Wall clock time and date at job start Mon Mar 30 2020 06:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 H 1.08997 * 109.46745 * 174.06232 * 3 2 1 5 5 C 1.50699 * 109.47201 * 54.06447 * 3 2 1 6 6 H 1.07995 * 119.99981 * 239.99818 * 5 3 2 7 7 C 1.37880 * 119.99687 * 59.99730 * 5 3 2 8 8 N 1.31515 * 120.00390 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47461 * 119.99904 * 9 7 5 12 12 H 1.48503 * 109.47002 * 240.00258 * 9 7 5 13 13 N 1.46896 * 109.47070 * 294.06356 * 3 2 1 14 14 C 1.46903 * 111.00089 * 275.47231 * 13 3 2 15 15 C 1.52997 * 109.47357 * 176.66477 * 14 13 3 16 16 H 1.09003 * 110.67416 * 51.76183 * 15 14 13 17 17 C 1.54889 * 110.76040 * 175.00078 * 15 14 13 18 18 C 1.54256 * 104.19759 * 156.25481 * 17 15 14 19 19 H 1.09003 * 117.76089 * 116.74791 * 18 17 15 20 20 C 1.53876 * 106.60447 * 336.38891 * 18 17 15 21 21 H 1.08993 * 121.33041 * 138.62448 * 20 18 17 22 22 C 1.54276 * 106.59301 * 0.02562 * 20 18 17 23 23 C 1.52996 * 59.81164 * 246.60721 * 20 18 17 24 24 F 1.39897 * 117.46539 * 107.59463 * 23 20 18 25 25 F 1.39903 * 117.45846 * 252.42276 * 23 20 18 26 26 H 1.09002 * 109.46661 * 58.59995 * 1 2 3 27 27 H 1.08998 * 109.47569 * 178.59743 * 1 2 3 28 28 H 1.08997 * 109.47459 * 298.60256 * 1 2 3 29 29 H 1.09002 * 109.47133 * 239.99610 * 2 1 3 30 30 H 1.08999 * 109.46648 * 119.99736 * 2 1 3 31 31 H 0.97001 * 119.99584 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00307 * 39.42591 * 13 3 2 33 33 H 1.09004 * 109.47227 * 56.66428 * 14 13 3 34 34 H 1.08999 * 109.46797 * 296.66187 * 14 13 3 35 35 H 1.09004 * 110.48226 * 37.57243 * 17 15 14 36 36 H 1.08998 * 110.59435 * 274.98985 * 17 15 14 37 37 H 1.09000 * 110.48400 * 142.28958 * 22 20 18 38 38 H 1.08999 * 110.48295 * 264.93119 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4443 0.1063 5 6 1.4213 2.1941 1.1504 6 1 0.8146 3.0672 0.9610 7 6 1.6300 1.7670 2.4447 8 7 2.3693 0.7040 2.6753 9 14 0.8625 2.6982 3.8706 10 1 0.0819 3.8483 3.3479 11 1 -0.0388 1.7915 4.6262 12 1 1.9337 3.1948 4.7713 13 7 1.6708 2.0924 -1.2646 14 6 2.6559 1.7995 -2.3143 15 6 2.1957 2.4224 -3.6338 16 1 1.9572 3.4774 -3.4988 17 6 3.2722 2.2392 -4.7323 18 6 2.4826 2.3284 -6.0544 19 1 2.7166 3.1503 -6.7311 20 6 1.0271 1.9544 -5.7235 21 1 0.1892 2.5007 -6.1562 22 6 0.9830 1.6515 -4.2114 23 6 1.8706 1.0449 -6.6191 24 9 2.3059 -0.1696 -6.0781 25 9 1.5663 1.0221 -7.9845 26 1 -0.3633 0.5354 -0.8772 27 1 -0.3634 -1.0273 -0.0252 28 1 -0.3634 0.4919 0.9022 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5162 0.4039 3.5859 32 1 0.7430 1.8207 -1.5535 33 1 2.7484 0.7201 -2.4348 34 1 3.6222 2.2178 -2.0326 35 1 3.7507 1.2643 -4.6386 36 1 4.0153 3.0347 -4.6773 37 1 0.0540 2.0191 -3.7756 38 1 1.0919 0.5817 -4.0333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693348632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:03 Heat of formation + Delta-G solvation = -81.627299 kcal Electronic energy + Delta-G solvation = -19884.137174 eV Core-core repulsion = 16590.576443 eV Total energy + Delta-G solvation = -3293.560732 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.76052 -47.43080 -39.31409 -36.46204 -33.31363 -31.45322 -29.71424 -28.52229 -26.48984 -24.31340 -23.17444 -21.64091 -20.41346 -19.94771 -19.19115 -17.91328 -16.94060 -16.10513 -15.97588 -15.23420 -14.89686 -14.68095 -14.13295 -13.72581 -13.53366 -13.32966 -13.22925 -13.04362 -12.69833 -12.37016 -12.21475 -11.79601 -11.59645 -11.40144 -11.09274 -10.89582 -10.60317 -10.51480 -10.44663 -10.25657 -9.95262 -9.91036 -9.71982 -9.52188 -8.94713 -8.33818 -7.20140 -5.96532 -3.97930 2.87455 2.90012 3.31809 3.40193 3.44859 4.02101 4.10570 4.44893 4.49855 4.82327 4.95103 5.08752 5.19157 5.31792 5.35440 5.43432 5.66413 5.76850 5.84503 5.89395 5.90224 6.07032 6.17480 6.34571 6.36862 6.44007 6.57091 6.58943 6.91015 7.29202 7.30662 7.51366 7.71427 7.90505 8.30060 8.56166 8.64406 9.08154 9.65881 11.10639 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.004204 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.397974 B = 6658.821785 C = 6805.753636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.214 3.786 4 H 0.032 0.968 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.067 3.933 15 C -0.084 4.084 16 H 0.090 0.910 17 C -0.094 4.094 18 C -0.158 4.158 19 H 0.132 0.868 20 C -0.156 4.156 21 H 0.133 0.867 22 C -0.096 4.096 23 C 0.208 3.792 24 F -0.159 7.159 25 F -0.164 7.164 26 H 0.029 0.971 27 H 0.021 0.979 28 H 0.065 0.935 29 H 0.010 0.990 30 H 0.091 0.909 31 H 0.258 0.742 32 H 0.325 0.675 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 1.730 -16.112 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.063 4.063 15 C -0.103 4.103 16 H 0.109 0.891 17 C -0.132 4.132 18 C -0.177 4.177 19 H 0.150 0.850 20 C -0.175 4.175 21 H 0.150 0.850 22 C -0.134 4.134 23 C 0.171 3.829 24 F -0.140 7.140 25 F -0.144 7.144 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.520 2.200 -15.798 15.959 hybrid contribution -0.586 -0.798 0.312 1.038 sum -1.105 1.403 -15.485 15.588 Atomic orbital electron populations 1.21560 0.97705 0.97967 1.01199 1.22100 0.95009 1.01200 1.00181 1.19199 0.96043 0.88618 0.85487 0.94999 1.21106 1.30333 1.11448 0.89754 0.92010 1.24917 0.95598 0.95173 0.98716 1.69897 1.39340 1.24210 1.20162 0.86535 0.79025 0.79911 0.82503 1.19763 1.21278 1.21215 1.60885 1.03917 1.63159 1.03554 1.21880 0.97321 0.96847 0.90263 1.22350 0.92917 1.00946 0.94063 0.89132 1.22053 0.97754 1.03337 0.90021 1.24644 0.97058 0.95831 1.00142 0.84968 1.24664 0.96290 0.99689 0.96820 0.84954 1.22121 1.00242 1.01586 0.89406 1.20311 1.05343 0.80821 0.76427 1.93005 1.90076 1.46237 1.84672 1.93005 1.93532 1.96732 1.31146 0.95221 0.95943 0.91550 0.97084 0.89027 0.93210 0.85649 0.96066 0.91553 0.90349 0.89931 0.89693 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 2 C -0.15 -3.36 5.50 -26.73 -0.15 -3.51 16 3 C 0.21 5.18 2.33 -68.86 -0.16 5.02 16 4 H 0.03 0.86 7.85 -51.93 -0.41 0.45 16 5 C -0.49 -12.98 7.35 -34.44 -0.25 -13.23 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.52 5.22 -17.82 -0.09 1.43 16 8 N -0.90 -25.12 11.39 55.43 0.63 -24.48 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.68 -13.75 6.25 -107.95 -0.67 -14.43 16 14 C 0.07 1.12 4.97 -3.82 -0.02 1.10 16 15 C -0.08 -1.09 3.10 -88.64 -0.28 -1.36 16 16 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 17 C -0.09 -1.04 5.96 -25.08 -0.15 -1.18 16 18 C -0.16 -1.59 6.92 -89.51 -0.62 -2.21 16 19 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 20 C -0.16 -1.64 6.92 -89.50 -0.62 -2.26 16 21 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.10 -1.16 5.36 -25.08 -0.13 -1.30 16 23 C 0.21 2.47 5.13 -26.73 -0.14 2.33 16 24 F -0.16 -2.21 16.20 2.25 0.04 -2.17 16 25 F -0.16 -2.02 17.60 2.25 0.04 -1.98 16 26 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.53 7.04 -51.93 -0.37 1.17 16 29 H 0.01 0.23 7.27 -51.93 -0.38 -0.15 16 30 H 0.09 2.40 6.25 -51.93 -0.32 2.07 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.33 6.20 5.87 -39.29 -0.23 5.97 16 33 H 0.02 0.37 7.10 -51.93 -0.37 0.00 16 34 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 35 H 0.08 0.93 7.56 -51.93 -0.39 0.54 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.08 1.04 7.44 -51.93 -0.39 0.65 16 LS Contribution 306.25 15.07 4.62 4.62 Total: -1.00 -27.64 306.25 -8.32 -35.96 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.68 Total: 3.88 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.26 Total: -17.50 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.04 Total: -38.91 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.64 -8.32 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693348632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.666 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds