Wall clock time and date at job start Mon Mar 30 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47249 * 2 1 4 4 C 1.52999 * 109.47244 * 239.99871 * 2 1 3 5 5 C 1.50703 * 109.46939 * 175.00044 * 4 2 1 6 6 H 1.07998 * 119.99931 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99960 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99954 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47290 * 89.99985 * 9 7 5 11 11 H 1.48501 * 109.46940 * 210.00078 * 9 7 5 12 12 H 1.48499 * 109.47118 * 329.99702 * 9 7 5 13 13 N 1.46899 * 109.47098 * 119.99790 * 2 1 3 14 14 C 1.46900 * 111.00062 * 275.00388 * 13 2 1 15 15 C 1.53004 * 109.46810 * 180.02562 * 14 13 2 16 16 H 1.08993 * 110.82117 * 51.65771 * 15 14 13 17 17 C 1.54894 * 110.75410 * 175.00119 * 15 14 13 18 18 C 1.54266 * 104.31305 * 156.31914 * 17 15 14 19 19 H 1.09007 * 117.40995 * 117.51469 * 18 17 15 20 20 C 1.53869 * 106.60031 * 336.32486 * 18 17 15 21 21 H 1.08997 * 121.33682 * 138.62994 * 20 18 17 22 22 C 1.54266 * 106.59800 * 359.97438 * 20 18 17 23 23 C 1.52998 * 118.20104 * 272.14021 * 18 17 15 24 24 F 1.39901 * 117.46315 * 201.21394 * 23 18 17 25 25 F 1.39900 * 117.46108 * 346.02398 * 23 18 17 26 26 H 1.09000 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47477 * 300.00317 * 1 2 3 28 28 H 1.09005 * 109.47012 * 59.99971 * 1 2 3 29 29 H 1.09002 * 109.47076 * 294.99917 * 4 2 1 30 30 H 1.09004 * 109.47049 * 55.00597 * 4 2 1 31 31 H 0.97002 * 119.99740 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00476 * 151.04426 * 13 2 1 33 33 H 1.08993 * 109.47118 * 60.00088 * 14 13 2 34 34 H 1.08998 * 109.46982 * 299.99581 * 14 13 2 35 35 H 1.09002 * 110.48891 * 37.57340 * 17 15 14 36 36 H 1.08998 * 110.48494 * 275.06427 * 17 15 14 37 37 H 1.09005 * 110.48526 * 142.29451 * 22 20 18 38 38 H 1.09007 * 110.48724 * 264.79935 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3577 8 7 5.5412 -1.1011 -2.4127 9 14 3.3016 -2.1087 -3.6952 10 1 2.9410 -1.1639 -4.7825 11 1 4.1600 -3.1895 -4.2431 12 1 2.0655 -2.7003 -3.1233 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2226 2.3469 15 6 2.5961 -0.5329 3.5742 16 1 3.5230 -1.0588 3.3454 17 6 2.7930 0.4318 4.7699 18 6 2.7017 -0.4775 6.0127 19 1 3.5848 -0.5500 6.6475 20 6 1.8934 -1.7173 5.5917 21 1 2.1822 -2.7181 5.9128 22 6 1.5212 -1.5178 4.1080 23 6 1.3209 -0.7377 6.6183 24 9 1.2700 -1.1574 7.9519 25 9 0.2695 0.0878 6.2057 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.7516 -1.7716 -1.2055 30 1 1.6054 -0.2617 -2.1370 31 1 6.0256 -1.5079 -3.1481 32 1 2.9173 -1.1205 1.0288 33 1 1.0870 0.6163 2.5525 34 1 2.7587 1.0462 2.1183 35 1 2.0034 1.1831 4.7881 36 1 3.7714 0.9094 4.7177 37 1 1.5725 -2.4651 3.5711 38 1 0.5252 -1.0838 4.0196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695778212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:59 Heat of formation + Delta-G solvation = -103.112234 kcal Electronic energy + Delta-G solvation = -19563.755997 eV Core-core repulsion = 16269.263609 eV Total energy + Delta-G solvation = -3294.492388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.68568 -48.37014 -40.24482 -38.11303 -34.95602 -33.71569 -30.83709 -29.58238 -29.36548 -25.96579 -24.36504 -22.54165 -21.44003 -21.12253 -20.73710 -18.93824 -18.80124 -17.80389 -16.90619 -16.72975 -16.40350 -15.95116 -15.74610 -15.23573 -15.02464 -14.65655 -14.60311 -14.16187 -13.95609 -13.82745 -13.61366 -13.39256 -13.07498 -12.94470 -12.49078 -12.44188 -12.33282 -12.18718 -11.83074 -11.73475 -11.57882 -11.25260 -11.21082 -11.06828 -10.77169 -10.74455 -9.16302 -8.26891 -6.29670 1.37816 1.40322 1.51899 2.00581 2.04855 2.38488 3.06766 3.16476 3.21912 3.48899 3.62166 3.99728 4.10956 4.12991 4.27100 4.30132 4.38364 4.54366 4.63017 4.70737 4.74451 4.80795 4.86873 4.93894 5.03817 5.05683 5.06949 5.14393 5.25141 5.27034 5.36045 5.49204 5.53221 5.70214 6.26098 6.40673 6.64448 6.76934 7.35021 8.89064 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.035559 B = 0.004071 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.240146 B = 6875.501823 C = 7201.617098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.097 3.903 3 H 0.019 0.981 4 C -0.013 4.013 5 C -0.523 4.523 6 H 0.035 0.965 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.681 5.681 14 C 0.070 3.930 15 C -0.081 4.081 16 H 0.079 0.921 17 C -0.092 4.092 18 C -0.146 4.146 19 H 0.155 0.845 20 C -0.150 4.150 21 H 0.151 0.849 22 C -0.078 4.078 23 C 0.192 3.808 24 F -0.168 7.168 25 F -0.173 7.173 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.019 0.981 31 H 0.265 0.735 32 H 0.342 0.658 33 H 0.073 0.927 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 0.098 16.196 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.013 4.013 3 H 0.037 0.963 4 C -0.051 4.051 5 C -0.561 4.561 6 H 0.054 0.946 7 C -0.187 4.187 8 N -0.590 5.590 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.313 5.313 14 C -0.059 4.059 15 C -0.099 4.099 16 H 0.097 0.903 17 C -0.130 4.130 18 C -0.165 4.165 19 H 0.173 0.827 20 C -0.169 4.169 21 H 0.169 0.831 22 C -0.115 4.115 23 C 0.155 3.845 24 F -0.149 7.149 25 F -0.154 7.154 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.091 0.909 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.176 -0.179 16.285 18.693 hybrid contribution 0.774 0.349 -0.754 1.136 sum -8.402 0.171 15.531 17.659 Atomic orbital electron populations 1.21735 0.93914 1.01902 1.01151 1.21324 0.95310 0.94662 0.89983 0.96309 1.19716 0.94116 0.96664 0.94568 1.21352 0.92075 1.33949 1.08683 0.94635 1.25899 0.95436 0.96855 1.00557 1.70056 1.08443 1.46969 1.33484 0.85716 0.79399 0.78639 0.79197 1.19631 1.21311 1.17138 1.60656 1.33870 1.32429 1.04325 1.21945 0.99986 0.93517 0.90452 1.22258 0.98682 0.95650 0.93349 0.90307 1.22017 1.03791 0.96980 0.90179 1.24688 0.93388 0.99035 0.99392 0.82725 1.24769 1.00209 0.97507 0.94436 0.83094 1.21937 0.98813 1.00734 0.90044 1.20555 0.87815 0.97853 0.78235 1.92992 1.96837 1.90135 1.34907 1.92964 1.59792 1.73117 1.89476 0.92445 0.92410 0.92388 0.95682 0.96232 0.92655 0.83849 0.90853 0.96581 0.90584 0.88907 0.89672 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.41 71.98 0.68 -3.30 16 2 C 0.10 3.69 2.59 44.91 0.12 3.81 16 3 H 0.02 0.77 7.80 -2.39 -0.02 0.75 16 4 C -0.01 -0.59 3.64 29.85 0.11 -0.48 16 5 C -0.52 -28.72 8.67 25.60 0.22 -28.50 16 6 H 0.04 2.13 7.73 -2.91 -0.02 2.11 16 7 C 0.01 0.55 5.47 84.66 0.46 1.01 16 8 N -0.95 -58.02 13.96 21.45 0.30 -57.73 16 9 Si 0.95 43.61 27.47 68.60 1.88 45.50 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 13 N -0.68 -23.87 6.24 -491.58 -3.07 -26.93 16 14 C 0.07 2.03 4.93 86.30 0.43 2.45 16 15 C -0.08 -1.89 3.07 -9.37 -0.03 -1.92 16 16 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.09 -1.78 5.95 31.67 0.19 -1.59 16 18 C -0.15 -2.55 6.92 -10.07 -0.07 -2.62 16 19 H 0.16 2.04 8.14 -2.38 -0.02 2.02 16 20 C -0.15 -2.77 6.92 -10.07 -0.07 -2.84 16 21 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 22 C -0.08 -1.69 5.90 31.80 0.19 -1.51 16 23 C 0.19 4.05 5.13 30.60 0.16 4.20 16 24 F -0.17 -3.77 17.60 44.97 0.79 -2.98 16 25 F -0.17 -4.27 16.19 44.97 0.73 -3.54 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.58 7.45 -2.39 -0.02 1.56 16 28 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 30 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 32 H 0.34 13.74 7.21 -89.69 -0.65 13.09 16 33 H 0.07 2.00 7.29 -2.39 -0.02 1.98 16 34 H 0.02 0.50 8.06 -2.39 -0.02 0.48 16 35 H 0.08 1.54 7.56 -2.39 -0.02 1.52 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.07 1.65 7.46 -2.38 -0.02 1.63 16 Total: -1.00 -61.58 311.47 3.36 -58.22 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.34 Total: 18.75 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 2.38 Total: -31.29 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.77 Total: -84.66 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 1.52 Total: -6.52 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Total: -61.58 3.36 -58.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.895 kcal (2) G-P(sol) polarization free energy of solvation -61.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds