Wall clock time and date at job start Mon Mar 30 2020 07:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99793 * 2 1 4 4 C 1.50706 * 109.47178 * 293.94999 * 3 2 1 5 5 C 1.38639 * 119.74839 * 90.00073 * 4 3 2 6 6 C 1.37620 * 120.24897 * 180.23652 * 5 4 3 7 7 C 1.40715 * 119.74131 * 359.51904 * 6 5 4 8 8 C 1.41399 * 120.24183 * 180.22985 * 7 6 5 9 9 H 1.07996 * 120.00044 * 204.52621 * 8 7 6 10 10 C 1.39950 * 119.99773 * 24.53568 * 8 7 6 11 11 N 1.30821 * 119.99991 * 17.71280 * 10 8 7 12 12 Si 1.86800 * 119.99756 * 197.70913 * 10 8 7 13 13 H 1.48506 * 109.46742 * 59.99979 * 12 10 8 14 14 H 1.48505 * 109.46999 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47336 * 300.00007 * 12 10 8 16 16 C 1.40715 * 119.51261 * 0.47567 * 7 6 5 17 17 C 1.37609 * 119.74608 * 359.75586 * 16 7 6 18 18 C 1.46897 * 110.99807 * 123.95092 * 2 1 3 19 19 C 1.52999 * 109.47498 * 66.05001 * 18 2 1 20 20 C 1.53004 * 115.54775 * 34.32542 * 19 18 2 21 21 C 1.52996 * 117.49678 * 248.62180 * 19 18 2 22 22 C 1.52994 * 60.00010 * 252.50730 * 21 19 18 23 23 H 1.09002 * 109.47040 * 60.00589 * 1 2 3 24 24 H 1.08999 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47356 * 300.00366 * 1 2 3 26 26 H 1.08994 * 109.47371 * 173.95488 * 3 2 1 27 27 H 1.09001 * 109.47873 * 53.94752 * 3 2 1 28 28 H 1.08000 * 119.87572 * 359.95847 * 5 4 3 29 29 H 1.07993 * 120.12561 * 179.72165 * 6 5 4 30 30 H 0.97005 * 119.99803 * 180.02562 * 11 10 8 31 31 H 1.08000 * 120.12510 * 179.73128 * 16 7 6 32 32 H 1.08002 * 119.87647 * 179.97438 * 17 16 7 33 33 H 1.09004 * 109.47059 * 186.04871 * 18 2 1 34 34 H 1.09003 * 109.47416 * 306.04351 * 18 2 1 35 35 H 1.08994 * 109.46903 * 85.58876 * 20 19 18 36 36 H 1.08996 * 109.46739 * 205.58879 * 20 19 18 37 37 H 1.09001 * 109.46927 * 325.58384 * 20 19 18 38 38 H 1.09001 * 117.50559 * 359.97438 * 21 19 18 39 39 H 1.09002 * 117.50148 * 145.01851 * 21 19 18 40 40 H 1.09000 * 117.49920 * 252.51270 * 22 21 19 41 41 H 1.08994 * 117.49852 * 107.49133 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 6 0.4463 2.7497 -1.4026 6 6 0.1065 3.3666 -2.5850 7 6 0.9775 3.2906 -3.6875 8 6 0.6411 3.9245 -4.9059 9 1 1.0615 3.5675 -5.8344 10 6 -0.2365 5.0146 -4.9084 11 7 -0.4742 5.6656 -3.7988 12 14 -1.0685 5.5401 -6.4962 13 1 -1.8883 4.4181 -7.0202 14 1 -1.9433 6.7109 -6.2327 15 1 -0.0359 5.9085 -7.4977 16 6 2.1833 2.5747 -3.5703 17 6 2.5004 1.9617 -2.3798 18 6 1.9954 -0.7659 1.1376 19 6 1.6315 -2.2426 0.9705 20 6 1.6096 -2.7578 -0.4700 21 6 0.6149 -2.8347 1.9486 22 6 2.0934 -3.2118 2.0605 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.0796 1.3445 0.1082 27 1 1.5610 1.9275 0.8308 28 1 -0.2190 2.8094 -0.5540 29 1 -0.8236 3.9096 -2.6652 30 1 -1.0828 6.4210 -3.8006 31 1 2.8570 2.5064 -4.4116 32 1 3.4251 1.4114 -2.2876 33 1 3.0797 -0.6610 1.1757 34 1 1.5611 -0.3871 2.0629 35 1 2.6148 -3.0608 -0.7629 36 1 0.9375 -3.6130 -0.5397 37 1 1.2607 -1.9665 -1.1336 38 1 0.2056 -2.1724 2.7115 39 1 -0.0699 -3.5914 1.5660 40 1 2.3814 -4.2166 1.7514 41 1 2.6566 -2.7974 2.8966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693723669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:03 Heat of formation + Delta-G solvation = 27.839202 kcal Electronic energy + Delta-G solvation = -18992.723212 eV Core-core repulsion = 16258.138834 eV Total energy + Delta-G solvation = -2734.584378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14221 -39.19995 -37.01901 -35.35992 -32.16382 -31.16119 -29.46233 -28.58716 -28.37112 -25.93555 -23.33843 -23.23062 -22.68789 -21.39062 -19.72834 -19.18909 -17.17741 -16.63848 -16.53033 -16.29219 -15.81803 -15.53755 -15.28513 -14.66282 -14.38620 -14.08962 -13.91202 -13.78458 -13.39164 -13.07045 -12.99762 -12.84892 -12.69652 -12.58732 -12.42966 -12.33255 -12.16751 -12.09423 -11.94540 -11.40590 -11.22660 -10.98177 -10.93136 -10.43892 -9.35031 -9.21367 -9.04504 -8.61789 -6.30716 0.97693 1.19599 1.37875 1.48918 1.53969 2.21549 2.68248 2.89403 3.22574 3.82004 3.86780 4.03202 4.07653 4.22386 4.30061 4.33700 4.53402 4.55578 4.61502 4.67055 4.78230 4.81428 4.81470 4.89614 5.02512 5.07339 5.10358 5.15122 5.16980 5.18939 5.29545 5.31233 5.40730 5.51170 5.61406 5.74382 5.99704 6.13115 6.16186 6.30562 6.37343 6.43331 6.73625 6.97323 7.07736 8.35028 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.003877 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.874492 B = 7220.299279 C = 7234.377803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.536 5.536 3 C 0.124 3.876 4 C -0.192 4.192 5 C -0.093 4.093 6 C -0.190 4.190 7 C 0.080 3.920 8 C -0.505 4.505 9 H 0.073 0.927 10 C 0.036 3.964 11 N -0.827 5.827 12 Si 0.981 3.019 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.260 1.260 16 C -0.245 4.245 17 C -0.072 4.072 18 C 0.092 3.908 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.178 4.178 22 C -0.164 4.164 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.020 0.980 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.287 0.713 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.496 -11.973 9.483 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.259 5.259 3 C -0.002 4.002 4 C -0.193 4.193 5 C -0.112 4.112 6 C -0.210 4.210 7 C 0.078 3.922 8 C -0.535 4.535 9 H 0.091 0.909 10 C -0.179 4.179 11 N -0.453 5.453 12 Si 0.801 3.199 13 H -0.186 1.186 14 H -0.191 1.191 15 H -0.184 1.184 16 C -0.265 4.265 17 C -0.091 4.091 18 C -0.036 4.036 19 C -0.129 4.129 20 C -0.165 4.165 21 C -0.215 4.215 22 C -0.202 4.202 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.543 -11.990 9.170 15.173 hybrid contribution -0.725 1.030 -0.043 1.260 sum 0.817 -10.961 9.127 14.287 Atomic orbital electron populations 1.22300 0.87724 1.01682 0.99765 1.61970 1.07967 1.13266 1.42721 1.20667 0.99351 0.87182 0.93048 1.19250 0.97342 1.06255 0.96481 1.20709 0.96429 0.97754 0.96313 1.21228 1.00380 1.04757 0.94591 1.17938 0.90545 0.90232 0.93503 1.19816 1.25769 1.13443 0.94462 0.90915 1.26734 0.95000 0.94813 1.01316 1.69879 1.29016 1.15914 1.30502 0.85280 0.78641 0.78295 0.77644 1.18587 1.19132 1.18381 1.21160 0.98092 1.08942 0.98261 1.20619 0.98415 0.97543 0.92513 1.21634 0.99858 0.91185 0.90876 1.21416 1.05242 0.93276 0.92994 1.21230 1.01228 1.00260 0.93831 1.23211 0.92714 1.03536 1.02000 1.23075 0.96985 0.99869 1.00224 0.93103 0.90618 0.96175 0.90324 0.95374 0.88391 0.88481 0.90242 0.88867 0.86911 0.90378 0.94795 0.92807 0.92721 0.91942 0.89077 0.88488 0.87984 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 8.40 127.69 1.07 2.08 16 2 N -0.54 -16.09 3.51 -927.05 -3.25 -19.34 16 3 C 0.12 4.14 5.11 85.56 0.44 4.58 16 4 C -0.19 -8.11 4.91 -19.67 -0.10 -8.21 16 5 C -0.09 -4.34 7.92 22.22 0.18 -4.16 16 6 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 7 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 8 C -0.51 -28.14 9.06 23.46 0.21 -27.93 16 9 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 10 C 0.04 1.86 5.14 85.26 0.44 2.30 16 11 N -0.83 -44.29 10.95 21.83 0.24 -44.05 16 12 Si 0.98 39.11 29.59 68.60 2.03 41.14 16 13 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 14 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 16 C -0.24 -12.41 9.80 22.73 0.22 -12.18 16 17 C -0.07 -3.22 9.67 22.22 0.21 -3.00 16 18 C 0.09 2.21 5.09 86.30 0.44 2.65 16 19 C -0.13 -2.73 1.55 -52.18 -0.08 -2.81 16 20 C -0.11 -2.51 9.27 71.98 0.67 -1.84 16 21 C -0.18 -3.21 9.68 30.59 0.30 -2.91 16 22 C -0.16 -2.74 9.97 30.59 0.31 -2.44 16 23 H 0.05 1.82 6.16 -2.39 -0.01 1.81 16 24 H 0.08 2.05 6.41 -2.39 -0.02 2.03 16 25 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 2.40 7.87 -2.39 -0.02 2.38 16 27 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 28 H 0.10 4.15 8.02 -2.91 -0.02 4.13 16 29 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 30 H 0.29 13.91 8.30 -92.70 -0.77 13.14 16 31 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 34 H 0.03 0.78 7.88 -2.39 -0.02 0.76 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.12 7.90 -2.39 -0.02 1.10 16 37 H 0.06 1.77 6.07 -2.39 -0.01 1.76 16 38 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 39 H 0.10 1.64 8.05 -2.39 -0.02 1.62 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -58.42 328.67 4.38 -54.04 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: 0.99 Total: 27.78 kcal Atomic # 6 Polarization: -63.95 SS G_CDS: 4.38 Total: -59.57 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -3.02 Total: -63.39 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -58.42 4.38 -54.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693723669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.878 kcal (2) G-P(sol) polarization free energy of solvation -58.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds