Wall clock time and date at job start Mon Mar 30 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47249 * 2 1 4 4 C 1.52999 * 109.47244 * 239.99871 * 2 1 3 5 5 C 1.50703 * 109.46939 * 175.00044 * 4 2 1 6 6 H 1.07998 * 119.99931 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99960 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99954 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47290 * 89.99985 * 9 7 5 11 11 H 1.48501 * 109.46940 * 210.00078 * 9 7 5 12 12 H 1.48499 * 109.47118 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47098 * 119.99790 * 2 1 3 14 14 C 1.46900 * 111.00062 * 275.00388 * 13 2 1 15 15 C 1.53004 * 109.46810 * 180.02562 * 14 13 2 16 16 H 1.08993 * 110.82117 * 51.65771 * 15 14 13 17 17 C 1.54894 * 110.75410 * 175.00119 * 15 14 13 18 18 C 1.54266 * 104.31305 * 156.31914 * 17 15 14 19 19 H 1.09007 * 117.40995 * 117.51469 * 18 17 15 20 20 C 1.53869 * 106.60031 * 336.32486 * 18 17 15 21 21 H 1.08997 * 121.33682 * 138.62994 * 20 18 17 22 22 C 1.54266 * 106.59800 * 359.97438 * 20 18 17 23 23 C 1.52998 * 118.20104 * 272.14021 * 18 17 15 24 24 F 1.39901 * 117.46315 * 201.21394 * 23 18 17 25 25 F 1.39900 * 117.46108 * 346.02398 * 23 18 17 26 26 H 1.09000 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47477 * 300.00317 * 1 2 3 28 28 H 1.09005 * 109.47012 * 59.99971 * 1 2 3 29 29 H 1.09002 * 109.47076 * 294.99917 * 4 2 1 30 30 H 1.09004 * 109.47049 * 55.00597 * 4 2 1 31 31 H 0.97002 * 119.99740 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00476 * 151.04426 * 13 2 1 33 33 H 1.08993 * 109.47118 * 60.00088 * 14 13 2 34 34 H 1.08998 * 109.46982 * 299.99581 * 14 13 2 35 35 H 1.09002 * 110.48891 * 37.57340 * 17 15 14 36 36 H 1.08998 * 110.48494 * 275.06427 * 17 15 14 37 37 H 1.09005 * 110.48526 * 142.29451 * 22 20 18 38 38 H 1.09007 * 110.48724 * 264.79935 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3577 8 7 5.5412 -1.1011 -2.4127 9 14 3.3016 -2.1087 -3.6952 10 1 2.9410 -1.1639 -4.7825 11 1 4.1600 -3.1895 -4.2431 12 1 2.0655 -2.7003 -3.1233 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2226 2.3469 15 6 2.5961 -0.5329 3.5742 16 1 3.5230 -1.0588 3.3454 17 6 2.7930 0.4318 4.7699 18 6 2.7017 -0.4775 6.0127 19 1 3.5848 -0.5500 6.6475 20 6 1.8934 -1.7173 5.5917 21 1 2.1822 -2.7181 5.9128 22 6 1.5212 -1.5178 4.1080 23 6 1.3209 -0.7377 6.6183 24 9 1.2700 -1.1574 7.9519 25 9 0.2695 0.0878 6.2057 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7516 -1.7716 -1.2055 30 1 1.6054 -0.2617 -2.1370 31 1 6.0256 -1.5079 -3.1481 32 1 2.9173 -1.1205 1.0288 33 1 1.0870 0.6163 2.5525 34 1 2.7587 1.0462 2.1183 35 1 2.0034 1.1831 4.7881 36 1 3.7714 0.9094 4.7177 37 1 1.5725 -2.4651 3.5711 38 1 0.5252 -1.0838 4.0196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695778212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:00 Heat of formation + Delta-G solvation = -86.753252 kcal Electronic energy + Delta-G solvation = -19563.046619 eV Core-core repulsion = 16269.263609 eV Total energy + Delta-G solvation = -3293.783010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.78062 -47.45202 -39.30572 -36.64915 -33.26123 -32.10420 -29.45784 -28.48694 -27.87352 -24.71582 -22.58024 -21.55242 -20.43868 -20.12570 -19.26588 -17.92385 -16.88818 -16.82742 -16.00092 -15.45877 -14.77803 -14.60076 -14.31596 -14.13120 -13.98290 -13.68933 -13.13455 -12.94742 -12.74011 -12.42307 -12.01540 -11.86548 -11.79524 -11.57205 -11.54220 -11.19052 -10.93725 -10.68456 -10.60344 -10.30922 -10.23543 -9.92855 -9.76668 -9.45925 -9.23049 -8.58635 -7.71057 -6.09764 -4.08261 2.85489 2.89381 3.28885 3.36888 3.41566 4.00709 4.09247 4.42087 4.48124 4.67837 4.92421 4.97873 5.11981 5.24089 5.29084 5.35545 5.52980 5.71200 5.75262 5.80684 5.82277 5.88940 5.99093 6.06496 6.12649 6.19938 6.24095 6.41867 6.50069 6.70716 6.78554 7.14783 7.29053 7.73362 7.88620 8.21301 8.45356 8.92004 9.53250 11.03192 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035559 B = 0.004071 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.240146 B = 6875.501823 C = 7201.617098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 H 0.034 0.966 4 C -0.017 4.017 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.083 4.083 16 H 0.085 0.915 17 C -0.094 4.094 18 C -0.159 4.159 19 H 0.133 0.867 20 C -0.157 4.157 21 H 0.132 0.868 22 C -0.081 4.081 23 C 0.207 3.793 24 F -0.164 7.164 25 F -0.161 7.161 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.016 0.984 31 H 0.263 0.737 32 H 0.357 0.643 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 0.636 15.753 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.052 0.948 4 C -0.055 4.055 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.102 4.102 16 H 0.103 0.897 17 C -0.132 4.132 18 C -0.178 4.178 19 H 0.150 0.850 20 C -0.176 4.176 21 H 0.150 0.850 22 C -0.118 4.118 23 C 0.170 3.830 24 F -0.144 7.144 25 F -0.141 7.141 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.833 0.346 15.823 17.659 hybrid contribution 0.334 0.117 -0.670 0.758 sum -7.499 0.464 15.153 16.913 Atomic orbital electron populations 1.21828 0.96684 1.01328 0.99749 1.21373 0.93181 0.96010 0.90766 0.94800 1.19769 0.96931 0.96260 0.92505 1.21082 0.89914 1.35259 1.09921 0.91295 1.25006 0.94677 0.95668 0.97879 1.69914 1.06611 1.45247 1.32295 0.86763 0.80310 0.79898 0.82225 1.20418 1.21464 1.18840 1.60570 1.34989 1.31996 1.04163 1.21899 0.99683 0.94041 0.90577 1.22339 0.98855 0.95252 0.93769 0.89677 1.22051 1.03202 0.97286 0.90702 1.24613 0.93441 0.99866 0.99896 0.84965 1.24755 1.00618 0.96461 0.95720 0.84980 1.22020 0.99538 1.01249 0.89007 1.20313 0.87359 0.97070 0.78209 1.93005 1.96799 1.90053 1.34560 1.92993 1.59079 1.72682 1.89361 0.92670 0.94122 0.93393 0.95626 0.96585 0.92723 0.82155 0.91676 0.95381 0.90347 0.90024 0.89378 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.41 37.16 0.35 -1.93 16 2 C 0.10 1.87 2.59 -67.72 -0.18 1.69 16 3 H 0.03 0.69 7.80 -51.93 -0.40 0.29 16 4 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 5 C -0.52 -14.19 8.67 -34.44 -0.30 -14.49 16 6 H 0.07 2.00 7.73 -52.49 -0.41 1.59 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 13 N -0.68 -12.09 6.24 -106.73 -0.67 -12.75 16 14 C 0.07 0.99 4.93 -3.82 -0.02 0.98 16 15 C -0.08 -1.02 3.07 -88.42 -0.27 -1.29 16 16 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.09 -0.99 5.95 -25.07 -0.15 -1.14 16 18 C -0.16 -1.57 6.92 -89.51 -0.62 -2.19 16 19 H 0.13 1.08 8.14 -51.92 -0.42 0.66 16 20 C -0.16 -1.60 6.92 -89.50 -0.62 -2.22 16 21 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 22 C -0.08 -0.93 5.90 -24.87 -0.15 -1.08 16 23 C 0.21 2.36 5.13 -26.73 -0.14 2.22 16 24 F -0.16 -1.97 17.60 2.25 0.04 -1.93 16 25 F -0.16 -2.07 16.19 2.25 0.04 -2.04 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 30 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.36 7.05 7.21 -39.29 -0.28 6.77 16 33 H 0.06 0.93 7.29 -51.93 -0.38 0.55 16 34 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 35 H 0.08 0.85 7.56 -51.93 -0.39 0.46 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.96 7.46 -51.93 -0.39 0.58 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -28.72 311.47 -8.03 -36.75 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.95 Total: 2.95 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -2.29 Total: -18.09 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.11 Total: -39.02 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.96 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.72 -8.03 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.000 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds