Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99718 * 2 1 4 4 C 1.47201 * 109.47216 * 180.02562 * 3 2 1 5 5 C 3.40056 * 161.18468 * 359.97438 * 2 1 3 6 6 C 4.78777 * 168.18127 * 359.97438 * 2 1 3 7 7 N 1.46500 * 109.47255 * 335.06788 * 6 5 4 8 8 C 1.46498 * 120.00184 * 270.00270 * 7 6 5 9 9 C 1.50705 * 109.46994 * 269.99731 * 8 7 6 10 10 H 1.07998 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99774 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99944 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00460 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47419 * 89.99441 * 13 11 9 15 15 H 1.48497 * 109.47134 * 209.99996 * 13 11 9 16 16 H 1.48503 * 109.46709 * 329.99763 * 13 11 9 17 17 C 1.39678 * 120.00138 * 89.99842 * 7 6 5 18 18 C 1.38915 * 120.06984 * 0.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47808 * 60.00000 * 1 2 3 24 24 H 1.09005 * 109.46851 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47448 * 299.99429 * 1 2 3 26 26 H 1.09001 * 109.47247 * 60.00124 * 3 2 1 27 27 H 1.09006 * 109.46943 * 300.00401 * 3 2 1 28 28 H 1.08994 * 109.47130 * 215.07160 * 6 5 4 29 29 H 1.09004 * 109.47330 * 95.06748 * 6 5 4 30 30 H 1.08995 * 109.47144 * 29.99687 * 8 7 6 31 31 H 1.09000 * 109.47505 * 149.99538 * 8 7 6 32 32 H 0.97001 * 120.00260 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 34 34 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 37 37 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.4776 1.1894 -0.0006 5 6 4.6478 1.0967 -0.0005 6 6 6.1152 0.9806 -0.0004 7 7 6.5033 -0.3065 0.5818 8 6 6.7394 -0.4169 2.0234 9 6 8.1896 -0.1324 2.3182 10 1 8.8675 0.1072 1.5123 11 6 8.6508 -0.1769 3.6167 12 7 9.9162 0.0719 3.8740 13 14 7.4782 -0.5906 5.0108 14 1 7.4656 -2.0596 5.2276 15 1 7.9261 0.0893 6.2526 16 1 6.1105 -0.1303 4.6601 17 6 6.6480 -1.4284 -0.2375 18 6 6.4249 -1.3253 -1.6047 19 6 6.5694 -2.4364 -2.4121 20 6 6.9363 -3.6505 -1.8609 21 6 7.1591 -3.7567 -0.5002 22 6 7.0164 -2.6495 0.3128 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6884 1.8464 -0.8900 28 1 6.5438 1.7904 0.5900 29 1 6.4847 1.0424 -1.0241 30 1 6.1134 0.3032 2.5503 31 1 6.4920 -1.4251 2.3560 32 1 10.2408 0.0403 4.7876 33 1 6.1345 -0.3784 -2.0352 34 1 6.3958 -2.3571 -3.4751 35 1 7.0490 -4.5179 -2.4946 36 1 7.4459 -4.7062 -0.0730 37 1 7.1902 -2.7332 1.3755 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696491761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 45.599838 kcal Electronic energy + Delta-G solvation = -18386.350718 eV Core-core repulsion = 15516.703405 eV Total energy + Delta-G solvation = -2869.647314 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.96393 -38.03132 -36.03874 -33.39374 -32.47988 -30.53536 -29.60735 -29.00443 -27.37896 -25.88135 -24.69859 -22.60808 -21.45956 -19.98210 -17.45687 -16.99693 -16.82713 -16.54345 -16.03544 -15.26711 -15.01127 -14.77876 -14.06842 -14.00296 -13.34451 -13.18359 -12.96857 -12.88382 -12.47924 -12.29914 -12.05776 -11.71954 -11.59814 -11.14878 -10.85807 -10.64468 -10.38395 -10.31737 -10.08372 -9.94056 -9.62780 -9.35377 -9.02175 -8.66036 -8.30659 -6.55703 -6.15148 -4.15183 2.06099 2.24191 2.49925 2.88276 3.22428 3.30220 3.32546 3.87950 4.16531 4.32664 4.47396 4.65792 5.02396 5.10734 5.15788 5.18787 5.31444 5.44336 5.47062 5.50867 5.64418 5.79110 5.86678 5.96592 6.07213 6.23326 6.31274 6.53707 6.74654 6.77031 6.97219 7.03505 7.08347 7.23614 7.51073 7.53837 7.79686 7.99114 8.27858 8.49088 8.92289 9.44981 10.97730 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.006894 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.802762 B = 4060.584137 C = 5490.311353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.185 3.815 4 C -0.209 4.209 5 C -0.142 4.142 6 C 0.230 3.770 7 N -0.602 5.602 8 C 0.222 3.778 9 C -0.535 4.535 10 H 0.079 0.921 11 C 0.075 3.925 12 N -0.894 5.894 13 Si 0.869 3.131 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.236 3.764 18 C -0.210 4.210 19 C -0.079 4.079 20 C -0.197 4.197 21 C -0.078 4.078 22 C -0.182 4.182 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 -0.006 -9.002 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.109 3.891 4 C -0.211 4.211 5 C -0.144 4.144 6 C 0.106 3.894 7 N -0.308 5.308 8 C 0.101 3.899 9 C -0.573 4.573 10 H 0.097 0.903 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.696 3.304 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.190 1.190 17 C 0.132 3.868 18 C -0.233 4.233 19 C -0.098 4.098 20 C -0.217 4.217 21 C -0.097 4.097 22 C -0.204 4.204 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.112 0.888 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.116 0.010 -8.687 16.575 hybrid contribution -0.700 0.072 0.914 1.154 sum -14.816 0.081 -7.772 16.731 Atomic orbital electron populations 1.22766 0.80667 1.03063 0.99993 1.88029 1.19726 1.27139 1.95428 1.18974 0.84090 0.85137 1.00855 1.21586 0.92690 1.03591 1.03209 1.23654 0.94688 0.96537 0.99506 1.18273 0.82573 0.88179 1.00340 1.46654 1.71171 1.05235 1.07708 1.19688 0.97224 0.97118 0.75834 1.21463 0.93079 1.48406 0.94378 0.90297 1.24860 0.94916 0.94594 0.98436 1.69893 1.13968 1.48930 1.20379 0.86958 0.81864 0.79246 0.82371 1.19874 1.20915 1.18996 1.17882 0.91837 0.87281 0.89780 1.20578 1.11294 0.99230 0.92217 1.20689 0.98062 0.92623 0.98402 1.20705 1.08397 0.97472 0.95164 1.20826 0.97743 0.97572 0.93515 1.20851 1.07054 0.91615 1.00866 0.93915 0.89391 0.93885 0.91242 0.91269 0.87625 0.88823 0.95413 0.95390 0.92485 0.86900 0.87201 0.87435 0.86900 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.46 10.66 -35.23 -0.38 -5.84 16 3 C 0.18 2.35 6.41 34.37 0.22 2.57 16 4 C -0.21 -3.47 13.73 -37.12 -0.51 -3.98 16 5 C -0.14 -2.50 13.68 -37.12 -0.51 -3.01 16 6 C 0.23 4.10 5.63 -6.83 -0.04 4.06 16 7 N -0.60 -12.76 2.55 -176.46 -0.45 -13.21 16 8 C 0.22 5.30 3.98 -5.19 -0.02 5.28 16 9 C -0.53 -14.69 9.94 -34.44 -0.34 -15.03 16 10 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 13 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 17 C 0.24 4.86 6.55 -83.78 -0.55 4.32 16 18 C -0.21 -3.80 9.20 -39.38 -0.36 -4.16 16 19 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 20 C -0.20 -3.19 10.04 -39.54 -0.40 -3.59 16 21 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 22 C -0.18 -3.72 9.21 -39.38 -0.36 -4.09 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.11 1.85 8.07 -51.93 -0.42 1.43 16 29 H 0.09 1.46 6.20 -51.93 -0.32 1.14 16 30 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 31 H 0.03 0.68 5.63 -51.93 -0.29 0.38 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.11 1.85 6.15 -52.49 -0.32 1.53 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.80 6.14 -52.48 -0.32 2.47 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -31.99 320.89 -7.56 -39.54 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.02 Total: 2.13 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.65 Total: -17.68 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.32 Total: -39.18 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.38 Total: -5.84 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.99 -7.56 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696491761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.144 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds