.876 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.174 1.174 7 C -0.556 4.556 8 H 0.054 0.946 9 C -0.044 4.044 10 C -0.090 4.090 11 C -0.147 4.147 12 C -0.063 4.063 13 N -0.274 5.274 14 C -0.046 4.046 15 C -0.165 4.165 16 H 0.148 0.852 17 C -0.176 4.176 18 C 0.129 3.871 19 F -0.153 7.153 20 F -0.159 7.159 21 C -0.064 4.064 22 C -0.136 4.136 23 H 0.073 0.927 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.297 -15.989 4.273 23.227 hybrid contribution -0.509 0.762 -0.393 0.997 sum 15.788 -15.227 3.881 22.275 Atomic orbital electron populations 1.70063 1.08181 1.27898 1.53324 1.25963 0.95529 1.03273 0.94546 0.85724 0.79470 0.78776 0.79074 1.19240 1.21193 1.17410 1.21470 0.91946 0.92935 1.49225 0.94575 1.19578 0.94017 0.94885 0.95926 1.20976 0.95015 0.95972 0.97040 1.21645 0.94530 0.96633 1.01875 1.22040 1.00658 0.94428 0.89145 1.61845 1.09381 1.21096 1.35070 1.21658 1.00871 0.89087 0.92986 1.23764 0.96653 0.99378 0.96719 0.85156 1.24550 0.98607 0.90982 1.03460 1.20537 0.80877 1.09407 0.76244 1.92963 1.43172 1.95369 1.83753 1.92984 1.95881 1.94963 1.32064 1.22097 0.86912 0.96323 1.01092 1.21432 0.99312 0.95406 0.97440 0.92706 0.96851 0.96780 0.93466 0.92121 0.90991 0.89280 0.94428 0.89349 0.91705 0.83960 0.83900 0.94817 0.89684 0.92876 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 2 C 0.00 0.18 5.47 84.66 0.46 0.64 16 3 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.52 -29.84 9.00 25.60 0.23 -29.61 16 8 H 0.04 2.27 7.32 -2.91 -0.02 2.25 16 9 C -0.01 -0.32 3.52 29.85 0.11 -0.21 16 10 C -0.07 -2.75 2.20 -10.72 -0.02 -2.78 16 11 C -0.11 -3.33 5.38 30.65 0.16 -3.16 16 12 C 0.06 1.59 5.46 86.33 0.47 2.06 16 13 N -0.55 -13.66 4.66 -896.36 -4.17 -17.83 16 14 C 0.08 1.49 5.22 86.31 0.45 1.94 16 15 C -0.15 -2.48 5.65 -10.79 -0.06 -2.54 16 16 H 0.13 2.37 6.33 -2.39 -0.02 2.35 16 17 C -0.14 -1.52 10.22 30.59 0.31 -1.21 16 18 C 0.17 3.21 5.20 30.59 0.16 3.37 16 19 F -0.17 -3.83 16.48 44.97 0.74 -3.09 16 20 F -0.18 -4.22 17.60 44.97 0.79 -3.42 16 21 C 0.06 1.74 5.31 86.33 0.46 2.20 16 22 C -0.10 -3.59 5.15 30.65 0.16 -3.43 16 23 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 25 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.09 1.85 8.01 -2.39 -0.02 1.83 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.58 6.90 -2.39 -0.02 1.56 16 32 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 33 H 0.14 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 2.05 6.16 -2.39 -0.01 2.04 16 37 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.05 2.00 7.05 -2.39 -0.02 1.99 16 Total: -1.00 -67.68 306.81 3.41 -64.27 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 0.98 Total: 5.81 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 2.89 Total: -32.71 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.87 Total: -77.89 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.53 Total: -6.51 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -67.68 3.41 -64.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691228585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.749 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds