Wall clock time and date at job start Mon Mar 30 2020 07:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99793 * 2 1 4 4 C 1.50706 * 109.47178 * 293.94999 * 3 2 1 5 5 C 1.38639 * 119.74839 * 90.00073 * 4 3 2 6 6 C 1.37620 * 120.24897 * 180.23652 * 5 4 3 7 7 C 1.40715 * 119.74131 * 359.51904 * 6 5 4 8 8 C 1.41399 * 120.24183 * 180.22985 * 7 6 5 9 9 H 1.07996 * 120.00044 * 204.52621 * 8 7 6 10 10 C 1.39950 * 119.99773 * 24.53568 * 8 7 6 11 11 N 1.30821 * 119.99991 * 17.71280 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 197.70913 * 10 8 7 13 13 H 1.48506 * 109.46742 * 59.99979 * 12 10 8 14 14 H 1.48505 * 109.46999 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47336 * 300.00007 * 12 10 8 16 16 C 1.40715 * 119.51261 * 0.47567 * 7 6 5 17 17 C 1.37609 * 119.74608 * 359.75586 * 16 7 6 18 18 C 1.46897 * 110.99807 * 123.95092 * 2 1 3 19 19 C 1.52999 * 109.47498 * 66.05001 * 18 2 1 20 20 C 1.53004 * 115.54775 * 34.32542 * 19 18 2 21 21 C 1.52996 * 117.49678 * 248.62180 * 19 18 2 22 22 C 1.52994 * 60.00010 * 252.50730 * 21 19 18 23 23 H 1.09002 * 109.47040 * 60.00589 * 1 2 3 24 24 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47356 * 300.00366 * 1 2 3 26 26 H 1.08994 * 109.47371 * 173.95488 * 3 2 1 27 27 H 1.09001 * 109.47873 * 53.94752 * 3 2 1 28 28 H 1.08000 * 119.87572 * 359.95847 * 5 4 3 29 29 H 1.07993 * 120.12561 * 179.72165 * 6 5 4 30 30 H 0.97005 * 119.99803 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.12510 * 179.73128 * 16 7 6 32 32 H 1.08002 * 119.87647 * 179.97438 * 17 16 7 33 33 H 1.09004 * 109.47059 * 186.04871 * 18 2 1 34 34 H 1.09003 * 109.47416 * 306.04351 * 18 2 1 35 35 H 1.08994 * 109.46903 * 85.58876 * 20 19 18 36 36 H 1.08996 * 109.46739 * 205.58879 * 20 19 18 37 37 H 1.09001 * 109.46927 * 325.58384 * 20 19 18 38 38 H 1.09001 * 117.50559 * 359.97438 * 21 19 18 39 39 H 1.09002 * 117.50148 * 145.01851 * 21 19 18 40 40 H 1.09000 * 117.49920 * 252.51270 * 22 21 19 41 41 H 1.08994 * 117.49852 * 107.49133 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 0.4463 2.7497 -1.4026 6 6 0.1065 3.3666 -2.5850 7 6 0.9775 3.2906 -3.6875 8 6 0.6411 3.9245 -4.9059 9 1 1.0615 3.5675 -5.8344 10 6 -0.2365 5.0146 -4.9084 11 7 -0.4742 5.6656 -3.7988 12 14 -1.0685 5.5401 -6.4962 13 1 -1.8883 4.4181 -7.0202 14 1 -1.9433 6.7109 -6.2327 15 1 -0.0359 5.9085 -7.4977 16 6 2.1833 2.5747 -3.5703 17 6 2.5004 1.9617 -2.3798 18 6 1.9954 -0.7659 1.1376 19 6 1.6315 -2.2426 0.9705 20 6 1.6096 -2.7578 -0.4700 21 6 0.6149 -2.8347 1.9486 22 6 2.0934 -3.2118 2.0605 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.0796 1.3445 0.1082 27 1 1.5610 1.9275 0.8308 28 1 -0.2190 2.8094 -0.5540 29 1 -0.8236 3.9096 -2.6652 30 1 -1.0828 6.4210 -3.8006 31 1 2.8570 2.5064 -4.4116 32 1 3.4251 1.4114 -2.2876 33 1 3.0797 -0.6610 1.1757 34 1 1.5611 -0.3871 2.0629 35 1 2.6148 -3.0608 -0.7629 36 1 0.9375 -3.6130 -0.5397 37 1 1.2607 -1.9665 -1.1336 38 1 0.2056 -2.1724 2.7115 39 1 -0.0699 -3.5914 1.5660 40 1 2.3814 -4.2166 1.7514 41 1 2.6566 -2.7974 2.8966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693723669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:04 Heat of formation + Delta-G solvation = 39.467548 kcal Electronic energy + Delta-G solvation = -18992.218969 eV Core-core repulsion = 16258.138834 eV Total energy + Delta-G solvation = -2734.080135 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.93235 -37.62973 -35.67215 -33.55045 -30.42057 -29.27615 -28.37959 -27.25978 -26.95363 -24.29145 -22.45588 -21.81803 -20.83753 -19.66494 -18.77750 -17.25540 -15.61732 -15.31151 -15.26178 -15.00595 -14.33611 -13.94101 -13.76131 -13.20980 -13.05632 -12.85821 -12.41538 -12.01694 -11.95004 -11.89896 -11.58756 -11.41754 -11.25890 -11.21943 -11.12940 -10.97957 -10.79520 -10.52485 -10.40047 -10.06456 -9.58047 -9.50673 -9.33761 -9.09247 -7.89894 -7.38373 -7.24854 -6.73524 -4.31598 2.77704 3.07373 3.10077 3.12852 3.21285 3.73354 3.94847 4.30806 4.69556 4.76329 4.89836 5.00769 5.21921 5.55704 5.58219 5.61789 5.70004 5.77760 5.80994 5.84196 5.95188 6.05304 6.06774 6.09768 6.17191 6.24713 6.31320 6.42414 6.45049 6.48416 6.64653 6.98269 7.10615 7.30055 7.41861 7.50783 7.53046 7.66082 7.93439 8.09154 8.18975 8.34452 8.67644 8.93242 9.01907 10.21008 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.003877 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.874492 B = 7220.299279 C = 7234.377803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.529 5.529 3 C 0.119 3.881 4 C -0.206 4.206 5 C -0.093 4.093 6 C -0.166 4.166 7 C 0.113 3.887 8 C -0.464 4.464 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.795 5.795 12 Si 0.907 3.093 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.229 4.229 17 C -0.069 4.069 18 C 0.089 3.911 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.181 4.181 22 C -0.179 4.179 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.013 0.987 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.280 0.720 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 -10.641 8.243 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.252 5.252 3 C -0.007 4.007 4 C -0.207 4.207 5 C -0.112 4.112 6 C -0.186 4.186 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.420 5.420 12 Si 0.731 3.269 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.190 1.190 16 C -0.248 4.248 17 C -0.088 4.088 18 C -0.039 4.039 19 C -0.112 4.112 20 C -0.169 4.169 21 C -0.218 4.218 22 C -0.217 4.217 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.199 -10.643 7.913 13.317 hybrid contribution -0.689 0.730 0.201 1.024 sum 0.510 -9.913 8.114 12.821 Atomic orbital electron populations 1.22404 0.87697 1.01112 1.00950 1.62073 1.07936 1.14372 1.40817 1.20743 0.98270 0.86303 0.95371 1.18825 0.98796 1.08062 0.95062 1.20513 0.95543 0.98359 0.96818 1.21270 1.00659 1.03317 0.93319 1.17605 0.89463 0.89052 0.92862 1.19570 1.23513 1.11903 0.94425 0.90564 1.25898 0.95075 0.95406 0.97709 1.69825 1.28399 1.15356 1.28416 0.86395 0.79740 0.78513 0.82219 1.18841 1.20397 1.19037 1.20959 0.98385 1.08476 0.97008 1.20312 0.97318 0.98019 0.93165 1.21601 0.99647 0.90722 0.91905 1.21494 1.03054 0.93787 0.92833 1.21311 1.01060 1.00775 0.93800 1.23153 0.92259 1.03631 1.02728 1.23002 0.97362 1.00036 1.01278 0.90248 0.92021 0.96798 0.91874 0.95956 0.90002 0.86640 0.90912 0.89189 0.89543 0.90915 0.95429 0.92865 0.93758 0.89385 0.89331 0.89089 0.88984 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 8.40 60.07 0.50 0.92 16 2 N -0.53 -8.47 3.51 -244.37 -0.86 -9.33 16 3 C 0.12 2.12 5.11 -4.98 -0.03 2.10 16 4 C -0.21 -4.44 4.91 -104.32 -0.51 -4.95 16 5 C -0.09 -2.15 7.92 -39.66 -0.31 -2.47 16 6 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 7 C 0.11 3.02 5.57 -106.82 -0.60 2.42 16 8 C -0.46 -12.43 9.06 -37.74 -0.34 -12.77 16 9 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 10 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 11 N -0.79 -20.64 10.95 55.55 0.61 -20.03 16 12 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 13 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 C -0.23 -5.67 9.80 -38.88 -0.38 -6.05 16 17 C -0.07 -1.56 9.67 -39.66 -0.38 -1.95 16 18 C 0.09 1.20 5.09 -3.83 -0.02 1.18 16 19 C -0.11 -1.33 1.55 -154.51 -0.24 -1.57 16 20 C -0.11 -1.41 9.27 37.16 0.34 -1.06 16 21 C -0.18 -1.91 9.68 -26.74 -0.26 -2.17 16 22 C -0.18 -1.81 9.97 -26.74 -0.27 -2.07 16 23 H 0.08 1.44 6.16 -51.93 -0.32 1.12 16 24 H 0.06 0.88 6.41 -51.93 -0.33 0.55 16 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 27 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.08 1.74 8.02 -52.49 -0.42 1.32 16 29 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 30 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 31 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 34 H 0.03 0.36 7.88 -51.93 -0.41 -0.05 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 37 H 0.09 1.30 6.07 -51.93 -0.32 0.99 16 38 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 39 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -26.55 328.67 -9.94 -36.49 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.69 Total: 5.43 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.92 Total: -31.24 kcal Atomic # 7 Polarization: -29.11 SS G_CDS: -0.25 Total: -29.36 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.55 -9.94 -36.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693723669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.959 kcal (2) G-P(sol) polarization free energy of solvation -26.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds