Wall clock time and date at job start Mon Mar 30 2020 06:39:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86795 * 119.99584 * 2 1
4 4 H 1.48503 * 109.47382 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47538 * 300.00358 * 3 2 1
6 6 H 1.48503 * 109.47481 * 60.00435 * 3 2 1
7 7 C 1.37876 * 120.00259 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99996 * 173.20773 * 7 2 1
9 9 C 1.50703 * 119.99842 * 353.19871 * 7 2 1
10 10 C 1.52997 * 115.54881 * 85.09704 * 9 7 2
11 11 N 1.46902 * 109.46764 * 65.16841 * 10 9 7
12 12 C 1.46905 * 110.99665 * 174.73534 * 11 10 9
13 13 H 1.08991 * 109.47470 * 34.99990 * 12 11 10
14 14 C 1.53002 * 109.46991 * 155.00350 * 12 11 10
15 15 C 1.52999 * 109.47231 * 180.02562 * 14 12 11
16 16 C 1.53001 * 109.46932 * 299.99690 * 15 14 12
17 17 C 1.53002 * 109.47270 * 60.00007 * 16 15 14
18 18 F 1.39895 * 109.47326 * 180.02562 * 17 16 15
19 19 F 1.39905 * 109.46918 * 59.99695 * 17 16 15
20 20 C 1.53001 * 109.47070 * 274.99977 * 12 11 10
21 21 C 1.52996 * 117.49534 * 230.76717 * 9 7 2
22 22 C 1.53005 * 117.49939 * 299.42582 * 9 7 2
23 23 H 0.96995 * 120.00622 * 5.03414 * 1 2 3
24 24 H 1.08992 * 109.47596 * 305.17192 * 10 9 7
25 25 H 1.09004 * 109.47105 * 185.16336 * 10 9 7
26 26 H 1.00899 * 111.00111 * 298.68806 * 11 10 9
27 27 H 1.09006 * 109.46615 * 299.99768 * 14 12 11
28 28 H 1.08998 * 109.47171 * 59.99932 * 14 12 11
29 29 H 1.09005 * 109.46910 * 59.99234 * 15 14 12
30 30 H 1.08995 * 109.46993 * 179.97438 * 15 14 12
31 31 H 1.08998 * 109.47373 * 300.00029 * 16 15 14
32 32 H 1.09001 * 109.46889 * 179.97438 * 16 15 14
33 33 H 1.09006 * 109.47026 * 300.00281 * 20 12 11
34 34 H 1.08999 * 109.47054 * 59.99674 * 20 12 11
35 35 H 1.09003 * 117.49863 * 214.99835 * 21 9 7
36 36 H 1.09000 * 117.50417 * 0.02562 * 21 9 7
37 37 H 1.08997 * 117.49401 * 359.97438 * 22 9 7
38 38 H 1.09001 * 117.49349 * 144.99886 * 22 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.7091 1.3466 -0.0006
5 1 1.8902 2.3966 -1.2124
6 1 1.8904 2.3965 1.2126
7 6 2.0046 -1.1940 -0.0005
8 1 3.0789 -1.1972 -0.1112
9 6 1.2591 -2.4946 0.1534
10 6 0.6898 -3.0857 -1.1378
11 7 1.7929 -3.4606 -2.0326
12 6 1.2893 -4.1462 -3.2303
13 1 0.3288 -3.7182 -3.5172
14 6 2.2882 -3.9713 -4.3760
15 6 1.7635 -4.6848 -5.6235
16 6 1.5879 -6.1747 -5.3230
17 6 0.5890 -6.3497 -4.1774
18 9 0.4289 -7.7119 -3.9022
19 9 -0.6436 -5.7997 -4.5454
20 6 1.1142 -5.6361 -2.9294
21 6 1.7582 -3.4731 1.2185
22 6 0.4554 -2.7003 1.4391
23 1 -0.4851 0.8367 -0.0737
24 1 0.0590 -2.3452 -1.6293
25 1 0.0967 -3.9695 -0.9023
26 1 2.3453 -2.6543 -2.2830
27 1 2.4129 -2.9099 -4.5903
28 1 3.2487 -4.3994 -4.0891
29 1 0.8031 -4.2564 -5.9102
30 1 2.4750 -4.5598 -6.4398
31 1 2.5483 -6.6032 -5.0363
32 1 1.2137 -6.6830 -6.2117
33 1 2.0747 -6.0641 -2.6425
34 1 0.4026 -5.7607 -2.1131
35 1 1.6809 -4.5381 0.9993
36 1 2.6255 -3.1760 1.8081
37 1 0.4663 -1.8951 2.1736
38 1 -0.4789 -3.2568 1.3648
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695099702.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:39:48
Heat of formation + Delta-G solvation = -112.579748 kcal
Electronic energy + Delta-G solvation = -20224.635718 eV
Core-core repulsion = 16929.732787 eV
Total energy + Delta-G solvation = -3294.902931 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.144 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-49.96958 -47.97623 -39.54199 -38.18417 -34.92168 -33.94928 -31.21716 -30.24710
-27.60757 -25.98670 -23.70187 -22.98464 -22.61148 -21.15961 -20.71085 -18.32916
-17.93808 -17.76330 -17.28410 -16.60666 -16.10211 -15.97099 -15.65410 -15.39764
-14.93192 -14.51744 -14.41393 -14.30473 -13.95636 -13.63323 -13.35435 -13.18727
-13.14893 -12.98087 -12.88220 -12.67446 -12.26917 -12.03781 -12.00653 -11.72801
-11.70127 -11.39154 -11.10033 -10.71397 -10.40437 -9.93654 -9.18411 -8.07961
-6.19678 1.40270 1.44792 1.54654 2.43566 2.74780 3.04027 3.20312
3.33924 3.39207 3.52609 3.78815 4.02094 4.05350 4.21521 4.27219
4.36902 4.37379 4.54655 4.63110 4.72805 4.82373 4.87245 4.92489
4.96285 5.03654 5.05198 5.09353 5.12984 5.23138 5.27917 5.40010
5.65899 5.68310 5.80990 6.31542 6.48138 6.65354 6.90392 7.49001
8.99757
Molecular weight = 259.14amu
Principal moments of inertia in cm(-1)
A = 0.027216 B = 0.005410 C = 0.004930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1028.566639 B = 5174.682427 C = 5678.388211
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.024 3.976
3 Si 0.949 3.051
4 H -0.264 1.264
5 H -0.282 1.282
6 H -0.287 1.287
7 C -0.500 4.500
8 H 0.057 0.943
9 C 0.028 3.972
10 C 0.122 3.878
11 N -0.669 5.669
12 C 0.088 3.912
13 H 0.024 0.976
14 C -0.120 4.120
15 C -0.111 4.111
16 C -0.149 4.149
17 C 0.281 3.719
18 F -0.212 7.212
19 F -0.216 7.216
20 C -0.141 4.141
21 C -0.175 4.175
22 C -0.173 4.173
23 H 0.258 0.742
24 H 0.001 0.999
25 H 0.039 0.961
26 H 0.348 0.652
27 H 0.069 0.931
28 H 0.089 0.911
29 H 0.060 0.940
30 H 0.107 0.893
31 H 0.115 0.885
32 H 0.099 0.901
33 H 0.111 0.889
34 H 0.062 0.938
35 H 0.084 0.916
36 H 0.074 0.926
37 H 0.056 0.944
38 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.517 -10.668 -11.435 16.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.176 4.176
3 Si 0.775 3.225
4 H -0.188 1.188
5 H -0.208 1.208
6 H -0.214 1.214
7 C -0.538 4.538
8 H 0.075 0.925
9 C 0.027 3.973
10 C -0.008 4.008
11 N -0.300 5.300
12 C -0.023 4.023
13 H 0.042 0.958
14 C -0.158 4.158
15 C -0.148 4.148
16 C -0.186 4.186
17 C 0.245 3.755
18 F -0.193 7.193
19 F -0.197 7.197
20 C -0.180 4.180
21 C -0.212 4.212
22 C -0.211 4.211
23 H 0.067 0.933
24 H 0.020 0.980
25 H 0.058 0.942
26 H 0.167 0.833
27 H 0.088 0.912
28 H 0.107 0.893
29 H 0.079 0.921
30 H 0.125 0.875
31 H 0.133 0.867
32 H 0.117 0.883
33 H 0.129 0.871
34 H 0.081 0.919
35 H 0.103 0.897
36 H 0.093 0.907
37 H 0.075 0.925
38 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 4.470 -11.139 -11.032 16.302
hybrid contribution -0.856 1.750 0.040 1.949
sum 3.613 -9.388 -10.992 14.900
Atomic orbital electron populations
1.70118 1.07232 1.27106 1.50486 1.25689 0.95433 1.01902 0.94590
0.85653 0.79428 0.80164 0.77270 1.18834 1.20818 1.21352 1.20732
0.93043 0.89931 1.50115 0.92488 1.18899 0.98029 0.93723 0.86654
1.21172 0.91222 0.94775 0.93593 1.60364 1.22632 1.31830 1.15175
1.21408 0.97280 0.92750 0.90845 0.95771 1.21782 0.98986 1.01697
0.93341 1.21471 1.02651 0.92547 0.98178 1.22545 0.99500 0.99908
0.96668 1.21502 0.81510 0.74716 0.97783 1.92971 1.96237 1.34869
1.95202 1.92961 1.47992 1.85711 1.93055 1.22463 1.03929 0.96460
0.95102 1.22841 0.96482 0.96426 1.05494 1.22464 0.93717 1.01481
1.03431 0.93317 0.98036 0.94223 0.83310 0.91209 0.89270 0.92144
0.87497 0.86696 0.88270 0.87056 0.91917 0.89715 0.90734 0.92525
0.91505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.83 12.94 21.45 0.28 -51.55 16
2 C 0.02 1.27 5.39 84.65 0.46 1.73 16
3 Si 0.95 42.52 29.55 68.60 2.03 44.55 16
4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16
5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
6 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16
7 C -0.50 -26.37 8.33 25.60 0.21 -26.16 16
8 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16
9 C 0.03 1.34 1.56 -52.93 -0.08 1.26 16
10 C 0.12 5.43 5.32 86.30 0.46 5.89 16
11 N -0.67 -24.57 6.28 -491.57 -3.09 -27.66 16
12 C 0.09 2.62 2.37 44.92 0.11 2.73 16
13 H 0.02 0.84 7.52 -2.39 -0.02 0.82 16
14 C -0.12 -2.66 5.19 30.59 0.16 -2.50 16
15 C -0.11 -1.92 5.80 30.59 0.18 -1.74 16
16 C -0.15 -2.55 5.45 30.60 0.17 -2.38 16
17 C 0.28 7.00 2.10 30.61 0.06 7.07 16
18 F -0.21 -5.65 17.06 44.97 0.77 -4.88 16
19 F -0.22 -6.41 16.02 44.97 0.72 -5.69 16
20 C -0.14 -3.87 4.95 30.61 0.15 -3.72 16
21 C -0.18 -7.61 9.96 30.62 0.30 -7.30 16
22 C -0.17 -8.30 9.45 30.62 0.29 -8.01 16
23 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16
24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
25 H 0.04 1.71 7.28 -2.39 -0.02 1.70 16
26 H 0.35 13.26 7.92 -89.69 -0.71 12.55 16
27 H 0.07 1.58 8.12 -2.38 -0.02 1.56 16
28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16
29 H 0.06 1.20 7.80 -2.38 -0.02 1.19 16
30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16
31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16
32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16
34 H 0.06 1.97 7.38 -2.39 -0.02 1.95 16
35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16
36 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16
37 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16
38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16
Total: -1.00 -59.33 312.61 3.50 -55.82
By element:
Atomic # 1 Polarization: 22.21 SS G_CDS: 0.33 Total: 22.54 kcal
Atomic # 6 Polarization: -35.60 SS G_CDS: 2.47 Total: -33.13 kcal
Atomic # 7 Polarization: -76.40 SS G_CDS: -2.81 Total: -79.21 kcal
Atomic # 9 Polarization: -12.06 SS G_CDS: 1.49 Total: -10.57 kcal
Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal
Total: -59.33 3.50 -55.82 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695099702.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -56.755 kcal
(2) G-P(sol) polarization free energy of solvation -59.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.083 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.825 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds