Wall clock time and date at job start Mon Mar 30 2020 07:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53781 * 113.61241 * 2 1 4 4 C 1.53777 * 87.08325 * 89.11564 * 3 2 1 5 5 C 1.53001 * 113.61589 * 139.97815 * 4 3 2 6 6 N 1.46895 * 109.47114 * 176.52689 * 5 4 3 7 7 C 1.46904 * 111.00177 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46721 * 35.00347 * 7 6 5 9 9 C 1.50695 * 109.47169 * 275.00545 * 7 6 5 10 10 H 1.08007 * 119.99692 * 294.97713 * 9 7 6 11 11 C 1.37876 * 120.00309 * 114.97940 * 9 7 6 12 12 N 1.31510 * 120.00074 * 184.83518 * 11 9 7 13 13 Si 1.86797 * 119.99823 * 4.83107 * 11 9 7 14 14 H 1.48495 * 109.47132 * 84.70569 * 13 11 9 15 15 H 1.48506 * 109.47082 * 204.70633 * 13 11 9 16 16 H 1.48506 * 109.47366 * 324.70226 * 13 11 9 17 17 C 1.50702 * 109.47102 * 154.99792 * 7 6 5 18 18 C 1.38236 * 119.99655 * 44.79955 * 17 7 6 19 19 C 1.38235 * 119.99790 * 179.78416 * 18 17 7 20 20 C 1.38240 * 119.99935 * 0.43648 * 19 18 17 21 21 C 1.38234 * 119.99762 * 359.81572 * 20 19 18 22 22 C 1.38232 * 120.00442 * 359.97438 * 21 20 19 23 23 C 1.53782 * 87.17208 * 25.38827 * 4 3 2 24 24 H 1.09000 * 109.47035 * 60.00362 * 1 2 3 25 25 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47140 * 300.00002 * 1 2 3 27 27 H 1.08996 * 112.84709 * 228.80074 * 2 1 3 28 28 H 1.09005 * 113.61596 * 334.56433 * 3 2 1 29 29 H 1.08999 * 113.61217 * 203.66436 * 3 2 1 30 30 H 1.09003 * 113.61550 * 270.79772 * 4 3 2 31 31 H 1.09007 * 109.46592 * 56.53173 * 5 4 3 32 32 H 1.08991 * 109.47252 * 296.52843 * 5 4 3 33 33 H 1.00900 * 111.00363 * 56.04736 * 6 5 4 34 34 H 0.97003 * 120.00267 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.00288 * 359.97438 * 18 17 7 36 36 H 1.08001 * 120.00390 * 180.27126 * 19 18 17 37 37 H 1.08004 * 120.00292 * 179.83121 * 20 19 18 38 38 H 1.08002 * 119.99917 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00602 * 180.02562 * 22 21 20 40 40 H 1.08997 * 113.61657 * 89.16155 * 23 4 3 41 41 H 1.09000 * 113.61270 * 220.06133 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 2.0929 1.3469 1.5356 5 6 3.3264 1.9437 2.2162 6 7 3.1445 1.9131 3.6735 7 6 4.3118 2.4802 4.3618 8 1 4.7209 3.2985 3.7692 9 6 5.3607 1.4122 4.5351 10 1 5.1623 0.5577 5.1651 11 6 6.5737 1.5260 3.8895 12 7 7.4521 0.5501 3.9636 13 14 6.9692 3.0662 2.9094 14 1 7.5104 4.1069 3.8200 15 1 7.9789 2.7451 1.8689 16 1 5.7327 3.5710 2.2601 17 6 3.8947 2.9989 5.7139 18 6 3.0699 2.2384 6.5215 19 6 2.6909 2.7122 7.7636 20 6 3.1293 3.9504 8.1943 21 6 3.9498 4.7132 7.3844 22 6 4.3324 4.2375 6.1442 23 6 2.1448 -0.1840 1.3994 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9532 -0.6616 -0.7558 28 1 1.4945 2.1705 -0.4290 29 1 3.1590 1.4427 -0.4009 30 1 1.1574 1.7164 1.9555 31 1 3.4590 2.9748 1.8882 32 1 4.2073 1.3608 1.9477 33 1 2.9553 0.9754 3.9947 34 1 8.3053 0.6299 3.5091 35 1 2.7242 1.2727 6.1834 36 1 2.0501 2.1161 8.3965 37 1 2.8310 4.3218 9.1636 38 1 4.2920 5.6808 7.7207 39 1 4.9737 4.8332 5.5116 40 1 3.1575 -0.5868 1.3819 41 1 1.4923 -0.7069 2.0986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691946758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:25 Heat of formation + Delta-G solvation = 14.722526 kcal Electronic energy + Delta-G solvation = -19300.850436 eV Core-core repulsion = 16565.697276 eV Total energy + Delta-G solvation = -2735.153160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42825 -39.90360 -37.04433 -34.36784 -32.56367 -31.59611 -30.27289 -28.58154 -26.61711 -26.23351 -24.23676 -23.32643 -22.35216 -21.37004 -19.41757 -19.27610 -17.69200 -16.81230 -16.58601 -16.14533 -15.80970 -15.58494 -14.99516 -14.93982 -14.60262 -14.24498 -14.07573 -13.95093 -13.77843 -13.46866 -13.15996 -13.02945 -12.91036 -12.72389 -12.67685 -11.99204 -11.92454 -11.83872 -11.62500 -11.33280 -11.25101 -10.99112 -10.92910 -10.68064 -9.63607 -9.42868 -9.01261 -8.40225 -6.44711 0.68632 0.75072 1.23718 1.24971 1.32831 2.21940 2.91343 3.17472 3.51502 3.71216 3.82944 3.90610 4.01928 4.15602 4.29319 4.39098 4.50291 4.52700 4.59514 4.66603 4.71326 4.80473 4.87422 4.90157 4.92579 4.94579 5.03026 5.07343 5.11116 5.20763 5.30337 5.36893 5.39400 5.43464 5.51496 5.70077 5.75455 5.80186 5.97913 6.06969 6.32556 6.44003 6.62195 6.77979 7.22714 8.76046 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.007045 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.542756 B = 3973.604247 C = 5174.116381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 C -0.130 4.130 4 C -0.100 4.100 5 C 0.075 3.925 6 N -0.673 5.673 7 C 0.207 3.793 8 H 0.045 0.955 9 C -0.526 4.526 10 H 0.035 0.965 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.925 3.075 14 H -0.264 1.264 15 H -0.286 1.286 16 H -0.244 1.244 17 C -0.049 4.049 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.138 4.138 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.005 0.995 33 H 0.331 0.669 34 H 0.266 0.734 35 H 0.108 0.892 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 4.712 -2.709 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 C -0.168 4.168 4 C -0.118 4.118 5 C -0.055 4.055 6 N -0.302 5.302 7 C 0.098 3.902 8 H 0.062 0.938 9 C -0.565 4.565 10 H 0.054 0.946 11 C -0.173 4.173 12 N -0.578 5.578 13 Si 0.749 3.251 14 H -0.189 1.189 15 H -0.212 1.212 16 H -0.169 1.169 17 C -0.050 4.050 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.173 4.173 23 C -0.175 4.175 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.023 0.977 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.940 5.251 -2.759 14.235 hybrid contribution 1.842 -0.569 -0.502 1.992 sum -11.098 4.682 -3.261 12.479 Atomic orbital electron populations 1.21574 0.92469 1.02287 1.02301 1.22298 0.96785 0.96797 0.96549 1.22989 1.00946 0.97877 0.95005 1.22524 0.97908 0.95788 0.95606 1.21812 0.96132 0.98801 0.88752 1.61084 1.38794 1.26263 1.04033 1.18549 0.88086 0.93852 0.89668 0.93752 1.21665 0.99971 1.06288 1.28603 0.94644 1.25855 0.95942 0.98672 0.96869 1.70036 1.08634 1.33934 1.45150 0.86106 0.78816 0.80749 0.79417 1.18920 1.21172 1.16852 1.20232 0.94276 0.93507 0.96953 1.20931 0.98608 0.99568 0.94882 1.21393 1.00373 0.96875 0.95584 1.21337 0.99161 0.94871 1.00666 1.21312 0.98331 1.00691 0.93578 1.21117 1.01853 0.96168 0.98139 1.23055 1.00273 0.96176 0.98039 0.91326 0.91799 0.92616 0.90547 0.90126 0.91222 0.88258 0.93048 0.97659 0.85226 0.92446 0.87363 0.84212 0.83447 0.84057 0.87509 0.92370 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.59 71.98 0.69 -1.72 16 2 C -0.11 -2.46 4.55 -10.21 -0.05 -2.51 16 3 C -0.13 -3.33 7.23 31.12 0.23 -3.11 16 4 C -0.10 -3.01 3.54 -10.27 -0.04 -3.05 16 5 C 0.07 2.91 5.30 86.30 0.46 3.36 16 6 N -0.67 -28.07 5.81 -499.36 -2.90 -30.97 16 7 C 0.21 9.73 2.15 43.42 0.09 9.83 16 8 H 0.04 2.14 3.98 -2.39 -0.01 2.13 16 9 C -0.53 -29.44 8.60 25.60 0.22 -29.22 16 10 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 11 C 0.03 1.50 5.47 84.65 0.46 1.96 16 12 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 13 Si 0.92 43.92 27.24 68.60 1.87 45.78 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 16 H -0.24 -10.86 6.31 99.48 0.63 -10.23 16 17 C -0.05 -2.11 4.93 -19.86 -0.10 -2.20 16 18 C -0.12 -4.75 9.28 22.27 0.21 -4.55 16 19 C -0.12 -3.98 10.05 22.27 0.22 -3.75 16 20 C -0.14 -4.15 10.05 22.27 0.22 -3.93 16 21 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 22 C -0.15 -6.04 9.67 22.27 0.22 -5.82 16 23 C -0.14 -4.00 7.20 31.18 0.22 -3.78 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.05 1.08 7.34 -2.39 -0.02 1.06 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.78 8.10 -2.38 -0.02 1.76 16 29 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 30 H 0.10 2.87 7.66 -2.39 -0.02 2.85 16 31 H 0.05 2.01 7.98 -2.38 -0.02 1.99 16 32 H 0.01 0.23 7.73 -2.39 -0.02 0.21 16 33 H 0.33 13.99 7.89 -89.69 -0.71 13.28 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.11 4.23 7.42 -2.91 -0.02 4.21 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.11 4.09 8.00 -2.91 -0.02 4.07 16 40 H 0.06 1.95 7.92 -2.39 -0.02 1.93 16 41 H 0.07 1.91 8.10 -2.39 -0.02 1.89 16 Total: -1.00 -63.89 330.39 2.76 -61.13 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.21 Total: 33.80 kcal Atomic # 6 Polarization: -55.40 SS G_CDS: 3.29 Total: -52.12 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.60 Total: -88.60 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.87 Total: 45.78 kcal Total: -63.89 2.76 -61.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691946758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.856 kcal (2) G-P(sol) polarization free energy of solvation -63.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds