Wall clock time and date at job start Mon Mar 30 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47173 * 2 1 4 4 C 1.50704 * 109.47501 * 239.99432 * 2 1 3 5 5 H 1.07991 * 120.00042 * 239.99984 * 4 2 1 6 6 C 1.37878 * 119.99601 * 60.00077 * 4 2 1 7 7 N 1.31518 * 120.00238 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47456 * 119.99785 * 8 6 4 11 11 H 1.48501 * 109.46900 * 239.99992 * 8 6 4 12 12 N 1.46901 * 109.47256 * 119.99547 * 2 1 3 13 13 C 1.46896 * 110.99948 * 58.95285 * 12 2 1 14 14 C 1.46903 * 111.00064 * 295.00142 * 12 2 1 15 15 C 1.53003 * 109.47081 * 288.33275 * 14 12 2 16 16 H 1.08994 * 110.67473 * 53.73294 * 15 14 12 17 17 C 1.54887 * 110.75405 * 176.97181 * 15 14 12 18 18 C 1.54270 * 104.19381 * 156.43783 * 17 15 14 19 19 H 1.09002 * 117.41324 * 116.36686 * 18 17 15 20 20 C 1.53875 * 106.60009 * 336.38919 * 18 17 15 21 21 H 1.08998 * 121.32990 * 138.06223 * 20 18 17 22 22 C 1.54274 * 106.59696 * 359.97438 * 20 18 17 23 23 C 1.52995 * 59.81192 * 246.60676 * 20 18 17 24 24 F 1.39895 * 117.46141 * 252.40264 * 23 20 18 25 25 F 1.39904 * 117.46163 * 107.60027 * 23 20 18 26 26 H 1.08998 * 109.47736 * 300.00437 * 1 2 3 27 27 H 1.09003 * 109.47427 * 60.00692 * 1 2 3 28 28 H 1.09006 * 109.46905 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00218 * 179.97438 * 7 6 4 30 30 H 1.08996 * 109.47203 * 290.09299 * 13 12 2 31 31 H 1.08995 * 109.47122 * 50.09452 * 13 12 2 32 32 H 1.09000 * 109.46957 * 170.09143 * 13 12 2 33 33 H 1.08997 * 109.47154 * 168.32877 * 14 12 2 34 34 H 1.09002 * 109.46976 * 48.32578 * 14 12 2 35 35 H 1.09001 * 110.48962 * 37.76308 * 17 15 14 36 36 H 1.08998 * 110.60336 * 275.17010 * 17 15 14 37 37 H 1.08993 * 110.48588 * 264.92948 * 22 20 18 38 38 H 1.08998 * 110.59688 * 142.34039 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1662 -1.5870 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6487 0.0393 2.4181 15 6 2.4839 1.3172 2.5198 16 1 2.3967 1.9076 1.6078 17 6 2.0634 2.1508 3.7557 18 6 3.3053 3.0092 4.0733 19 1 3.2035 4.0909 3.9854 20 6 4.5156 2.2686 3.4780 21 1 5.3053 2.8046 2.9517 22 6 3.9671 0.9855 2.8200 23 6 4.3755 2.4196 4.9941 24 9 5.2386 3.3143 5.6357 25 9 4.0374 1.2773 5.7277 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7088 1.1610 -3.4845 30 1 0.4558 -2.0743 1.4407 31 1 1.7235 -2.5632 0.2909 32 1 2.0411 -2.6170 2.0414 33 1 1.8362 -0.5877 3.2897 34 1 0.5908 0.2990 2.3781 35 1 1.8273 1.4965 4.5949 36 1 1.2109 2.7868 3.5174 37 1 4.0386 0.1434 3.5082 38 1 4.5035 0.7689 1.8963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693103177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:09 Heat of formation + Delta-G solvation = -81.226887 kcal Electronic energy + Delta-G solvation = -20180.269245 eV Core-core repulsion = 16886.725876 eV Total energy + Delta-G solvation = -3293.543368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.67699 -48.35683 -40.37758 -38.54067 -34.82424 -32.89081 -30.50393 -29.35332 -27.83332 -27.03627 -25.08072 -22.90369 -21.63318 -21.16617 -20.20641 -18.78178 -18.24910 -17.71716 -17.01284 -16.83786 -16.20636 -15.88908 -15.60554 -15.09885 -14.99735 -14.59775 -14.49615 -14.13790 -13.98215 -13.70467 -13.42607 -13.16616 -12.72850 -12.68437 -12.62217 -12.43265 -12.37498 -12.23351 -12.02971 -11.73184 -11.60007 -11.46043 -11.05389 -10.78746 -10.76581 -10.42394 -8.75352 -8.07239 -6.16324 1.42368 1.45445 1.55997 2.00615 2.06897 2.45741 3.17821 3.22547 3.24742 3.50936 3.63550 4.04898 4.15743 4.17401 4.35215 4.39400 4.61807 4.65779 4.72429 4.77593 4.82217 4.86444 4.94798 4.97308 5.00952 5.07929 5.10848 5.23521 5.25079 5.33781 5.53431 5.61789 5.77291 5.86574 6.27412 6.55366 6.83413 6.98794 7.52765 8.98966 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.004856 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.656032 B = 5764.681915 C = 5976.544947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.216 3.784 3 H 0.017 0.983 4 C -0.511 4.511 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.542 5.542 13 C 0.038 3.962 14 C 0.061 3.939 15 C -0.078 4.078 16 H 0.064 0.936 17 C -0.088 4.088 18 C -0.146 4.146 19 H 0.155 0.845 20 C -0.158 4.158 21 H 0.147 0.853 22 C -0.075 4.075 23 C 0.202 3.798 24 F -0.167 7.167 25 F -0.170 7.170 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.259 0.741 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 3.001 13.145 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.109 3.891 3 H 0.035 0.965 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.265 5.265 13 C -0.111 4.111 14 C -0.067 4.067 15 C -0.097 4.097 16 H 0.082 0.918 17 C -0.126 4.126 18 C -0.165 4.165 19 H 0.172 0.828 20 C -0.177 4.177 21 H 0.164 0.836 22 C -0.112 4.112 23 C 0.165 3.835 24 F -0.147 7.147 25 F -0.151 7.151 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.949 3.066 13.025 13.951 hybrid contribution -0.583 -0.274 -0.814 1.038 sum 3.366 2.792 12.211 12.971 Atomic orbital electron populations 1.22215 1.00888 0.98905 0.99946 1.19051 0.89511 0.93498 0.87074 0.96550 1.21453 1.30166 1.12249 0.91068 0.92641 1.25620 0.95535 0.95818 1.01627 1.70010 1.38073 1.24257 1.23741 0.85579 0.77991 0.78718 0.79755 1.19323 1.20970 1.20883 1.62241 1.59630 1.02394 1.02283 1.22195 0.96776 0.90417 1.01682 1.22094 0.96772 0.94786 0.93033 1.22161 0.94371 0.95491 0.97691 0.91772 1.22008 0.95708 0.97445 0.97466 1.24699 0.92150 1.02295 0.97376 0.82782 1.24744 1.01699 1.01109 0.90135 0.83562 1.21801 0.94971 0.94433 1.00009 1.20436 0.96719 0.80886 0.85419 1.92991 1.70939 1.66939 1.83878 1.92964 1.92256 1.50206 1.79654 0.95335 0.92247 0.95455 0.93145 0.96686 0.92572 0.91308 0.90571 0.95232 0.90073 0.89007 0.90909 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.31 71.98 0.60 -6.94 16 2 C 0.22 10.40 2.24 44.17 0.10 10.50 16 3 H 0.02 0.88 6.45 -2.39 -0.02 0.87 16 4 C -0.51 -27.27 7.80 25.60 0.20 -27.07 16 5 H 0.06 2.98 6.82 -2.91 -0.02 2.96 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -51.85 11.32 21.45 0.24 -51.60 16 8 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 12 N -0.54 -21.73 4.59 -901.48 -4.14 -25.86 16 13 C 0.04 1.40 8.65 127.69 1.10 2.50 16 14 C 0.06 2.00 4.28 86.30 0.37 2.37 16 15 C -0.08 -2.31 2.90 -9.49 -0.03 -2.34 16 16 H 0.06 2.25 6.54 -2.39 -0.02 2.23 16 17 C -0.09 -2.03 5.96 31.67 0.19 -1.84 16 18 C -0.15 -3.09 6.92 -10.07 -0.07 -3.16 16 19 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 20 C -0.16 -3.67 6.92 -10.07 -0.07 -3.74 16 21 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 22 C -0.07 -2.07 5.86 31.68 0.19 -1.89 16 23 C 0.20 4.81 5.13 30.59 0.16 4.97 16 24 F -0.17 -4.11 17.60 44.97 0.79 -3.32 16 25 F -0.17 -4.52 16.19 44.97 0.73 -3.80 16 26 H 0.03 1.18 6.30 -2.39 -0.02 1.17 16 27 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 28 H 0.03 1.24 6.61 -2.38 -0.02 1.23 16 29 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.01 0.53 6.84 -2.39 -0.02 0.52 16 31 H 0.06 2.30 6.28 -2.39 -0.02 2.29 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.22 7.90 -2.39 -0.02 2.20 16 34 H 0.03 1.00 5.98 -2.39 -0.01 0.99 16 35 H 0.08 1.80 7.56 -2.39 -0.02 1.79 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.02 7.48 -2.39 -0.02 2.00 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -57.55 300.70 3.89 -53.66 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.06 Total: 11.29 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.18 Total: -25.52 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -3.89 Total: -77.47 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 1.52 Total: -7.12 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.55 3.89 -53.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693103177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.567 kcal (2) G-P(sol) polarization free energy of solvation -57.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds