Wall clock time and date at job start Mon Mar 30 2020 07:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 C 1.50704 * 109.47501 * 239.99432 * 2 1 3 5 5 H 1.07991 * 120.00042 * 239.99984 * 4 2 1 6 6 C 1.37878 * 119.99601 * 60.00077 * 4 2 1 7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47456 * 119.99785 * 8 6 4 11 11 H 1.48501 * 109.46900 * 239.99992 * 8 6 4 12 12 N 1.46901 * 109.47256 * 119.99547 * 2 1 3 13 13 C 1.46896 * 110.99948 * 58.95285 * 12 2 1 14 14 C 1.46903 * 111.00064 * 295.00142 * 12 2 1 15 15 C 1.53003 * 109.47081 * 288.33275 * 14 12 2 16 16 H 1.08994 * 110.67473 * 53.73294 * 15 14 12 17 17 C 1.54887 * 110.75405 * 176.97181 * 15 14 12 18 18 C 1.54270 * 104.19381 * 156.43783 * 17 15 14 19 19 H 1.09002 * 117.41324 * 116.36686 * 18 17 15 20 20 C 1.53875 * 106.60009 * 336.38919 * 18 17 15 21 21 H 1.08998 * 121.32990 * 138.06223 * 20 18 17 22 22 C 1.54274 * 106.59696 * 359.97438 * 20 18 17 23 23 C 1.52995 * 59.81192 * 246.60676 * 20 18 17 24 24 F 1.39895 * 117.46141 * 252.40264 * 23 20 18 25 25 F 1.39904 * 117.46163 * 107.60027 * 23 20 18 26 26 H 1.08998 * 109.47736 * 300.00437 * 1 2 3 27 27 H 1.09003 * 109.47427 * 60.00692 * 1 2 3 28 28 H 1.09006 * 109.46905 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00218 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47203 * 290.09299 * 13 12 2 31 31 H 1.08995 * 109.47122 * 50.09452 * 13 12 2 32 32 H 1.09000 * 109.46957 * 170.09143 * 13 12 2 33 33 H 1.08997 * 109.47154 * 168.32877 * 14 12 2 34 34 H 1.09002 * 109.46976 * 48.32578 * 14 12 2 35 35 H 1.09001 * 110.48962 * 37.76308 * 17 15 14 36 36 H 1.08998 * 110.60336 * 275.17010 * 17 15 14 37 37 H 1.08993 * 110.48588 * 264.92948 * 22 20 18 38 38 H 1.08998 * 110.59688 * 142.34039 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1662 -1.5870 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.4839 1.3172 2.5198 16 1 2.3967 1.9076 1.6078 17 6 2.0634 2.1508 3.7557 18 6 3.3053 3.0092 4.0733 19 1 3.2035 4.0909 3.9854 20 6 4.5156 2.2686 3.4780 21 1 5.3053 2.8046 2.9517 22 6 3.9671 0.9855 2.8200 23 6 4.3755 2.4196 4.9941 24 9 5.2386 3.3143 5.6357 25 9 4.0374 1.2773 5.7277 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1610 -3.4845 30 1 0.4558 -2.0743 1.4407 31 1 1.7235 -2.5632 0.2909 32 1 2.0411 -2.6170 2.0414 33 1 1.8362 -0.5877 3.2897 34 1 0.5908 0.2990 2.3781 35 1 1.8273 1.4965 4.5949 36 1 1.2109 2.7868 3.5174 37 1 4.0386 0.1434 3.5082 38 1 4.5035 0.7689 1.8963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693103177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:10 Heat of formation + Delta-G solvation = -66.951164 kcal Electronic energy + Delta-G solvation = -20179.650203 eV Core-core repulsion = 16886.725876 eV Total energy + Delta-G solvation = -3292.924327 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.64352 -47.31528 -39.20464 -36.97657 -32.97079 -31.51368 -28.69137 -28.27393 -26.34470 -25.13902 -23.46973 -21.69929 -20.30580 -20.16219 -18.62488 -17.75663 -16.75571 -16.18535 -15.85668 -15.18142 -14.92263 -14.22913 -14.18444 -13.97966 -13.65955 -13.46273 -12.99438 -12.77625 -12.57867 -12.37692 -11.87072 -11.47341 -11.38008 -11.16429 -11.07412 -10.83699 -10.82083 -10.58389 -10.37071 -10.24082 -10.09072 -9.99003 -9.76911 -9.62383 -8.84158 -8.38552 -7.11829 -6.02231 -4.05383 3.00825 3.07145 3.28824 3.37166 3.41429 4.20065 4.27939 4.40940 4.63922 4.91338 5.11453 5.21911 5.30057 5.36638 5.50789 5.54379 5.73498 5.94014 5.95377 6.03840 6.10337 6.16661 6.21830 6.31018 6.44557 6.52179 6.68250 6.76183 6.84678 6.89188 7.14724 7.49601 7.71872 7.84000 8.13619 8.39013 8.61005 9.01315 9.59804 11.04924 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.004856 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.656032 B = 5764.681915 C = 5976.544947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.208 3.792 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.535 5.535 13 C 0.035 3.965 14 C 0.060 3.940 15 C -0.079 4.079 16 H 0.090 0.910 17 C -0.094 4.094 18 C -0.160 4.160 19 H 0.131 0.869 20 C -0.156 4.156 21 H 0.132 0.868 22 C -0.079 4.079 23 C 0.207 3.793 24 F -0.165 7.165 25 F -0.162 7.162 26 H 0.008 0.992 27 H 0.087 0.913 28 H 0.028 0.972 29 H 0.259 0.741 30 H 0.012 0.988 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 2.970 12.187 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.102 3.898 3 H 0.059 0.941 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.258 5.258 13 C -0.113 4.113 14 C -0.069 4.069 15 C -0.097 4.097 16 H 0.108 0.892 17 C -0.132 4.132 18 C -0.179 4.179 19 H 0.149 0.851 20 C -0.175 4.175 21 H 0.150 0.850 22 C -0.116 4.116 23 C 0.171 3.829 24 F -0.146 7.146 25 F -0.142 7.142 26 H 0.027 0.973 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.675 3.043 12.050 12.961 hybrid contribution -0.507 -0.240 -0.564 0.796 sum 3.167 2.804 11.486 12.240 Atomic orbital electron populations 1.22402 1.01117 0.99284 1.00431 1.19328 0.89553 0.94761 0.86144 0.94057 1.21177 1.30381 1.12407 0.89743 0.91912 1.24922 0.95255 0.95135 0.98981 1.69892 1.37154 1.23145 1.23235 0.86502 0.78527 0.79708 0.83034 1.19757 1.21236 1.21103 1.62327 1.59450 1.01786 1.02236 1.22207 0.96273 0.91051 1.01814 1.22018 0.96768 0.94040 0.94078 1.22259 0.93826 0.96203 0.97442 0.89220 1.22067 0.94930 0.97427 0.98808 1.24610 0.93116 1.01220 0.98917 0.85088 1.24770 1.00699 1.01772 0.90293 0.85019 1.21929 0.95620 0.93374 1.00673 1.20338 0.96068 0.80945 0.85574 1.92994 1.70773 1.66954 1.83843 1.92983 1.92168 1.49637 1.79419 0.97263 0.89440 0.95294 0.93115 0.96949 0.90478 0.94062 0.92439 0.94787 0.90652 0.90258 0.90818 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.31 37.15 0.31 -3.75 16 2 C 0.21 4.97 2.24 -68.86 -0.15 4.82 16 3 H 0.04 1.07 6.45 -51.93 -0.34 0.74 16 4 C -0.50 -13.17 7.80 -34.44 -0.27 -13.44 16 5 H 0.06 1.67 6.82 -52.49 -0.36 1.32 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.53 -10.85 4.59 -236.29 -1.08 -11.93 16 13 C 0.04 0.67 8.65 60.06 0.52 1.19 16 14 C 0.06 1.01 4.28 -3.82 -0.02 1.00 16 15 C -0.08 -1.20 2.90 -88.61 -0.26 -1.46 16 16 H 0.09 1.57 6.54 -51.93 -0.34 1.23 16 17 C -0.09 -1.19 5.96 -25.07 -0.15 -1.34 16 18 C -0.16 -1.89 6.92 -89.50 -0.62 -2.51 16 19 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.16 -1.95 6.92 -89.50 -0.62 -2.57 16 21 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 22 C -0.08 -1.13 5.86 -25.05 -0.15 -1.27 16 23 C 0.21 2.69 5.13 -26.73 -0.14 2.56 16 24 F -0.17 -2.21 17.60 2.25 0.04 -2.17 16 25 F -0.16 -2.30 16.19 2.25 0.04 -2.26 16 26 H 0.01 0.18 6.30 -51.93 -0.33 -0.14 16 27 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 28 H 0.03 0.66 6.61 -51.93 -0.34 0.32 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.01 0.23 6.84 -51.93 -0.36 -0.13 16 31 H 0.08 1.60 6.28 -51.93 -0.33 1.27 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 34 H 0.03 0.60 5.98 -51.93 -0.31 0.29 16 35 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.07 7.48 -51.93 -0.39 0.68 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 300.70 15.07 4.53 4.53 Total: -1.00 -27.20 300.70 -7.96 -35.15 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.45 Total: 0.33 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.63 Total: -15.32 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.46 Total: -36.18 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.08 Total: -4.43 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.20 -7.96 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693103177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.798 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds