Wall clock time and date at job start Mon Mar 30 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.08991 * 109.47229 * 179.81960 * 3 2 1 5 5 C 1.50701 * 109.47058 * 299.82326 * 3 2 1 6 6 H 1.08001 * 120.00091 * 119.99922 * 5 3 2 7 7 C 1.37879 * 120.00150 * 299.99895 * 5 3 2 8 8 N 1.31518 * 119.99491 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00169 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47267 * 89.99935 * 9 7 5 11 11 H 1.48499 * 109.47334 * 209.99898 * 9 7 5 12 12 H 1.48503 * 109.47328 * 330.00094 * 9 7 5 13 13 N 1.46908 * 109.46740 * 59.82035 * 3 2 1 14 14 C 1.46893 * 110.99685 * 85.87872 * 13 3 2 15 15 C 1.53007 * 109.46880 * 175.73871 * 14 13 3 16 16 H 1.09003 * 110.66826 * 51.76801 * 15 14 13 17 17 C 1.54892 * 110.75408 * 174.99498 * 15 14 13 18 18 C 1.54266 * 104.19251 * 156.25806 * 17 15 14 19 19 H 1.08997 * 117.41133 * 117.58573 * 18 17 15 20 20 C 1.53881 * 106.59936 * 336.39218 * 18 17 15 21 21 H 1.09003 * 121.32559 * 138.62813 * 20 18 17 22 22 C 1.54260 * 106.59649 * 359.97438 * 20 18 17 23 23 C 1.52998 * 118.20141 * 272.21371 * 18 17 15 24 24 F 1.39905 * 117.46188 * 201.21722 * 23 18 17 25 25 F 1.39903 * 117.46009 * 346.02056 * 23 18 17 26 26 H 1.08997 * 109.47739 * 295.59328 * 1 2 3 27 27 H 1.09000 * 109.47362 * 55.59796 * 1 2 3 28 28 H 1.09005 * 109.46880 * 175.59396 * 1 2 3 29 29 H 1.09000 * 109.47455 * 240.00272 * 2 1 3 30 30 H 1.08995 * 109.46896 * 119.99695 * 2 1 3 31 31 H 0.96998 * 119.99361 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99476 * 209.82940 * 13 3 2 33 33 H 1.08997 * 109.47223 * 295.73891 * 14 13 3 34 34 H 1.09004 * 109.47703 * 55.74068 * 14 13 3 35 35 H 1.08997 * 110.48997 * 274.93886 * 17 15 14 36 36 H 1.08997 * 110.48616 * 37.58493 * 17 15 14 37 37 H 1.09001 * 110.48966 * 264.93071 * 22 20 18 38 38 H 1.09001 * 110.48698 * 142.28590 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 0.0032 5 6 1.5412 2.1517 -1.2327 6 1 0.9199 3.0299 -1.1363 7 6 1.8779 1.6794 -2.4835 8 7 2.6349 0.6103 -2.6008 9 14 1.2603 2.5587 -4.0114 10 1 2.2400 3.5997 -4.4135 11 1 1.0983 1.5787 -5.1152 12 1 -0.0486 3.1970 -3.7201 13 7 1.5467 2.1363 1.1973 14 6 2.4382 1.9086 2.3424 15 6 1.9519 2.7296 3.5385 16 1 0.8941 2.5458 3.7267 17 6 2.7962 2.4164 4.7988 18 6 2.6372 3.6712 5.6819 19 1 2.1612 3.5436 6.6541 20 6 2.2707 4.8297 4.7377 21 1 1.5129 5.5645 5.0098 22 6 2.2204 4.2386 3.3138 23 6 3.6127 4.8311 5.4725 24 9 3.7711 5.7390 6.5251 25 9 4.7624 4.5786 4.7163 26 1 -0.3634 0.4439 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 -0.3633 -1.0247 -0.0790 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8721 0.2782 -3.4807 32 1 1.4293 3.1227 1.0210 33 1 2.4330 0.8500 2.6020 34 1 3.4514 2.2134 2.0803 35 1 2.4053 1.5373 5.3111 36 1 3.8422 2.2690 4.5302 37 1 3.1735 4.3856 2.8057 38 1 1.4089 4.6889 2.7422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693348644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:06 Heat of formation + Delta-G solvation = -83.332892 kcal Electronic energy + Delta-G solvation = -19790.087842 eV Core-core repulsion = 16496.453150 eV Total energy + Delta-G solvation = -3293.634692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.74368 -47.41323 -39.28718 -36.23497 -33.33145 -31.40497 -29.85610 -28.49324 -26.51931 -24.23389 -23.06706 -21.62555 -20.38260 -19.92772 -18.96889 -17.89575 -16.91982 -16.32081 -15.96410 -15.16255 -14.93091 -14.45536 -14.11746 -13.76876 -13.65832 -13.34423 -13.09427 -13.03113 -12.71815 -12.29081 -12.03607 -11.75331 -11.57420 -11.41967 -10.98064 -10.92625 -10.61545 -10.54330 -10.32326 -10.26921 -9.93131 -9.91015 -9.65753 -9.35616 -8.76780 -8.46312 -7.23288 -6.01800 -4.07361 2.88689 2.91842 3.28951 3.36263 3.39235 4.03199 4.11731 4.40014 4.51293 4.82585 4.96759 5.09381 5.20326 5.29513 5.33221 5.45308 5.67569 5.77697 5.85564 5.90606 5.91774 6.09789 6.20368 6.41515 6.56466 6.58458 6.69125 6.86414 7.23809 7.33334 7.50120 7.74672 7.79584 7.85664 8.27772 8.39660 8.67962 9.02185 9.57538 11.04107 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.004432 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.116983 B = 6316.512428 C = 6723.589808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.068 3.932 15 C -0.084 4.084 16 H 0.089 0.911 17 C -0.094 4.094 18 C -0.158 4.158 19 H 0.132 0.868 20 C -0.154 4.154 21 H 0.132 0.868 22 C -0.096 4.096 23 C 0.207 3.793 24 F -0.164 7.164 25 F -0.159 7.159 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.012 0.988 29 H 0.086 0.914 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.329 0.671 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 5.268 14.900 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.062 4.062 15 C -0.102 4.102 16 H 0.108 0.892 17 C -0.132 4.132 18 C -0.177 4.177 19 H 0.150 0.850 20 C -0.173 4.173 21 H 0.150 0.850 22 C -0.134 4.134 23 C 0.170 3.830 24 F -0.144 7.144 25 F -0.140 7.140 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.104 0.896 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.883 4.645 14.920 15.651 hybrid contribution 0.745 1.177 -0.923 1.671 sum -0.137 5.822 13.998 15.161 Atomic orbital electron populations 1.21445 0.97540 0.97360 1.01295 1.21427 0.94994 0.98306 0.99385 1.19139 0.92917 0.91481 0.85713 0.98260 1.21186 1.31609 1.11925 0.90381 0.92360 1.24886 0.95062 0.94984 0.98916 1.69888 1.36650 1.22725 1.23475 0.86587 0.79223 0.79349 0.82788 1.20840 1.21252 1.19867 1.60735 1.48919 1.15699 1.06244 1.21892 0.94284 0.99030 0.90966 1.22353 1.00458 0.93399 0.94019 0.89229 1.22066 1.01695 0.94800 0.94666 1.24631 0.99303 0.92110 1.01685 0.84993 1.24664 0.94820 1.00903 0.96904 0.84977 1.22127 1.03443 0.95395 0.92387 1.20318 0.81528 0.94757 0.86385 1.93004 1.96275 1.68156 1.56997 1.93009 1.51850 1.93978 1.75149 0.93986 0.92529 0.96850 0.89597 0.97242 0.92976 0.85385 0.91687 0.96060 0.90012 0.90339 0.90331 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 2 C -0.10 -2.45 5.59 -26.73 -0.15 -2.60 16 3 C 0.22 5.23 2.30 -68.86 -0.16 5.07 16 4 H 0.00 -0.01 7.72 -51.93 -0.40 -0.41 16 5 C -0.51 -13.49 7.26 -34.44 -0.25 -13.74 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.94 11.32 55.43 0.63 -24.32 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.69 -13.63 5.64 -107.95 -0.61 -14.24 16 14 C 0.07 1.14 5.02 -3.82 -0.02 1.12 16 15 C -0.08 -1.07 3.10 -88.61 -0.27 -1.35 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 17 C -0.09 -1.04 5.96 -25.07 -0.15 -1.19 16 18 C -0.16 -1.61 6.92 -89.50 -0.62 -2.23 16 19 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.15 -1.64 6.92 -89.50 -0.62 -2.26 16 21 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 22 C -0.10 -1.17 5.36 -25.07 -0.13 -1.31 16 23 C 0.21 2.49 5.13 -26.73 -0.14 2.35 16 24 F -0.16 -2.04 17.60 2.25 0.04 -2.00 16 25 F -0.16 -2.24 16.19 2.25 0.04 -2.21 16 26 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 27 H 0.06 1.35 7.07 -51.93 -0.37 0.98 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 30 H 0.01 0.20 7.60 -51.93 -0.39 -0.19 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 6.39 7.44 -39.29 -0.29 6.10 16 33 H 0.06 1.12 7.60 -51.93 -0.39 0.72 16 34 H 0.02 0.38 7.79 -51.93 -0.40 -0.02 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 37 H 0.08 1.08 7.44 -51.93 -0.39 0.69 16 38 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -27.55 308.67 -8.34 -35.89 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.81 Total: 3.12 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.25 Total: -16.80 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.02 Total: -38.55 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.55 -8.34 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693348644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.444 kcal (2) G-P(sol) polarization free energy of solvation -27.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds