Wall clock time and date at job start Mon Mar 30 2020 07:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46777 * 2 1 4 4 C 1.53002 * 109.47107 * 119.99401 * 2 1 3 5 5 C 1.50694 * 109.47150 * 185.00053 * 4 2 1 6 6 H 1.08004 * 120.00158 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99788 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00310 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47233 * 89.99901 * 9 7 5 11 11 H 1.48500 * 109.47138 * 209.99983 * 9 7 5 12 12 H 1.48498 * 109.47226 * 329.99775 * 9 7 5 13 13 N 1.46897 * 109.47437 * 239.99779 * 2 1 3 14 14 C 1.46895 * 111.00019 * 84.99878 * 13 2 1 15 15 C 1.52999 * 109.47301 * 180.02562 * 14 13 2 16 16 H 1.08994 * 110.67184 * 51.76469 * 15 14 13 17 17 C 1.54889 * 110.75969 * 175.00244 * 15 14 13 18 18 C 1.54267 * 104.19820 * 156.25275 * 17 15 14 19 19 H 1.08998 * 117.40645 * 116.36756 * 18 17 15 20 20 C 1.53871 * 106.59797 * 336.39141 * 18 17 15 21 21 H 1.09002 * 121.32987 * 138.62842 * 20 18 17 22 22 C 1.54271 * 106.59838 * 0.56380 * 20 18 17 23 23 C 1.53000 * 118.20087 * 272.21093 * 18 17 15 24 24 F 1.39898 * 117.45783 * 346.01717 * 23 18 17 25 25 F 1.39894 * 117.45795 * 201.21763 * 23 18 17 26 26 H 1.08999 * 109.47128 * 300.00533 * 1 2 3 27 27 H 1.09002 * 109.46700 * 60.00257 * 1 2 3 28 28 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47126 * 305.00700 * 4 2 1 30 30 H 1.09009 * 109.46649 * 65.00169 * 4 2 1 31 31 H 0.96997 * 120.00378 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99929 * 208.95494 * 13 2 1 33 33 H 1.08996 * 109.47406 * 59.99916 * 14 13 2 34 34 H 1.09001 * 109.47515 * 300.00317 * 14 13 2 35 35 H 1.09001 * 110.48728 * 37.57095 * 17 15 14 36 36 H 1.09002 * 110.60011 * 274.98919 * 17 15 14 37 37 H 1.08996 * 110.48427 * 142.28959 * 22 20 18 38 38 H 1.09002 * 110.48382 * 264.93092 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0854 0.5396 7 6 4.2304 -1.1933 2.3580 8 7 3.5764 -1.8375 3.2997 9 14 6.0920 -1.0609 2.4370 10 1 6.4697 0.1613 3.1913 11 1 6.6446 -2.2564 3.1230 12 1 6.6416 -0.9823 1.0598 13 7 2.0198 -0.6925 -1.1994 14 6 2.0826 0.2225 -2.3468 15 6 2.5952 -0.5333 -3.5744 16 1 2.0179 -1.4438 -3.7345 17 6 2.5551 0.3704 -4.8317 18 6 3.6090 -0.2462 -5.7746 19 1 3.2570 -0.6548 -6.7218 20 6 4.5938 -1.0242 -4.8842 21 1 4.9744 -2.0018 -5.1800 22 6 4.0957 -0.8652 -3.4328 23 6 5.0598 0.2210 -5.6414 24 9 5.2985 1.3790 -4.8936 25 9 5.9028 0.0294 -6.7413 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7715 1.2057 31 1 4.0608 -2.2448 4.0348 32 1 2.9174 -1.1205 -1.0286 33 1 2.7589 1.0461 -2.1182 34 1 1.0872 0.6162 -2.5525 35 1 2.8259 1.3943 -4.5744 36 1 1.5678 0.3424 -5.2928 37 1 4.2409 -1.7910 -2.8762 38 1 4.6097 -0.0389 -2.9415 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695778215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:02 Heat of formation + Delta-G solvation = -106.487895 kcal Electronic energy + Delta-G solvation = -19720.702405 eV Core-core repulsion = 16426.063637 eV Total energy + Delta-G solvation = -3294.638768 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.71357 -48.40297 -40.32059 -38.06947 -35.03015 -33.63492 -30.60832 -29.48373 -29.19790 -26.02615 -24.77703 -22.59959 -21.47619 -21.01020 -20.76776 -18.83247 -18.50735 -17.91120 -16.95475 -16.77564 -16.31372 -16.22373 -15.91824 -15.09893 -14.84908 -14.65989 -14.35049 -14.27231 -13.91094 -13.68270 -13.49044 -13.38860 -13.22995 -12.83440 -12.60641 -12.44167 -12.42859 -12.33191 -11.98756 -11.82774 -11.60386 -11.17075 -11.13454 -10.96209 -10.80307 -10.57593 -9.16302 -8.19607 -6.29672 1.38466 1.39175 1.49427 1.97964 2.03538 2.39269 3.11421 3.16386 3.19104 3.48193 3.60295 3.97693 4.09071 4.18071 4.23059 4.35135 4.41250 4.54647 4.63246 4.66801 4.76416 4.80213 4.93277 4.95887 5.02297 5.04514 5.05459 5.19877 5.24587 5.36395 5.46293 5.51745 5.58655 5.85184 6.21499 6.44307 6.68741 6.85668 7.39046 8.91969 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.005473 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.808243 B = 5114.681387 C = 6248.648404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.020 0.980 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.264 1.264 13 N -0.683 5.683 14 C 0.068 3.932 15 C -0.076 4.076 16 H 0.098 0.902 17 C -0.089 4.089 18 C -0.134 4.134 19 H 0.164 0.836 20 C -0.154 4.154 21 H 0.152 0.848 22 C -0.102 4.102 23 C 0.185 3.815 24 F -0.177 7.177 25 F -0.168 7.168 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.050 0.950 29 H -0.007 1.007 30 H -0.001 1.001 31 H 0.263 0.737 32 H 0.342 0.658 33 H 0.012 0.988 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.554 2.691 -19.463 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.038 0.962 4 C -0.011 4.011 5 C -0.570 4.570 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.188 1.188 13 N -0.315 5.315 14 C -0.061 4.061 15 C -0.095 4.095 16 H 0.117 0.883 17 C -0.127 4.127 18 C -0.153 4.153 19 H 0.181 0.819 20 C -0.173 4.173 21 H 0.170 0.830 22 C -0.139 4.139 23 C 0.149 3.851 24 F -0.158 7.158 25 F -0.148 7.148 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.012 0.988 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.126 2.382 -19.473 19.733 hybrid contribution 2.206 0.727 0.864 2.478 sum 0.080 3.109 -18.610 18.868 Atomic orbital electron populations 1.21698 0.94312 1.01507 1.00928 1.21435 0.95266 0.94634 0.90317 0.96171 1.19149 0.94746 0.94857 0.92332 1.21491 0.93303 1.33941 1.08262 0.92695 1.25831 1.03014 0.94869 0.95398 1.70080 1.37447 1.36681 1.12688 0.85600 0.80199 0.77566 0.78614 1.20329 1.20785 1.18778 1.60632 1.33865 1.32590 1.04426 1.21997 1.00381 0.93356 0.90391 1.22116 0.94675 0.99363 0.93305 0.88330 1.22046 0.98836 0.98749 0.93089 1.24745 0.87916 0.99904 1.02711 0.81863 1.24654 1.00842 0.96039 0.95740 0.83005 1.22000 0.96093 1.02581 0.93256 1.20673 0.93451 0.85667 0.85357 1.92966 1.95458 1.51315 1.76054 1.92989 1.73401 1.94957 1.53482 0.93177 0.91762 0.93046 0.98831 0.98215 0.92826 0.83825 0.96977 0.90108 0.91280 0.87223 0.89834 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.42 71.98 0.68 -3.63 16 2 C 0.09 3.80 2.59 44.92 0.12 3.92 16 3 H 0.02 0.85 7.80 -2.38 -0.02 0.84 16 4 C 0.03 1.37 4.57 29.85 0.14 1.51 16 5 C -0.53 -29.28 8.12 25.60 0.21 -29.07 16 6 H 0.05 2.92 7.49 -2.91 -0.02 2.90 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.68 -24.62 6.31 -491.58 -3.10 -27.72 16 14 C 0.07 1.92 4.97 86.30 0.43 2.35 16 15 C -0.08 -1.69 3.08 -9.70 -0.03 -1.72 16 16 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 17 C -0.09 -1.55 5.97 31.67 0.19 -1.36 16 18 C -0.13 -2.22 6.92 -10.07 -0.07 -2.29 16 19 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 20 C -0.15 -3.05 6.91 -10.07 -0.07 -3.12 16 21 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 22 C -0.10 -2.49 5.39 31.48 0.17 -2.32 16 23 C 0.18 4.20 5.13 30.60 0.16 4.35 16 24 F -0.18 -4.94 16.25 44.97 0.73 -4.21 16 25 F -0.17 -3.98 17.60 44.97 0.79 -3.19 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.06 1.83 7.45 -2.39 -0.02 1.81 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 30 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.34 13.70 6.60 -89.70 -0.59 13.11 16 33 H 0.01 0.38 7.89 -2.39 -0.02 0.36 16 34 H 0.08 2.05 7.44 -2.39 -0.02 2.03 16 35 H 0.07 1.37 7.56 -2.39 -0.02 1.35 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 38 H 0.05 1.59 7.45 -2.39 -0.02 1.57 16 Total: -1.00 -62.81 314.05 3.56 -59.25 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.45 Total: 15.97 kcal Atomic # 6 Polarization: -32.89 SS G_CDS: 2.38 Total: -30.51 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -2.82 Total: -83.28 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 1.52 Total: -7.40 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.81 3.56 -59.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695778215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.242 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds