Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99718 * 2 1 4 4 C 1.47201 * 109.47216 * 180.02562 * 3 2 1 5 5 C 3.40056 * 161.18468 * 359.97438 * 2 1 3 6 6 C 4.78777 * 168.18127 * 359.97438 * 2 1 3 7 7 N 1.46500 * 109.47255 * 335.06788 * 6 5 4 8 8 C 1.46498 * 120.00184 * 270.00270 * 7 6 5 9 9 C 1.50705 * 109.46994 * 269.99731 * 8 7 6 10 10 H 1.07998 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37872 * 119.99774 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99944 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00460 * 0.02562 * 11 9 8 14 14 H 1.48491 * 109.47419 * 89.99441 * 13 11 9 15 15 H 1.48497 * 109.47134 * 209.99996 * 13 11 9 16 16 H 1.48503 * 109.46709 * 329.99763 * 13 11 9 17 17 C 1.39678 * 120.00138 * 89.99842 * 7 6 5 18 18 C 1.38915 * 120.06984 * 0.02562 * 17 7 6 19 19 C 1.38104 * 119.92359 * 179.97438 * 18 17 7 20 20 C 1.38288 * 120.07208 * 359.97438 * 19 18 17 21 21 C 1.38290 * 120.15288 * 0.02562 * 20 19 18 22 22 C 1.38100 * 120.07105 * 359.97438 * 21 20 19 23 23 H 1.08994 * 109.47808 * 60.00000 * 1 2 3 24 24 H 1.09005 * 109.46851 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47448 * 299.99429 * 1 2 3 26 26 H 1.09001 * 109.47247 * 60.00124 * 3 2 1 27 27 H 1.09006 * 109.46943 * 300.00401 * 3 2 1 28 28 H 1.08994 * 109.47130 * 215.07160 * 6 5 4 29 29 H 1.09004 * 109.47330 * 95.06748 * 6 5 4 30 30 H 1.08995 * 109.47144 * 29.99687 * 8 7 6 31 31 H 1.09000 * 109.47505 * 149.99538 * 8 7 6 32 32 H 0.97001 * 120.00260 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.03739 * 359.69591 * 18 17 7 34 34 H 1.08001 * 119.96576 * 179.97438 * 19 18 17 35 35 H 1.08007 * 119.92458 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.96313 * 180.02562 * 21 20 19 37 37 H 1.08007 * 120.03349 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.4776 1.1894 -0.0006 5 6 4.6478 1.0967 -0.0005 6 6 6.1152 0.9806 -0.0004 7 7 6.5033 -0.3065 0.5818 8 6 6.7394 -0.4169 2.0234 9 6 8.1896 -0.1324 2.3182 10 1 8.8675 0.1072 1.5123 11 6 8.6508 -0.1769 3.6167 12 7 9.9162 0.0719 3.8740 13 14 7.4782 -0.5906 5.0108 14 1 7.4656 -2.0596 5.2276 15 1 7.9261 0.0893 6.2526 16 1 6.1105 -0.1303 4.6601 17 6 6.6480 -1.4284 -0.2375 18 6 6.4249 -1.3253 -1.6047 19 6 6.5694 -2.4364 -2.4121 20 6 6.9363 -3.6505 -1.8609 21 6 7.1591 -3.7567 -0.5002 22 6 7.0164 -2.6495 0.3128 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6884 1.8464 -0.8900 28 1 6.5438 1.7904 0.5900 29 1 6.4847 1.0424 -1.0241 30 1 6.1134 0.3032 2.5503 31 1 6.4920 -1.4251 2.3560 32 1 10.2408 0.0403 4.7876 33 1 6.1345 -0.3784 -2.0352 34 1 6.3958 -2.3571 -3.4751 35 1 7.0490 -4.5179 -2.4946 36 1 7.4459 -4.7062 -0.0730 37 1 7.1902 -2.7332 1.3755 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696491761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = 26.787968 kcal Electronic energy + Delta-G solvation = -18387.166462 eV Core-core repulsion = 15516.703405 eV Total energy + Delta-G solvation = -2870.463058 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42113 -38.95321 -37.52577 -35.05646 -34.22227 -31.99175 -31.02534 -30.54471 -28.59981 -27.04099 -25.96875 -24.35911 -22.91618 -21.53047 -19.15415 -18.66941 -18.22437 -17.44740 -16.89023 -16.87614 -16.44710 -16.24101 -15.75247 -15.36974 -14.87746 -14.54200 -14.43982 -14.00954 -13.95900 -13.66356 -13.48872 -13.33141 -12.95453 -12.54854 -12.46148 -12.26771 -12.08414 -11.77794 -11.68403 -11.24435 -11.15669 -10.83686 -10.65711 -10.44738 -9.70841 -8.34496 -8.10090 -6.39145 0.65632 0.84769 1.22982 1.31923 1.33052 1.43019 1.61018 2.28521 2.56468 2.95549 2.99072 3.13590 3.50999 4.04502 4.16779 4.21260 4.28176 4.40761 4.44480 4.49933 4.58254 4.59922 4.65951 4.68271 4.73108 4.78591 4.85547 4.92150 5.00769 5.26000 5.42878 5.53581 5.71108 5.83624 6.07508 6.14893 6.19405 6.50072 6.55406 6.66879 6.77210 7.25831 8.82540 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.006894 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.802762 B = 4060.584137 C = 5490.311353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.179 3.821 4 C -0.199 4.199 5 C -0.181 4.181 6 C 0.232 3.768 7 N -0.616 5.616 8 C 0.236 3.764 9 C -0.533 4.533 10 H 0.035 0.965 11 C 0.019 3.981 12 N -0.941 5.941 13 Si 0.938 3.062 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.252 1.252 17 C 0.207 3.793 18 C -0.215 4.215 19 C -0.075 4.075 20 C -0.190 4.190 21 C -0.082 4.082 22 C -0.215 4.215 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.912 -0.698 -10.274 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C 0.104 3.896 4 C -0.201 4.201 5 C -0.183 4.183 6 C 0.109 3.891 7 N -0.323 5.323 8 C 0.114 3.886 9 C -0.572 4.572 10 H 0.053 0.947 11 C -0.179 4.179 12 N -0.581 5.581 13 Si 0.761 3.239 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.176 1.176 17 C 0.104 3.896 18 C -0.237 4.237 19 C -0.094 4.094 20 C -0.210 4.210 21 C -0.101 4.101 22 C -0.238 4.238 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.681 -0.686 -9.996 19.459 hybrid contribution 0.082 0.248 1.151 1.181 sum -16.598 -0.438 -8.845 18.813 Atomic orbital electron populations 1.23003 0.78184 1.04108 1.01713 1.87959 1.22497 1.27965 1.95804 1.19318 0.81664 0.85283 1.03338 1.22582 0.94008 1.01950 1.01568 1.23627 0.94986 0.98222 1.01425 1.18290 0.83292 0.86575 1.00953 1.46583 1.72281 1.06721 1.06695 1.19304 0.94486 0.96607 0.78207 1.21594 0.94460 1.47758 0.93353 0.94711 1.25724 0.96555 0.94381 1.01266 1.70037 1.16155 1.50646 1.21244 0.85860 0.79982 0.79342 0.78727 1.19029 1.20181 1.17559 1.18212 0.93295 0.87101 0.90985 1.20837 1.10934 1.00734 0.91240 1.21171 0.96293 0.91821 1.00099 1.21154 1.06342 0.98772 0.94722 1.21131 0.97111 0.97500 0.94311 1.20885 1.09503 0.93177 1.00218 0.91861 0.88800 0.92447 0.89130 0.88122 0.88388 0.87021 0.95458 0.95632 0.92231 0.85586 0.83450 0.83830 0.84820 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -11.14 10.66 -148.98 -1.59 -12.73 16 3 C 0.18 4.10 6.41 70.18 0.45 4.55 16 4 C -0.20 -6.39 13.73 31.13 0.43 -5.97 16 5 C -0.18 -6.37 13.68 31.13 0.43 -5.94 16 6 C 0.23 8.48 5.63 84.57 0.48 8.96 16 7 N -0.62 -26.96 2.55 -712.18 -1.81 -28.77 16 8 C 0.24 11.65 3.98 85.63 0.34 11.99 16 9 C -0.53 -30.69 9.94 25.60 0.25 -30.44 16 10 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 11 C 0.02 1.12 5.47 84.65 0.46 1.59 16 12 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 13 Si 0.94 43.78 27.47 68.60 1.88 45.67 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 17 C 0.21 8.65 6.55 38.21 0.25 8.90 16 18 C -0.21 -7.53 9.20 22.40 0.21 -7.32 16 19 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 20 C -0.19 -5.58 10.04 22.29 0.22 -5.36 16 21 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 22 C -0.22 -9.05 9.21 22.40 0.21 -8.84 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.70 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.10 3.61 8.07 -2.39 -0.02 3.59 16 29 H 0.11 3.53 6.20 -2.39 -0.01 3.52 16 30 H 0.03 1.34 7.13 -2.39 -0.02 1.32 16 31 H 0.03 1.28 5.63 -2.39 -0.01 1.26 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.13 3.97 6.15 -2.91 -0.02 3.95 16 34 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 37 H 0.10 4.73 6.14 -2.91 -0.02 4.71 16 Total: -1.00 -71.96 320.89 5.20 -66.76 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.00 Total: 17.95 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: 5.42 Total: -30.83 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -1.52 Total: -86.81 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.59 Total: -12.73 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -71.96 5.20 -66.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696491761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.544 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds