Wall clock time and date at job start Mon Mar 30 2020 06:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47114 * 2 1 4 4 H 1.08997 * 109.46745 * 174.06232 * 3 2 1 5 5 C 1.50699 * 109.47201 * 54.06447 * 3 2 1 6 6 H 1.07995 * 119.99981 * 239.99818 * 5 3 2 7 7 C 1.37880 * 119.99687 * 59.99730 * 5 3 2 8 8 N 1.31515 * 120.00390 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47132 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47461 * 119.99904 * 9 7 5 12 12 H 1.48503 * 109.47002 * 240.00258 * 9 7 5 13 13 N 1.46896 * 109.47070 * 294.06356 * 3 2 1 14 14 C 1.46903 * 111.00089 * 275.47231 * 13 3 2 15 15 C 1.52997 * 109.47357 * 176.66477 * 14 13 3 16 16 H 1.09003 * 110.67416 * 51.76183 * 15 14 13 17 17 C 1.54889 * 110.76040 * 175.00078 * 15 14 13 18 18 C 1.54256 * 104.19759 * 156.25481 * 17 15 14 19 19 H 1.09003 * 117.76089 * 116.74791 * 18 17 15 20 20 C 1.53876 * 106.60447 * 336.38891 * 18 17 15 21 21 H 1.08993 * 121.33041 * 138.62448 * 20 18 17 22 22 C 1.54276 * 106.59301 * 0.02562 * 20 18 17 23 23 C 1.52996 * 59.81164 * 246.60721 * 20 18 17 24 24 F 1.39897 * 117.46539 * 107.59463 * 23 20 18 25 25 F 1.39903 * 117.45846 * 252.42276 * 23 20 18 26 26 H 1.09002 * 109.46661 * 58.59995 * 1 2 3 27 27 H 1.08998 * 109.47569 * 178.59743 * 1 2 3 28 28 H 1.08997 * 109.47459 * 298.60256 * 1 2 3 29 29 H 1.09002 * 109.47133 * 239.99610 * 2 1 3 30 30 H 1.08999 * 109.46648 * 119.99736 * 2 1 3 31 31 H 0.97001 * 119.99584 * 179.97438 * 8 7 5 32 32 H 1.00901 * 111.00307 * 39.42591 * 13 3 2 33 33 H 1.09004 * 109.47227 * 56.66428 * 14 13 3 34 34 H 1.08999 * 109.46797 * 296.66187 * 14 13 3 35 35 H 1.09004 * 110.48226 * 37.57243 * 17 15 14 36 36 H 1.08998 * 110.59435 * 274.98985 * 17 15 14 37 37 H 1.09000 * 110.48400 * 142.28958 * 22 20 18 38 38 H 1.08999 * 110.48295 * 264.93119 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1248 1.4443 0.1063 5 6 1.4213 2.1941 1.1504 6 1 0.8146 3.0672 0.9610 7 6 1.6300 1.7670 2.4447 8 7 2.3693 0.7040 2.6753 9 14 0.8625 2.6982 3.8706 10 1 0.0819 3.8483 3.3479 11 1 -0.0388 1.7915 4.6262 12 1 1.9337 3.1948 4.7713 13 7 1.6708 2.0924 -1.2646 14 6 2.6559 1.7995 -2.3143 15 6 2.1957 2.4224 -3.6338 16 1 1.9572 3.4774 -3.4988 17 6 3.2722 2.2392 -4.7323 18 6 2.4826 2.3284 -6.0544 19 1 2.7166 3.1503 -6.7311 20 6 1.0271 1.9544 -5.7235 21 1 0.1892 2.5007 -6.1562 22 6 0.9830 1.6515 -4.2114 23 6 1.8706 1.0449 -6.6191 24 9 2.3059 -0.1696 -6.0781 25 9 1.5663 1.0221 -7.9845 26 1 -0.3633 0.5354 -0.8772 27 1 -0.3634 -1.0273 -0.0252 28 1 -0.3634 0.4919 0.9022 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.5162 0.4039 3.5859 32 1 0.7430 1.8207 -1.5535 33 1 2.7484 0.7201 -2.4348 34 1 3.6222 2.2178 -2.0326 35 1 3.7507 1.2643 -4.6386 36 1 4.0153 3.0347 -4.6773 37 1 0.0540 2.0191 -3.7756 38 1 1.0919 0.5817 -4.0333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693348632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:03 Heat of formation + Delta-G solvation = -96.569933 kcal Electronic energy + Delta-G solvation = -19884.785136 eV Core-core repulsion = 16590.576443 eV Total energy + Delta-G solvation = -3294.208693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.69347 -48.38155 -40.30249 -38.15141 -34.90037 -33.19423 -31.19848 -29.44195 -28.31643 -25.85224 -24.94466 -22.64083 -21.44610 -21.09970 -20.83067 -18.81296 -18.19090 -17.79849 -16.90846 -16.75837 -16.43445 -16.07557 -15.27862 -15.09742 -14.78601 -14.66661 -14.57297 -14.21083 -14.10639 -13.84990 -13.50772 -13.44554 -12.90066 -12.77605 -12.46193 -12.42400 -12.36864 -12.06685 -11.75678 -11.64615 -11.52460 -11.38200 -11.10575 -10.89811 -10.78056 -10.41803 -8.89085 -8.03284 -6.11572 1.43466 1.46566 1.57436 2.00988 2.04239 2.47870 3.18036 3.20602 3.26049 3.59003 3.71282 3.99553 4.10919 4.24475 4.24669 4.44973 4.51773 4.56624 4.61370 4.70433 4.74494 4.84427 4.95690 4.96280 5.02156 5.05640 5.12912 5.22293 5.37401 5.45031 5.50689 5.69933 5.76386 5.87706 6.34756 6.71558 6.91639 7.03362 7.56632 9.02493 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.004204 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.397974 B = 6658.821785 C = 6805.753636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C 0.219 3.781 4 H -0.005 1.005 5 C -0.497 4.497 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.286 1.286 13 N -0.684 5.684 14 C 0.069 3.931 15 C -0.076 4.076 16 H 0.096 0.904 17 C -0.093 4.093 18 C -0.140 4.140 19 H 0.161 0.839 20 C -0.145 4.145 21 H 0.158 0.842 22 C -0.097 4.097 23 C 0.185 3.815 24 F -0.177 7.177 25 F -0.167 7.167 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.333 0.667 33 H 0.011 0.989 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 2.986 -17.372 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.095 4.095 16 H 0.115 0.885 17 C -0.131 4.131 18 C -0.159 4.159 19 H 0.179 0.821 20 C -0.164 4.164 21 H 0.175 0.825 22 C -0.135 4.135 23 C 0.149 3.851 24 F -0.158 7.158 25 F -0.148 7.148 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.519 3.461 -17.077 17.490 hybrid contribution -0.232 -1.218 0.681 1.414 sum -1.751 2.243 -16.396 16.641 Atomic orbital electron populations 1.21448 0.95816 0.99272 1.01020 1.21949 0.96620 1.00195 0.99077 1.18946 0.93581 0.89396 0.87025 0.98720 1.21331 1.30120 1.11314 0.90825 0.92702 1.25609 0.96040 0.95902 1.01044 1.70033 1.40403 1.25417 1.20500 0.85606 0.78187 0.78864 0.79569 1.19123 1.20943 1.21184 1.60753 1.05018 1.62653 1.03102 1.21895 0.96259 0.96568 0.91304 1.22225 0.94052 1.00825 0.92371 0.88545 1.22027 0.97653 1.03438 0.89933 1.24714 0.96340 0.95258 0.99585 0.82105 1.24687 0.97454 0.98947 0.95327 0.82460 1.22079 1.00081 1.00439 0.90873 1.20655 1.07198 0.80777 0.76481 1.92967 1.90391 1.47483 1.84938 1.92993 1.93667 1.96722 1.31400 0.93025 0.94051 0.93838 0.95954 0.92279 0.93322 0.84787 0.97048 0.92589 0.91553 0.88087 0.88961 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.39 71.98 0.68 -4.19 16 2 C -0.14 -6.48 5.50 30.60 0.17 -6.31 16 3 C 0.22 10.79 2.33 44.17 0.10 10.89 16 4 H -0.01 -0.29 7.85 -2.39 -0.02 -0.31 16 5 C -0.50 -26.67 7.35 25.60 0.19 -26.48 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.65 5.22 84.66 0.44 1.09 16 8 N -0.92 -52.71 11.39 21.45 0.24 -52.47 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.68 -27.25 6.25 -495.45 -3.10 -30.34 16 14 C 0.07 2.30 4.97 86.30 0.43 2.73 16 15 C -0.08 -1.83 3.10 -9.51 -0.03 -1.86 16 16 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.09 -1.85 5.96 31.67 0.19 -1.66 16 18 C -0.14 -2.41 6.92 -10.07 -0.07 -2.47 16 19 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 20 C -0.15 -2.64 6.92 -10.07 -0.07 -2.71 16 21 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 22 C -0.10 -2.16 5.36 31.67 0.17 -1.99 16 23 C 0.19 4.05 5.13 30.59 0.16 4.21 16 24 F -0.18 -4.80 16.20 44.97 0.73 -4.07 16 25 F -0.17 -3.80 17.60 44.97 0.79 -3.01 16 26 H 0.05 1.86 6.42 -2.39 -0.02 1.85 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.98 7.04 -2.39 -0.02 1.96 16 29 H 0.02 0.96 7.27 -2.39 -0.02 0.94 16 30 H 0.06 3.16 6.25 -2.39 -0.01 3.15 16 31 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.33 12.29 5.87 -89.69 -0.53 11.77 16 33 H 0.01 0.40 7.10 -2.38 -0.02 0.38 16 34 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 35 H 0.07 1.51 7.56 -2.39 -0.02 1.49 16 36 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.92 8.02 -2.39 -0.02 1.90 16 38 H 0.06 1.57 7.44 -2.39 -0.02 1.56 16 Total: -1.00 -59.90 306.25 3.57 -56.33 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.53 Total: 16.89 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 2.35 Total: -28.76 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.85 Total: -82.81 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 1.52 Total: -7.08 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -59.90 3.57 -56.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693348632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.244 kcal (2) G-P(sol) polarization free energy of solvation -59.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds