Wall clock time and date at job start Mon Mar 30 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47172 * 269.99752 * 3 2 1 5 5 H 1.48501 * 109.47123 * 29.99524 * 3 2 1 6 6 H 1.48502 * 109.47215 * 149.99367 * 3 2 1 7 7 C 1.37882 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47058 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47078 * 180.02562 * 12 11 10 14 14 C 1.47016 * 111.00239 * 66.04587 * 13 12 11 15 15 C 1.53096 * 109.25899 * 177.60610 * 14 13 12 16 16 O 1.43017 * 109.25564 * 56.85228 * 15 14 13 17 17 C 1.43013 * 113.74055 * 301.32719 * 16 15 14 18 18 H 1.09002 * 109.50377 * 298.73905 * 17 16 15 19 19 C 1.53002 * 109.51047 * 178.65317 * 17 16 15 20 20 C 1.52998 * 109.47106 * 64.99529 * 19 17 16 21 21 F 1.39903 * 109.47074 * 180.02562 * 20 19 17 22 22 C 1.47015 * 111.00069 * 302.41103 * 13 12 11 23 23 H 0.96997 * 119.99532 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47795 * 59.99501 * 9 7 2 25 25 H 1.09000 * 109.46994 * 299.99668 * 9 7 2 26 26 H 1.09002 * 109.47082 * 59.99988 * 10 9 7 27 27 H 1.09000 * 109.47075 * 299.99911 * 10 9 7 28 28 H 1.09001 * 109.47229 * 60.00420 * 11 10 9 29 29 H 1.09000 * 109.47677 * 299.99828 * 11 10 9 30 30 H 1.09002 * 109.47052 * 60.00502 * 12 11 10 31 31 H 1.09000 * 109.47374 * 300.00261 * 12 11 10 32 32 H 1.09004 * 109.50347 * 297.54426 * 14 13 12 33 33 H 1.08999 * 109.50027 * 57.67027 * 14 13 12 34 34 H 1.09003 * 109.50463 * 176.78181 * 15 14 13 35 35 H 1.08996 * 109.50939 * 296.91872 * 15 14 13 36 36 H 1.08991 * 109.46895 * 185.00012 * 19 17 16 37 37 H 1.09002 * 109.46559 * 305.00241 * 19 17 16 38 38 H 1.09001 * 109.47344 * 300.00485 * 20 19 17 39 39 H 1.09007 * 109.46486 * 60.00551 * 20 19 17 40 40 H 1.08996 * 109.50762 * 302.33252 * 22 13 12 41 41 H 1.09010 * 109.50807 * 62.45600 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 7 1.7401 -7.4222 0.0005 14 6 0.9936 -7.5997 -1.2535 15 6 0.2930 -8.9608 -1.2359 16 8 -0.5535 -9.0407 -0.0859 17 6 0.1409 -8.8729 1.1530 18 1 0.8831 -9.6635 1.2642 19 6 -0.8565 -8.9420 2.3112 20 6 -1.4664 -10.3436 2.3761 21 9 -2.3788 -10.4065 3.4348 22 6 0.8400 -7.5110 1.1596 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8534 -5.0451 -0.8886 29 1 0.8540 -5.0447 0.8914 30 1 3.1019 -6.0923 0.8901 31 1 3.1007 -6.0924 -0.8899 32 1 0.2498 -6.8086 -1.3493 33 1 1.6830 -7.5559 -2.0966 34 1 -0.3077 -9.0727 -2.1385 35 1 1.0396 -9.7539 -1.1941 36 1 -0.3416 -8.7260 3.2473 37 1 -1.6473 -8.2085 2.1537 38 1 -1.9812 -10.5596 1.4399 39 1 -0.6755 -11.0770 2.5335 40 1 1.4172 -7.4025 2.0778 41 1 0.0937 -6.7185 1.1024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700567551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:10 Heat of formation + Delta-G solvation = -121.456124 kcal Electronic energy + Delta-G solvation = -19580.791870 eV Core-core repulsion = 16408.964336 eV Total energy + Delta-G solvation = -3171.827534 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.76378 -39.97783 -36.75662 -34.10615 -33.88059 -32.11116 -29.80800 -28.96591 -26.64739 -24.27588 -24.09170 -22.51796 -21.50631 -20.42347 -19.65618 -17.04339 -16.61256 -16.25798 -16.02858 -15.63653 -15.54128 -15.07485 -14.77439 -14.55164 -14.42347 -14.10866 -13.72154 -12.86633 -12.58727 -12.53793 -12.13173 -11.89702 -11.74574 -11.65143 -11.51388 -11.17198 -10.97080 -10.94662 -10.71510 -10.55556 -10.44100 -10.41473 -9.77472 -9.66975 -9.43696 -9.09885 -8.35610 -8.22398 -6.00397 -4.03042 3.30922 3.37100 3.40506 3.49835 3.74577 4.30112 4.45148 4.55694 4.67292 4.83450 4.87959 4.95137 5.00924 5.10859 5.13923 5.34354 5.36315 5.40538 5.44679 5.45521 5.56195 5.70792 5.75224 5.77285 5.86114 5.93650 6.02777 6.21349 6.44093 6.67965 6.86729 6.91297 6.95205 7.00917 7.14163 7.66849 7.81461 7.99702 8.42589 9.04390 9.61103 11.10893 Molecular weight = 259.17amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.003393 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.907203 B = 8249.532329 C = 8822.075315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.155 4.155 12 C 0.054 3.946 13 N -0.537 5.537 14 C 0.011 3.989 15 C 0.067 3.933 16 O -0.384 6.384 17 C 0.097 3.903 18 H 0.068 0.932 19 C -0.146 4.146 20 C 0.065 3.935 21 F -0.221 7.221 22 C 0.018 3.982 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.013 0.987 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 -21.380 0.909 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.194 4.194 12 C -0.074 4.074 13 N -0.260 5.260 14 C -0.118 4.118 15 C -0.010 4.010 16 O -0.303 6.303 17 C 0.039 3.961 18 H 0.086 0.914 19 C -0.184 4.184 20 C 0.010 3.990 21 F -0.203 7.203 22 C -0.110 4.110 23 H 0.070 0.930 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.644 -21.693 0.959 21.724 hybrid contribution 0.115 1.845 -0.090 1.851 sum 0.759 -19.848 0.869 19.881 Atomic orbital electron populations 1.69972 1.06074 1.26571 1.50931 1.25045 0.94857 0.99291 0.95359 0.86597 0.79852 0.83476 0.78096 1.20671 1.21204 1.19868 1.21279 0.93020 0.91173 1.50463 0.92730 1.19090 0.94012 0.91509 0.96980 1.21543 0.98967 0.93716 1.00191 1.22283 0.99072 0.96435 1.01580 1.22322 0.96222 0.86052 1.02785 1.62532 1.26876 1.34762 1.01870 1.22828 0.97730 0.97883 0.93338 1.22652 0.93779 0.96056 0.88521 1.87960 1.35222 1.93164 1.13925 1.22033 0.93139 0.96756 0.84157 0.91389 1.22177 1.00116 0.97985 0.98156 1.21939 0.91095 0.97880 0.88064 1.92763 1.69745 1.97589 1.60158 1.22798 0.96052 0.97088 0.95049 0.93019 0.96875 0.96834 0.93414 0.93446 0.92493 0.92315 0.90631 0.90693 0.93043 0.89664 0.88471 0.92494 0.89143 0.89635 0.90003 0.90978 0.89636 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.17 5.15 -26.73 -0.14 -2.30 16 11 C -0.15 -2.59 4.50 -26.73 -0.12 -2.71 16 12 C 0.05 0.73 5.38 -3.82 -0.02 0.71 16 13 N -0.54 -6.61 4.94 -234.30 -1.16 -7.76 16 14 C 0.01 0.12 5.33 -3.71 -0.02 0.10 16 15 C 0.07 0.65 7.01 37.21 0.26 0.91 16 16 O -0.38 -4.34 10.01 -35.23 -0.35 -4.69 16 17 C 0.10 0.98 2.80 -26.68 -0.07 0.90 16 18 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -1.33 5.38 -26.73 -0.14 -1.48 16 20 C 0.07 0.56 7.45 37.16 0.28 0.84 16 21 F -0.22 -2.48 17.36 2.25 0.04 -2.44 16 22 C 0.02 0.22 4.41 -3.71 -0.02 0.20 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.98 6.60 -51.93 -0.34 0.64 16 29 H 0.06 1.01 6.42 -51.93 -0.33 0.67 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.05 0.68 6.59 -51.93 -0.34 0.34 16 33 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.69 7.82 -51.93 -0.41 0.29 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.74 6.41 -51.92 -0.33 0.41 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -31.25 327.24 -8.58 -39.83 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -7.21 Total: -3.92 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -0.55 Total: -16.19 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.42 Total: -34.36 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.35 Total: -4.69 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.25 -8.58 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700567551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.622 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds