Wall clock time and date at job start Mon Mar 30 2020 06:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99584 * 2 1 4 4 H 1.48503 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47538 * 300.00358 * 3 2 1 6 6 H 1.48503 * 109.47481 * 60.00435 * 3 2 1 7 7 C 1.37876 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99996 * 173.20773 * 7 2 1 9 9 C 1.50703 * 119.99842 * 353.19871 * 7 2 1 10 10 C 1.52997 * 115.54881 * 85.09704 * 9 7 2 11 11 N 1.46902 * 109.46764 * 65.16841 * 10 9 7 12 12 C 1.46905 * 110.99665 * 174.73534 * 11 10 9 13 13 H 1.08991 * 109.47470 * 34.99990 * 12 11 10 14 14 C 1.53002 * 109.46991 * 155.00350 * 12 11 10 15 15 C 1.52999 * 109.47231 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46932 * 299.99690 * 15 14 12 17 17 C 1.53002 * 109.47270 * 60.00007 * 16 15 14 18 18 F 1.39895 * 109.47326 * 180.02562 * 17 16 15 19 19 F 1.39905 * 109.46918 * 59.99695 * 17 16 15 20 20 C 1.53001 * 109.47070 * 274.99977 * 12 11 10 21 21 C 1.52996 * 117.49534 * 230.76717 * 9 7 2 22 22 C 1.53005 * 117.49939 * 299.42582 * 9 7 2 23 23 H 0.96995 * 120.00622 * 5.03414 * 1 2 3 24 24 H 1.08992 * 109.47596 * 305.17192 * 10 9 7 25 25 H 1.09004 * 109.47105 * 185.16336 * 10 9 7 26 26 H 1.00899 * 111.00111 * 298.68806 * 11 10 9 27 27 H 1.09006 * 109.46615 * 299.99768 * 14 12 11 28 28 H 1.08998 * 109.47171 * 59.99932 * 14 12 11 29 29 H 1.09005 * 109.46910 * 59.99234 * 15 14 12 30 30 H 1.08995 * 109.46993 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.47373 * 300.00029 * 16 15 14 32 32 H 1.09001 * 109.46889 * 179.97438 * 16 15 14 33 33 H 1.09006 * 109.47026 * 300.00281 * 20 12 11 34 34 H 1.08999 * 109.47054 * 59.99674 * 20 12 11 35 35 H 1.09003 * 117.49863 * 214.99835 * 21 9 7 36 36 H 1.09000 * 117.50417 * 0.02562 * 21 9 7 37 37 H 1.08997 * 117.49401 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.49349 * 144.99886 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0789 -1.1972 -0.1112 9 6 1.2591 -2.4946 0.1534 10 6 0.6898 -3.0857 -1.1378 11 7 1.7929 -3.4606 -2.0326 12 6 1.2893 -4.1462 -3.2303 13 1 0.3288 -3.7182 -3.5172 14 6 2.2882 -3.9713 -4.3760 15 6 1.7635 -4.6848 -5.6235 16 6 1.5879 -6.1747 -5.3230 17 6 0.5890 -6.3497 -4.1774 18 9 0.4289 -7.7119 -3.9022 19 9 -0.6436 -5.7997 -4.5454 20 6 1.1142 -5.6361 -2.9294 21 6 1.7582 -3.4731 1.2185 22 6 0.4554 -2.7003 1.4391 23 1 -0.4851 0.8367 -0.0737 24 1 0.0590 -2.3452 -1.6293 25 1 0.0967 -3.9695 -0.9023 26 1 2.3453 -2.6543 -2.2830 27 1 2.4129 -2.9099 -4.5903 28 1 3.2487 -4.3994 -4.0891 29 1 0.8031 -4.2564 -5.9102 30 1 2.4750 -4.5598 -6.4398 31 1 2.5483 -6.6032 -5.0363 32 1 1.2137 -6.6830 -6.2117 33 1 2.0747 -6.0641 -2.6425 34 1 0.4026 -5.7607 -2.1131 35 1 1.6809 -4.5381 0.9993 36 1 2.6255 -3.1760 1.8081 37 1 0.4663 -1.8951 2.1736 38 1 -0.4789 -3.2568 1.3648 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695099702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:48 Heat of formation + Delta-G solvation = -112.579748 kcal Electronic energy + Delta-G solvation = -20224.635718 eV Core-core repulsion = 16929.732787 eV Total energy + Delta-G solvation = -3294.902931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96958 -47.97623 -39.54199 -38.18417 -34.92168 -33.94928 -31.21716 -30.24710 -27.60757 -25.98670 -23.70187 -22.98464 -22.61148 -21.15961 -20.71085 -18.32916 -17.93808 -17.76330 -17.28410 -16.60666 -16.10211 -15.97099 -15.65410 -15.39764 -14.93192 -14.51744 -14.41393 -14.30473 -13.95636 -13.63323 -13.35435 -13.18727 -13.14893 -12.98087 -12.88220 -12.67446 -12.26917 -12.03781 -12.00653 -11.72801 -11.70127 -11.39154 -11.10033 -10.71397 -10.40437 -9.93654 -9.18411 -8.07961 -6.19678 1.40270 1.44792 1.54654 2.43566 2.74780 3.04027 3.20312 3.33924 3.39207 3.52609 3.78815 4.02094 4.05350 4.21521 4.27219 4.36902 4.37379 4.54655 4.63110 4.72805 4.82373 4.87245 4.92489 4.96285 5.03654 5.05198 5.09353 5.12984 5.23138 5.27917 5.40010 5.65899 5.68310 5.80990 6.31542 6.48138 6.65354 6.90392 7.49001 8.99757 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.005410 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.566639 B = 5174.682427 C = 5678.388211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.122 3.878 11 N -0.669 5.669 12 C 0.088 3.912 13 H 0.024 0.976 14 C -0.120 4.120 15 C -0.111 4.111 16 C -0.149 4.149 17 C 0.281 3.719 18 F -0.212 7.212 19 F -0.216 7.216 20 C -0.141 4.141 21 C -0.175 4.175 22 C -0.173 4.173 23 H 0.258 0.742 24 H 0.001 0.999 25 H 0.039 0.961 26 H 0.348 0.652 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -10.668 -11.435 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.008 4.008 11 N -0.300 5.300 12 C -0.023 4.023 13 H 0.042 0.958 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.186 4.186 17 C 0.245 3.755 18 F -0.193 7.193 19 F -0.197 7.197 20 C -0.180 4.180 21 C -0.212 4.212 22 C -0.211 4.211 23 H 0.067 0.933 24 H 0.020 0.980 25 H 0.058 0.942 26 H 0.167 0.833 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.470 -11.139 -11.032 16.302 hybrid contribution -0.856 1.750 0.040 1.949 sum 3.613 -9.388 -10.992 14.900 Atomic orbital electron populations 1.70118 1.07232 1.27106 1.50486 1.25689 0.95433 1.01902 0.94590 0.85653 0.79428 0.80164 0.77270 1.18834 1.20818 1.21352 1.20732 0.93043 0.89931 1.50115 0.92488 1.18899 0.98029 0.93723 0.86654 1.21172 0.91222 0.94775 0.93593 1.60364 1.22632 1.31830 1.15175 1.21408 0.97280 0.92750 0.90845 0.95771 1.21782 0.98986 1.01697 0.93341 1.21471 1.02651 0.92547 0.98178 1.22545 0.99500 0.99908 0.96668 1.21502 0.81510 0.74716 0.97783 1.92971 1.96237 1.34869 1.95202 1.92961 1.47992 1.85711 1.93055 1.22463 1.03929 0.96460 0.95102 1.22841 0.96482 0.96426 1.05494 1.22464 0.93717 1.01481 1.03431 0.93317 0.98036 0.94223 0.83310 0.91209 0.89270 0.92144 0.87497 0.86696 0.88270 0.87056 0.91917 0.89715 0.90734 0.92525 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.83 12.94 21.45 0.28 -51.55 16 2 C 0.02 1.27 5.39 84.65 0.46 1.73 16 3 Si 0.95 42.52 29.55 68.60 2.03 44.55 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.50 -26.37 8.33 25.60 0.21 -26.16 16 8 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16 9 C 0.03 1.34 1.56 -52.93 -0.08 1.26 16 10 C 0.12 5.43 5.32 86.30 0.46 5.89 16 11 N -0.67 -24.57 6.28 -491.57 -3.09 -27.66 16 12 C 0.09 2.62 2.37 44.92 0.11 2.73 16 13 H 0.02 0.84 7.52 -2.39 -0.02 0.82 16 14 C -0.12 -2.66 5.19 30.59 0.16 -2.50 16 15 C -0.11 -1.92 5.80 30.59 0.18 -1.74 16 16 C -0.15 -2.55 5.45 30.60 0.17 -2.38 16 17 C 0.28 7.00 2.10 30.61 0.06 7.07 16 18 F -0.21 -5.65 17.06 44.97 0.77 -4.88 16 19 F -0.22 -6.41 16.02 44.97 0.72 -5.69 16 20 C -0.14 -3.87 4.95 30.61 0.15 -3.72 16 21 C -0.18 -7.61 9.96 30.62 0.30 -7.30 16 22 C -0.17 -8.30 9.45 30.62 0.29 -8.01 16 23 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.04 1.71 7.28 -2.39 -0.02 1.70 16 26 H 0.35 13.26 7.92 -89.69 -0.71 12.55 16 27 H 0.07 1.58 8.12 -2.38 -0.02 1.56 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.20 7.80 -2.38 -0.02 1.19 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 34 H 0.06 1.97 7.38 -2.39 -0.02 1.95 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -59.33 312.61 3.50 -55.82 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.33 Total: 22.54 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 2.47 Total: -33.13 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.81 Total: -79.21 kcal Atomic # 9 Polarization: -12.06 SS G_CDS: 1.49 Total: -10.57 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -59.33 3.50 -55.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695099702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.755 kcal (2) G-P(sol) polarization free energy of solvation -59.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds