Wall clock time and date at job start Mon Mar 30 2020 07:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46777 * 2 1 4 4 C 1.53002 * 109.47107 * 119.99401 * 2 1 3 5 5 C 1.50694 * 109.47150 * 185.00053 * 4 2 1 6 6 H 1.08004 * 120.00158 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00310 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47233 * 89.99901 * 9 7 5 11 11 H 1.48500 * 109.47138 * 209.99983 * 9 7 5 12 12 H 1.48498 * 109.47226 * 329.99775 * 9 7 5 13 13 N 1.46897 * 109.47437 * 239.99779 * 2 1 3 14 14 C 1.46895 * 111.00019 * 84.99878 * 13 2 1 15 15 C 1.52999 * 109.47301 * 180.02562 * 14 13 2 16 16 H 1.08994 * 110.67184 * 51.76469 * 15 14 13 17 17 C 1.54889 * 110.75969 * 175.00244 * 15 14 13 18 18 C 1.54267 * 104.19820 * 156.25275 * 17 15 14 19 19 H 1.08998 * 117.40645 * 116.36756 * 18 17 15 20 20 C 1.53871 * 106.59797 * 336.39141 * 18 17 15 21 21 H 1.09002 * 121.32987 * 138.62842 * 20 18 17 22 22 C 1.54271 * 106.59838 * 0.56380 * 20 18 17 23 23 C 1.53000 * 118.20087 * 272.21093 * 18 17 15 24 24 F 1.39898 * 117.45783 * 346.01717 * 23 18 17 25 25 F 1.39894 * 117.45795 * 201.21763 * 23 18 17 26 26 H 1.08999 * 109.47128 * 300.00533 * 1 2 3 27 27 H 1.09002 * 109.46700 * 60.00257 * 1 2 3 28 28 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47126 * 305.00700 * 4 2 1 30 30 H 1.09009 * 109.46649 * 65.00169 * 4 2 1 31 31 H 0.96997 * 120.00378 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99929 * 208.95494 * 13 2 1 33 33 H 1.08996 * 109.47406 * 59.99916 * 14 13 2 34 34 H 1.09001 * 109.47515 * 300.00317 * 14 13 2 35 35 H 1.09001 * 110.48728 * 37.57095 * 17 15 14 36 36 H 1.09002 * 110.60011 * 274.98919 * 17 15 14 37 37 H 1.08996 * 110.48427 * 142.28959 * 22 20 18 38 38 H 1.09002 * 110.48382 * 264.93092 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0854 0.5396 7 6 4.2304 -1.1933 2.3580 8 7 3.5764 -1.8375 3.2997 9 14 6.0920 -1.0609 2.4370 10 1 6.4697 0.1613 3.1913 11 1 6.6446 -2.2564 3.1230 12 1 6.6416 -0.9823 1.0598 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3468 15 6 2.5952 -0.5333 -3.5744 16 1 2.0179 -1.4438 -3.7345 17 6 2.5551 0.3704 -4.8317 18 6 3.6090 -0.2462 -5.7746 19 1 3.2570 -0.6548 -6.7218 20 6 4.5938 -1.0242 -4.8842 21 1 4.9744 -2.0018 -5.1800 22 6 4.0957 -0.8652 -3.4328 23 6 5.0598 0.2210 -5.6414 24 9 5.2985 1.3790 -4.8936 25 9 5.9028 0.0294 -6.7413 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 4.0608 -2.2448 4.0348 32 1 2.9174 -1.1205 -1.0286 33 1 2.7589 1.0461 -2.1182 34 1 1.0872 0.6162 -2.5525 35 1 2.8259 1.3943 -4.5744 36 1 1.5678 0.3424 -5.2928 37 1 4.2409 -1.7910 -2.8762 38 1 4.6097 -0.0389 -2.9415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695778215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:02 Heat of formation + Delta-G solvation = -90.436966 kcal Electronic energy + Delta-G solvation = -19720.006385 eV Core-core repulsion = 16426.063637 eV Total energy + Delta-G solvation = -3293.942747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.75920 -47.42974 -39.36663 -36.54381 -33.28377 -32.06897 -29.26279 -28.49739 -27.38909 -24.70816 -22.90940 -21.60222 -20.48602 -19.95759 -19.26789 -17.91864 -16.93745 -16.35397 -15.99082 -15.25254 -15.19423 -14.64078 -14.38398 -14.10859 -13.71886 -13.37434 -13.16059 -12.95860 -12.85558 -12.44866 -11.93353 -11.70003 -11.61787 -11.49958 -11.28923 -11.17814 -10.88241 -10.61805 -10.52896 -10.43446 -10.29904 -10.08521 -9.93246 -9.22532 -9.07488 -8.40705 -7.66186 -6.03882 -4.07094 2.84890 2.91066 3.28906 3.36056 3.38174 4.00727 4.08163 4.42127 4.48727 4.71584 4.88411 4.97956 5.14558 5.26003 5.31316 5.38323 5.50418 5.68202 5.75798 5.80789 5.87459 5.93484 6.01207 6.10397 6.20033 6.23524 6.33754 6.44733 6.56479 6.92677 6.94781 7.51720 7.62803 7.95646 8.05307 8.26944 8.36598 8.99141 9.57274 11.06972 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005473 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.808243 B = 5114.681387 C = 6248.648404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.067 3.933 15 C -0.083 4.083 16 H 0.090 0.910 17 C -0.093 4.093 18 C -0.160 4.160 19 H 0.133 0.867 20 C -0.155 4.155 21 H 0.133 0.867 22 C -0.098 4.098 23 C 0.210 3.790 24 F -0.159 7.159 25 F -0.163 7.163 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.021 0.979 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.354 0.646 33 H 0.025 0.975 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 2.610 -17.344 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.102 4.102 16 H 0.108 0.892 17 C -0.131 4.131 18 C -0.179 4.179 19 H 0.151 0.849 20 C -0.174 4.174 21 H 0.151 0.849 22 C -0.135 4.135 23 C 0.173 3.827 24 F -0.140 7.140 25 F -0.143 7.143 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.175 0.825 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.945 2.286 -17.335 17.593 hybrid contribution 2.166 0.736 0.181 2.295 sum 0.221 3.022 -17.153 17.419 Atomic orbital electron populations 1.21789 0.96754 1.01283 0.99434 1.21613 0.93331 0.95883 0.91459 0.95352 1.19283 0.95410 0.96191 0.90845 1.21162 0.92214 1.34449 1.08358 0.93047 1.24978 0.98172 0.95176 0.95708 1.69955 1.35499 1.35563 1.11932 0.86663 0.85978 0.77560 0.78221 1.20749 1.21184 1.19860 1.60577 1.34684 1.32058 1.04408 1.21906 0.99667 0.94018 0.90709 1.22196 0.95339 0.98974 0.93681 0.89154 1.22044 0.97242 0.99830 0.93963 1.24618 0.89465 1.01861 1.01947 0.84940 1.24652 1.00281 0.95607 0.96820 0.84894 1.22038 0.95562 1.03854 0.92088 1.20285 0.91714 0.85712 0.84956 1.93007 1.95214 1.50261 1.75501 1.93005 1.73011 1.94969 1.53364 0.93383 0.94537 0.92663 0.96097 0.95590 0.92942 0.82487 0.95635 0.91620 0.90380 0.90001 0.89156 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.42 37.16 0.35 -2.02 16 2 C 0.09 1.76 2.59 -67.71 -0.18 1.59 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.50 4.57 -27.89 -0.13 0.38 16 5 C -0.52 -14.16 8.12 -34.44 -0.28 -14.44 16 6 H 0.05 1.35 7.49 -52.48 -0.39 0.96 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -12.50 6.31 -106.73 -0.67 -13.17 16 14 C 0.07 0.99 4.97 -3.83 -0.02 0.97 16 15 C -0.08 -1.01 3.08 -88.93 -0.27 -1.28 16 16 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.09 -0.95 5.97 -25.07 -0.15 -1.10 16 18 C -0.16 -1.58 6.92 -89.50 -0.62 -2.20 16 19 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.15 -1.69 6.91 -89.50 -0.62 -2.31 16 21 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 22 C -0.10 -1.24 5.39 -25.37 -0.14 -1.38 16 23 C 0.21 2.55 5.13 -26.73 -0.14 2.41 16 24 F -0.16 -2.25 16.25 2.25 0.04 -2.21 16 25 F -0.16 -2.06 17.60 2.25 0.04 -2.02 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.56 7.45 -51.93 -0.39 0.18 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.35 7.03 6.60 -39.29 -0.26 6.77 16 33 H 0.03 0.41 7.89 -51.93 -0.41 0.00 16 34 H 0.07 0.92 7.44 -51.93 -0.39 0.54 16 35 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 38 H 0.08 1.12 7.45 -51.93 -0.39 0.73 16 LS Contribution 314.05 15.07 4.73 4.73 Total: -1.00 -28.77 314.05 -8.39 -37.16 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -5.96 Total: 2.54 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.29 Total: -17.78 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.06 Total: -38.67 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.08 Total: -4.23 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.77 -8.39 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.276 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds