Wall clock time and date at job start Mon Mar 30 2020 07:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53781 * 113.61241 * 2 1 4 4 C 1.53777 * 87.08325 * 89.11564 * 3 2 1 5 5 C 1.53001 * 113.61589 * 139.97815 * 4 3 2 6 6 N 1.46895 * 109.47114 * 176.52689 * 5 4 3 7 7 C 1.46904 * 111.00177 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46721 * 35.00347 * 7 6 5 9 9 C 1.50695 * 109.47169 * 275.00545 * 7 6 5 10 10 H 1.08007 * 119.99692 * 294.97713 * 9 7 6 11 11 C 1.37876 * 120.00309 * 114.97940 * 9 7 6 12 12 N 1.31510 * 120.00074 * 184.83518 * 11 9 7 13 13 Si 1.86797 * 119.99823 * 4.83107 * 11 9 7 14 14 H 1.48495 * 109.47132 * 84.70569 * 13 11 9 15 15 H 1.48506 * 109.47082 * 204.70633 * 13 11 9 16 16 H 1.48506 * 109.47366 * 324.70226 * 13 11 9 17 17 C 1.50702 * 109.47102 * 154.99792 * 7 6 5 18 18 C 1.38236 * 119.99655 * 44.79955 * 17 7 6 19 19 C 1.38235 * 119.99790 * 179.78416 * 18 17 7 20 20 C 1.38240 * 119.99935 * 0.43648 * 19 18 17 21 21 C 1.38234 * 119.99762 * 359.81572 * 20 19 18 22 22 C 1.38232 * 120.00442 * 359.97438 * 21 20 19 23 23 C 1.53782 * 87.17208 * 25.38827 * 4 3 2 24 24 H 1.09000 * 109.47035 * 60.00362 * 1 2 3 25 25 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47140 * 300.00002 * 1 2 3 27 27 H 1.08996 * 112.84709 * 228.80074 * 2 1 3 28 28 H 1.09005 * 113.61596 * 334.56433 * 3 2 1 29 29 H 1.08999 * 113.61217 * 203.66436 * 3 2 1 30 30 H 1.09003 * 113.61550 * 270.79772 * 4 3 2 31 31 H 1.09007 * 109.46592 * 56.53173 * 5 4 3 32 32 H 1.08991 * 109.47252 * 296.52843 * 5 4 3 33 33 H 1.00900 * 111.00363 * 56.04736 * 6 5 4 34 34 H 0.97003 * 120.00267 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.00288 * 359.97438 * 18 17 7 36 36 H 1.08001 * 120.00390 * 180.27126 * 19 18 17 37 37 H 1.08004 * 120.00292 * 179.83121 * 20 19 18 38 38 H 1.08002 * 119.99917 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00602 * 180.02562 * 22 21 20 40 40 H 1.08997 * 113.61657 * 89.16155 * 23 4 3 41 41 H 1.09000 * 113.61270 * 220.06133 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3469 1.5356 5 6 3.3264 1.9437 2.2162 6 7 3.1445 1.9131 3.6735 7 6 4.3118 2.4802 4.3618 8 1 4.7209 3.2985 3.7692 9 6 5.3607 1.4122 4.5351 10 1 5.1623 0.5577 5.1651 11 6 6.5737 1.5260 3.8895 12 7 7.4521 0.5501 3.9636 13 14 6.9692 3.0662 2.9094 14 1 7.5104 4.1069 3.8200 15 1 7.9789 2.7451 1.8689 16 1 5.7327 3.5710 2.2601 17 6 3.8947 2.9989 5.7139 18 6 3.0699 2.2384 6.5215 19 6 2.6909 2.7122 7.7636 20 6 3.1293 3.9504 8.1943 21 6 3.9498 4.7132 7.3844 22 6 4.3324 4.2375 6.1442 23 6 2.1448 -0.1840 1.3994 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9532 -0.6616 -0.7558 28 1 1.4945 2.1705 -0.4290 29 1 3.1590 1.4427 -0.4009 30 1 1.1574 1.7164 1.9555 31 1 3.4590 2.9748 1.8882 32 1 4.2073 1.3608 1.9477 33 1 2.9553 0.9754 3.9947 34 1 8.3053 0.6299 3.5091 35 1 2.7242 1.2727 6.1834 36 1 2.0501 2.1161 8.3965 37 1 2.8310 4.3218 9.1636 38 1 4.2920 5.6808 7.7207 39 1 4.9737 4.8332 5.5116 40 1 3.1575 -0.5868 1.3819 41 1 1.4923 -0.7069 2.0986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691946758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:25 Heat of formation + Delta-G solvation = 29.890333 kcal Electronic energy + Delta-G solvation = -19300.192710 eV Core-core repulsion = 16565.697276 eV Total energy + Delta-G solvation = -2734.495434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.16335 -38.49508 -35.38710 -32.34715 -31.07195 -30.17394 -29.07290 -26.89376 -25.42196 -24.72376 -22.61454 -21.92347 -20.99265 -19.72758 -18.25964 -17.25986 -16.23966 -15.29754 -14.85651 -14.82645 -14.28814 -14.25409 -13.59140 -13.47152 -13.01405 -12.79082 -12.66975 -12.44001 -12.13431 -12.04403 -11.88378 -11.73207 -11.56091 -11.12635 -10.99389 -10.70655 -10.43186 -10.31455 -10.04707 -9.90580 -9.78108 -9.56483 -9.35943 -8.73730 -8.20188 -7.89985 -7.27337 -6.25009 -4.26856 2.13003 2.20141 3.16564 3.23579 3.25800 4.25153 4.55535 4.75651 4.82211 5.01714 5.05649 5.13481 5.41195 5.53731 5.54762 5.58623 5.71864 5.80960 5.83799 5.89560 5.98928 6.06698 6.08505 6.10105 6.20174 6.25851 6.31482 6.35047 6.44511 6.56870 6.59957 6.68463 6.76829 6.86686 6.93912 7.16047 7.25525 7.41940 7.56037 7.78290 8.04683 8.28437 8.56233 8.80478 9.37079 10.87472 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.007045 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.542756 B = 3973.604247 C = 5174.116381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C -0.134 4.134 4 C -0.102 4.102 5 C 0.073 3.927 6 N -0.685 5.685 7 C 0.200 3.800 8 H 0.053 0.947 9 C -0.532 4.532 10 H 0.077 0.923 11 C 0.080 3.920 12 N -0.889 5.889 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.287 1.287 16 H -0.260 1.260 17 C -0.014 4.014 18 C -0.104 4.104 19 C -0.125 4.125 20 C -0.151 4.151 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.133 4.133 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.333 0.667 34 H 0.266 0.734 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.650 2.882 -3.021 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.172 4.172 4 C -0.121 4.121 5 C -0.056 4.056 6 N -0.314 5.314 7 C 0.092 3.908 8 H 0.071 0.929 9 C -0.571 4.571 10 H 0.095 0.905 11 C -0.124 4.124 12 N -0.525 5.525 13 Si 0.695 3.305 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.185 1.185 17 C -0.015 4.015 18 C -0.122 4.122 19 C -0.143 4.143 20 C -0.170 4.170 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.170 4.170 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.814 3.411 -3.072 11.748 hybrid contribution 1.262 0.035 -0.540 1.373 sum -9.552 3.446 -3.612 10.778 Atomic orbital electron populations 1.21576 0.94319 1.01344 1.01685 1.22324 0.95446 0.97662 0.98254 1.22995 1.00774 0.96492 0.96905 1.22549 0.99641 0.95516 0.94398 1.21760 0.95254 0.99295 0.89330 1.61068 1.40447 1.26568 1.03357 1.18707 0.88475 0.95420 0.88216 0.92940 1.21509 0.98941 1.06404 1.30263 0.90502 1.25098 0.95996 0.95798 0.95546 1.69896 1.07893 1.31662 1.43079 0.87033 0.78546 0.84294 0.80640 1.19799 1.21294 1.18474 1.20268 0.91951 0.91896 0.97412 1.20839 0.98127 0.99702 0.93568 1.21024 1.00679 0.96145 0.96499 1.20840 1.00882 0.95756 0.99481 1.20926 0.99018 0.99355 0.94802 1.20939 1.01233 0.96415 0.96578 1.23079 1.01158 0.96847 0.95918 0.92856 0.92827 0.92348 0.91255 0.91963 0.90382 0.89103 0.92681 0.94616 0.85031 0.92407 0.86703 0.87276 0.87432 0.87298 0.87348 0.89988 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 9.59 37.16 0.36 -1.06 16 2 C -0.12 -1.47 4.55 -89.72 -0.41 -1.88 16 3 C -0.13 -1.80 7.23 -25.92 -0.19 -1.99 16 4 C -0.10 -1.57 3.54 -89.81 -0.32 -1.88 16 5 C 0.07 1.40 5.30 -3.83 -0.02 1.38 16 6 N -0.68 -13.91 5.81 -109.19 -0.63 -14.55 16 7 C 0.20 4.57 2.15 -70.02 -0.15 4.42 16 8 H 0.05 1.25 3.98 -51.93 -0.21 1.04 16 9 C -0.53 -14.18 8.60 -34.44 -0.30 -14.48 16 10 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 12 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 13 Si 0.87 20.76 27.24 -169.99 -4.63 16.13 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -5.90 6.31 56.52 0.36 -5.55 16 17 C -0.01 -0.30 4.93 -104.62 -0.52 -0.82 16 18 C -0.10 -2.05 9.28 -39.58 -0.37 -2.41 16 19 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 20 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 21 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 22 C -0.13 -2.67 9.67 -39.58 -0.38 -3.05 16 23 C -0.13 -1.92 7.20 -25.83 -0.19 -2.11 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.64 7.34 -51.93 -0.38 0.26 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 29 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.09 1.38 7.66 -51.93 -0.40 0.98 16 31 H 0.05 1.08 7.98 -51.93 -0.41 0.66 16 32 H 0.04 0.76 7.73 -51.93 -0.40 0.36 16 33 H 0.33 6.73 7.89 -39.29 -0.31 6.42 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.11 2.19 7.42 -52.49 -0.39 1.80 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.11 2.11 8.00 -52.49 -0.42 1.69 16 40 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 41 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -28.27 330.39 -10.01 -38.28 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.73 Total: 10.36 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -3.77 Total: -29.78 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.14 Total: -39.97 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.63 Total: 16.13 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.27 -10.01 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691946758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.171 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds