Wall clock time and date at job start Mon Mar 30 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.08991 * 109.47229 * 179.81960 * 3 2 1 5 5 C 1.50701 * 109.47058 * 299.82326 * 3 2 1 6 6 H 1.08001 * 120.00091 * 119.99922 * 5 3 2 7 7 C 1.37879 * 120.00150 * 299.99895 * 5 3 2 8 8 N 1.31518 * 119.99491 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00169 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47267 * 89.99935 * 9 7 5 11 11 H 1.48499 * 109.47334 * 209.99898 * 9 7 5 12 12 H 1.48503 * 109.47328 * 330.00094 * 9 7 5 13 13 N 1.46908 * 109.46740 * 59.82035 * 3 2 1 14 14 C 1.46893 * 110.99685 * 85.87872 * 13 3 2 15 15 C 1.53007 * 109.46880 * 175.73871 * 14 13 3 16 16 H 1.09003 * 110.66826 * 51.76801 * 15 14 13 17 17 C 1.54892 * 110.75408 * 174.99498 * 15 14 13 18 18 C 1.54266 * 104.19251 * 156.25806 * 17 15 14 19 19 H 1.08997 * 117.41133 * 117.58573 * 18 17 15 20 20 C 1.53881 * 106.59936 * 336.39218 * 18 17 15 21 21 H 1.09003 * 121.32559 * 138.62813 * 20 18 17 22 22 C 1.54260 * 106.59649 * 359.97438 * 20 18 17 23 23 C 1.52998 * 118.20141 * 272.21371 * 18 17 15 24 24 F 1.39905 * 117.46188 * 201.21722 * 23 18 17 25 25 F 1.39903 * 117.46009 * 346.02056 * 23 18 17 26 26 H 1.08997 * 109.47739 * 295.59328 * 1 2 3 27 27 H 1.09000 * 109.47362 * 55.59796 * 1 2 3 28 28 H 1.09005 * 109.46880 * 175.59396 * 1 2 3 29 29 H 1.09000 * 109.47455 * 240.00272 * 2 1 3 30 30 H 1.08995 * 109.46896 * 119.99695 * 2 1 3 31 31 H 0.96998 * 119.99361 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99476 * 209.82940 * 13 3 2 33 33 H 1.08997 * 109.47223 * 295.73891 * 14 13 3 34 34 H 1.09004 * 109.47703 * 55.74068 * 14 13 3 35 35 H 1.08997 * 110.48997 * 274.93886 * 17 15 14 36 36 H 1.08997 * 110.48616 * 37.58493 * 17 15 14 37 37 H 1.09001 * 110.48966 * 264.93071 * 22 20 18 38 38 H 1.09001 * 110.48698 * 142.28590 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 0.0032 5 6 1.5412 2.1517 -1.2327 6 1 0.9199 3.0299 -1.1363 7 6 1.8779 1.6794 -2.4835 8 7 2.6349 0.6103 -2.6008 9 14 1.2603 2.5587 -4.0114 10 1 2.2400 3.5997 -4.4135 11 1 1.0983 1.5787 -5.1152 12 1 -0.0486 3.1970 -3.7201 13 7 1.5467 2.1363 1.1973 14 6 2.4382 1.9086 2.3424 15 6 1.9519 2.7296 3.5385 16 1 0.8941 2.5458 3.7267 17 6 2.7962 2.4164 4.7988 18 6 2.6372 3.6712 5.6819 19 1 2.1612 3.5436 6.6541 20 6 2.2707 4.8297 4.7377 21 1 1.5129 5.5645 5.0098 22 6 2.2204 4.2386 3.3138 23 6 3.6127 4.8311 5.4725 24 9 3.7711 5.7390 6.5251 25 9 4.7624 4.5786 4.7163 26 1 -0.3634 0.4439 0.9268 27 1 -0.3634 0.5806 -0.8479 28 1 -0.3633 -1.0247 -0.0790 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.8721 0.2782 -3.4807 32 1 1.4293 3.1227 1.0210 33 1 2.4330 0.8500 2.6020 34 1 3.4514 2.2134 2.0803 35 1 2.4053 1.5373 5.3111 36 1 3.8422 2.2690 4.5302 37 1 3.1735 4.3856 2.8057 38 1 1.4089 4.6889 2.7422 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693348644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:05 Heat of formation + Delta-G solvation = -97.997505 kcal Electronic energy + Delta-G solvation = -19790.723747 eV Core-core repulsion = 16496.453150 eV Total energy + Delta-G solvation = -3294.270597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.69752 -48.38635 -40.27762 -37.94686 -34.93318 -33.17006 -31.36534 -29.42818 -28.32733 -25.79439 -24.86695 -22.65055 -21.31975 -21.07257 -20.74514 -18.81527 -18.37521 -17.77877 -16.94883 -16.82714 -16.20523 -15.95183 -15.43180 -15.08715 -15.01907 -14.65831 -14.44145 -14.24555 -13.92561 -13.75645 -13.57009 -13.35975 -12.91428 -12.79628 -12.45328 -12.39849 -12.33793 -12.02936 -11.85305 -11.60437 -11.45968 -11.21945 -11.11520 -10.77987 -10.74965 -10.51184 -8.96534 -8.07851 -6.20059 1.42807 1.44692 1.54131 2.00707 2.04466 2.44065 3.17586 3.20417 3.21461 3.58723 3.70266 3.98974 4.11215 4.24264 4.25186 4.45054 4.56478 4.65844 4.70626 4.81286 4.84110 4.93848 4.95856 5.01316 5.03076 5.05722 5.22015 5.33483 5.41913 5.51602 5.60560 5.73905 5.86268 5.93657 6.31556 6.53106 6.84486 7.08088 7.49010 8.97239 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.030996 B = 0.004432 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.116983 B = 6316.512428 C = 6723.589808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.220 3.780 4 H -0.041 1.041 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.676 5.676 14 C 0.071 3.929 15 C -0.074 4.074 16 H 0.101 0.899 17 C -0.093 4.093 18 C -0.138 4.138 19 H 0.163 0.837 20 C -0.144 4.144 21 H 0.158 0.842 22 C -0.098 4.098 23 C 0.182 3.818 24 F -0.167 7.167 25 F -0.179 7.179 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.332 0.668 33 H 0.061 0.939 34 H 0.003 0.997 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 5.881 16.255 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.111 3.889 4 H -0.024 1.024 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.307 5.307 14 C -0.059 4.059 15 C -0.093 4.093 16 H 0.119 0.881 17 C -0.131 4.131 18 C -0.157 4.157 19 H 0.181 0.819 20 C -0.163 4.163 21 H 0.176 0.824 22 C -0.136 4.136 23 C 0.146 3.854 24 F -0.148 7.148 25 F -0.159 7.159 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.591 5.270 16.293 17.319 hybrid contribution 1.334 0.975 -1.323 2.117 sum -1.257 6.245 14.971 16.270 Atomic orbital electron populations 1.21302 0.95744 0.98306 1.01018 1.21309 0.96462 0.97674 0.98359 1.18933 0.90464 0.92323 0.87155 1.02355 1.21474 1.31293 1.11947 0.91326 0.92269 1.25636 0.95283 0.95632 1.01786 1.70031 1.37766 1.24036 1.23938 0.85618 0.78917 0.78204 0.79271 1.20561 1.21214 1.19003 1.60659 1.49098 1.15563 1.05338 1.21915 0.92979 0.99647 0.91345 1.22231 1.01123 0.93018 0.92905 0.88124 1.22051 1.00601 0.96322 0.94156 1.24713 0.97529 0.90805 1.02610 0.81943 1.24680 0.94293 1.01661 0.95673 0.82444 1.22084 1.02531 0.95286 0.93667 1.20697 0.81425 0.96341 0.86974 1.92991 1.96288 1.68423 1.57083 1.92968 1.53042 1.94178 1.75738 0.92574 0.94588 0.95007 0.92679 0.96190 0.93119 0.85060 0.92057 0.97920 0.87823 0.91771 0.92507 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.52 71.98 0.69 -3.89 16 2 C -0.10 -4.78 5.59 30.60 0.17 -4.61 16 3 C 0.22 10.89 2.30 44.17 0.10 10.99 16 4 H -0.04 -2.33 7.72 -2.39 -0.02 -2.35 16 5 C -0.52 -27.70 7.26 25.60 0.19 -27.52 16 6 H 0.06 3.07 7.60 -2.91 -0.02 3.05 16 7 C 0.02 0.85 5.30 84.65 0.45 1.30 16 8 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 9 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.68 -26.70 5.64 -495.43 -2.80 -29.49 16 14 C 0.07 2.35 5.02 86.31 0.43 2.79 16 15 C -0.07 -1.77 3.10 -9.49 -0.03 -1.80 16 16 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.09 -1.86 5.96 31.67 0.19 -1.67 16 18 C -0.14 -2.38 6.92 -10.07 -0.07 -2.45 16 19 H 0.16 1.89 8.14 -2.39 -0.02 1.87 16 20 C -0.14 -2.70 6.92 -10.07 -0.07 -2.77 16 21 H 0.16 2.18 8.14 -2.39 -0.02 2.16 16 22 C -0.10 -2.27 5.36 31.67 0.17 -2.10 16 23 C 0.18 4.10 5.13 30.59 0.16 4.25 16 24 F -0.17 -3.89 17.60 44.97 0.79 -3.10 16 25 F -0.18 -5.03 16.19 44.97 0.73 -4.30 16 26 H 0.06 2.22 7.74 -2.39 -0.02 2.21 16 27 H 0.03 1.67 7.07 -2.39 -0.02 1.65 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 30 H 0.02 0.88 7.60 -2.39 -0.02 0.86 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.33 12.76 7.44 -89.70 -0.67 12.09 16 33 H 0.06 2.08 7.60 -2.39 -0.02 2.06 16 34 H 0.00 0.10 7.79 -2.38 -0.02 0.08 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.49 7.56 -2.39 -0.02 1.47 16 37 H 0.06 1.57 7.44 -2.39 -0.02 1.55 16 38 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -59.91 308.67 3.75 -56.16 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.39 Total: 15.57 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 2.37 Total: -27.47 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.55 Total: -81.88 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 1.52 Total: -7.41 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -59.91 3.75 -56.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693348644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.841 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds