Wall clock time and date at job start Mon Mar 30 2020 06:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99584 * 2 1 4 4 H 1.48503 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47538 * 300.00358 * 3 2 1 6 6 H 1.48503 * 109.47481 * 60.00435 * 3 2 1 7 7 C 1.37876 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99996 * 173.20773 * 7 2 1 9 9 C 1.50703 * 119.99842 * 353.19871 * 7 2 1 10 10 C 1.52997 * 115.54881 * 85.09704 * 9 7 2 11 11 N 1.46902 * 109.46764 * 65.16841 * 10 9 7 12 12 C 1.46905 * 110.99665 * 174.73534 * 11 10 9 13 13 H 1.08991 * 109.47470 * 34.99990 * 12 11 10 14 14 C 1.53002 * 109.46991 * 155.00350 * 12 11 10 15 15 C 1.52999 * 109.47231 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46932 * 299.99690 * 15 14 12 17 17 C 1.53002 * 109.47270 * 60.00007 * 16 15 14 18 18 F 1.39895 * 109.47326 * 180.02562 * 17 16 15 19 19 F 1.39905 * 109.46918 * 59.99695 * 17 16 15 20 20 C 1.53001 * 109.47070 * 274.99977 * 12 11 10 21 21 C 1.52996 * 117.49534 * 230.76717 * 9 7 2 22 22 C 1.53005 * 117.49939 * 299.42582 * 9 7 2 23 23 H 0.96995 * 120.00622 * 5.03414 * 1 2 3 24 24 H 1.08992 * 109.47596 * 305.17192 * 10 9 7 25 25 H 1.09004 * 109.47105 * 185.16336 * 10 9 7 26 26 H 1.00899 * 111.00111 * 298.68806 * 11 10 9 27 27 H 1.09006 * 109.46615 * 299.99768 * 14 12 11 28 28 H 1.08998 * 109.47171 * 59.99932 * 14 12 11 29 29 H 1.09005 * 109.46910 * 59.99234 * 15 14 12 30 30 H 1.08995 * 109.46993 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.47373 * 300.00029 * 16 15 14 32 32 H 1.09001 * 109.46889 * 179.97438 * 16 15 14 33 33 H 1.09006 * 109.47026 * 300.00281 * 20 12 11 34 34 H 1.08999 * 109.47054 * 59.99674 * 20 12 11 35 35 H 1.09003 * 117.49863 * 214.99835 * 21 9 7 36 36 H 1.09000 * 117.50417 * 0.02562 * 21 9 7 37 37 H 1.08997 * 117.49401 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.49349 * 144.99886 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0789 -1.1972 -0.1112 9 6 1.2591 -2.4946 0.1534 10 6 0.6898 -3.0857 -1.1378 11 7 1.7929 -3.4606 -2.0326 12 6 1.2893 -4.1462 -3.2303 13 1 0.3288 -3.7182 -3.5172 14 6 2.2882 -3.9713 -4.3760 15 6 1.7635 -4.6848 -5.6235 16 6 1.5879 -6.1747 -5.3230 17 6 0.5890 -6.3497 -4.1774 18 9 0.4289 -7.7119 -3.9022 19 9 -0.6436 -5.7997 -4.5454 20 6 1.1142 -5.6361 -2.9294 21 6 1.7582 -3.4731 1.2185 22 6 0.4554 -2.7003 1.4391 23 1 -0.4851 0.8367 -0.0737 24 1 0.0590 -2.3452 -1.6293 25 1 0.0967 -3.9695 -0.9023 26 1 2.3453 -2.6543 -2.2830 27 1 2.4129 -2.9099 -4.5903 28 1 3.2487 -4.3994 -4.0891 29 1 0.8031 -4.2564 -5.9102 30 1 2.4750 -4.5598 -6.4398 31 1 2.5483 -6.6032 -5.0363 32 1 1.2137 -6.6830 -6.2117 33 1 2.0747 -6.0641 -2.6425 34 1 0.4026 -5.7607 -2.1131 35 1 1.6809 -4.5381 0.9993 36 1 2.6255 -3.1760 1.8081 37 1 0.4663 -1.8951 2.1736 38 1 -0.4789 -3.2568 1.3648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695099702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:49 Heat of formation + Delta-G solvation = -97.624448 kcal Electronic energy + Delta-G solvation = -20223.987207 eV Core-core repulsion = 16929.732787 eV Total energy + Delta-G solvation = -3294.254420 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.87271 -46.86496 -38.25760 -36.51908 -33.58668 -31.91536 -30.14430 -29.04145 -25.62658 -24.41365 -22.65467 -21.64332 -20.92335 -19.90374 -18.97830 -17.21545 -16.69372 -16.23765 -15.93482 -14.97374 -14.64477 -14.58089 -14.20607 -13.85058 -13.64745 -13.29486 -13.18028 -13.01550 -12.62813 -12.43932 -12.15179 -11.84307 -11.58824 -11.39347 -11.04749 -10.99131 -10.91143 -10.67575 -10.63385 -10.41004 -10.18192 -10.08051 -9.39134 -8.74877 -8.43414 -8.07562 -7.57432 -6.03437 -4.09923 3.25537 3.35133 3.38610 3.80079 4.10609 4.37640 4.38421 4.39712 4.83152 4.97497 5.12820 5.21344 5.24901 5.28876 5.38380 5.52906 5.57185 5.74304 5.86018 5.92842 6.02588 6.05667 6.17635 6.25298 6.37254 6.48627 6.58288 6.84771 6.85337 6.92426 7.18347 7.52587 7.55794 7.87281 7.93898 8.23249 8.49480 8.93957 9.56013 11.04465 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.005410 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.566639 B = 5174.682427 C = 5678.388211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.050 3.950 10 C 0.105 3.895 11 N -0.675 5.675 12 C 0.088 3.912 13 H 0.047 0.953 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.155 4.155 17 C 0.286 3.714 18 F -0.207 7.207 19 F -0.201 7.201 20 C -0.144 4.144 21 C -0.200 4.200 22 C -0.163 4.163 23 H 0.259 0.741 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.352 0.648 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -9.856 -10.148 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.049 3.951 10 C -0.023 4.023 11 N -0.307 5.307 12 C -0.023 4.023 13 H 0.065 0.935 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.193 4.193 17 C 0.250 3.750 18 F -0.188 7.188 19 F -0.183 7.183 20 C -0.183 4.183 21 C -0.237 4.237 22 C -0.201 4.201 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.172 0.828 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.717 -10.310 -9.739 14.440 hybrid contribution -0.294 1.541 -0.392 1.617 sum 2.423 -8.769 -10.131 13.616 Atomic orbital electron populations 1.70001 1.05881 1.26518 1.49259 1.25014 0.94765 0.98845 0.94709 0.86627 0.80332 0.84020 0.77562 1.19669 1.21190 1.21023 1.20504 0.93113 0.88799 1.50695 0.92114 1.18733 0.97369 0.93353 0.85596 1.21497 0.90872 0.95940 0.94037 1.60386 1.24000 1.32377 1.13906 1.21323 0.97296 0.92706 0.90929 0.93517 1.21802 0.99466 1.01229 0.93841 1.21479 1.02470 0.92974 0.98492 1.22503 0.99644 0.99679 0.97496 1.21230 0.81412 0.75319 0.97053 1.92983 1.96187 1.34542 1.95050 1.92986 1.46807 1.85475 1.92983 1.22522 1.03774 0.97069 0.94921 1.22869 0.97656 0.95812 1.07403 1.22539 0.92441 1.01353 1.03766 0.93140 0.94506 0.94490 0.82809 0.90995 0.90654 0.91038 0.90561 0.88791 0.89960 0.88408 0.89774 0.91735 0.90907 0.90325 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 12.94 55.43 0.72 -23.82 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.49 -12.96 8.33 -34.44 -0.29 -13.25 16 8 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 9 C 0.05 1.21 1.56 -155.66 -0.24 0.97 16 10 C 0.11 2.31 5.32 -3.82 -0.02 2.29 16 11 N -0.67 -12.50 6.28 -106.72 -0.67 -13.17 16 12 C 0.09 1.35 2.37 -67.71 -0.16 1.19 16 13 H 0.05 0.79 7.52 -51.93 -0.39 0.40 16 14 C -0.13 -1.52 5.19 -26.73 -0.14 -1.66 16 15 C -0.12 -1.18 5.80 -26.73 -0.16 -1.33 16 16 C -0.16 -1.58 5.45 -26.73 -0.15 -1.73 16 17 C 0.29 3.79 2.10 -26.70 -0.06 3.73 16 18 F -0.21 -2.92 17.06 2.25 0.04 -2.88 16 19 F -0.20 -3.04 16.02 2.25 0.04 -3.00 16 20 C -0.14 -2.06 4.95 -26.70 -0.13 -2.19 16 21 C -0.20 -4.44 9.96 -26.70 -0.27 -4.71 16 22 C -0.16 -3.88 9.45 -26.69 -0.25 -4.13 16 23 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.78 7.28 -51.93 -0.38 0.41 16 26 H 0.35 6.76 7.92 -39.29 -0.31 6.45 16 27 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.32 7.38 -51.93 -0.38 0.94 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -27.58 312.61 -8.20 -35.78 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.06 Total: 5.82 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.95 Total: -19.06 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.05 Total: -36.99 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.07 Total: -5.88 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.58 -8.20 -35.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695099702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.841 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds