Wall clock time and date at job start Mon Mar 30 2020 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00030 * 2 1 4 4 H 1.48500 * 109.47172 * 269.99752 * 3 2 1 5 5 H 1.48501 * 109.47123 * 29.99524 * 3 2 1 6 6 H 1.48502 * 109.47215 * 149.99367 * 3 2 1 7 7 C 1.37882 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00004 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47058 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47078 * 180.02562 * 12 11 10 14 14 C 1.47016 * 111.00239 * 66.04587 * 13 12 11 15 15 C 1.53096 * 109.25899 * 177.60610 * 14 13 12 16 16 O 1.43017 * 109.25564 * 56.85228 * 15 14 13 17 17 C 1.43013 * 113.74055 * 301.32719 * 16 15 14 18 18 H 1.09002 * 109.50377 * 298.73905 * 17 16 15 19 19 C 1.53002 * 109.51047 * 178.65317 * 17 16 15 20 20 C 1.52998 * 109.47106 * 64.99529 * 19 17 16 21 21 F 1.39903 * 109.47074 * 180.02562 * 20 19 17 22 22 C 1.47015 * 111.00069 * 302.41103 * 13 12 11 23 23 H 0.96997 * 119.99532 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47795 * 59.99501 * 9 7 2 25 25 H 1.09000 * 109.46994 * 299.99668 * 9 7 2 26 26 H 1.09002 * 109.47082 * 59.99988 * 10 9 7 27 27 H 1.09000 * 109.47075 * 299.99911 * 10 9 7 28 28 H 1.09001 * 109.47229 * 60.00420 * 11 10 9 29 29 H 1.09000 * 109.47677 * 299.99828 * 11 10 9 30 30 H 1.09002 * 109.47052 * 60.00502 * 12 11 10 31 31 H 1.09000 * 109.47374 * 300.00261 * 12 11 10 32 32 H 1.09004 * 109.50347 * 297.54426 * 14 13 12 33 33 H 1.08999 * 109.50027 * 57.67027 * 14 13 12 34 34 H 1.09003 * 109.50463 * 176.78181 * 15 14 13 35 35 H 1.08996 * 109.50939 * 296.91872 * 15 14 13 36 36 H 1.08991 * 109.46895 * 185.00012 * 19 17 16 37 37 H 1.09002 * 109.46559 * 305.00241 * 19 17 16 38 38 H 1.09001 * 109.47344 * 300.00485 * 20 19 17 39 39 H 1.09007 * 109.46486 * 60.00551 * 20 19 17 40 40 H 1.08996 * 109.50762 * 302.33252 * 22 13 12 41 41 H 1.09010 * 109.50807 * 62.45600 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0005 13 7 1.7401 -7.4222 0.0005 14 6 0.9936 -7.5997 -1.2535 15 6 0.2930 -8.9608 -1.2359 16 8 -0.5535 -9.0407 -0.0859 17 6 0.1409 -8.8729 1.1530 18 1 0.8831 -9.6635 1.2642 19 6 -0.8565 -8.9420 2.3112 20 6 -1.4664 -10.3436 2.3761 21 9 -2.3788 -10.4065 3.4348 22 6 0.8400 -7.5110 1.1596 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5572 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8895 28 1 0.8534 -5.0451 -0.8886 29 1 0.8540 -5.0447 0.8914 30 1 3.1019 -6.0923 0.8901 31 1 3.1007 -6.0924 -0.8899 32 1 0.2498 -6.8086 -1.3493 33 1 1.6830 -7.5559 -2.0966 34 1 -0.3077 -9.0727 -2.1385 35 1 1.0396 -9.7539 -1.1941 36 1 -0.3416 -8.7260 3.2473 37 1 -1.6473 -8.2085 2.1537 38 1 -1.9812 -10.5596 1.4399 39 1 -0.6755 -11.0770 2.5335 40 1 1.4172 -7.4025 2.0778 41 1 0.0937 -6.7185 1.1024 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700567551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:10 Heat of formation + Delta-G solvation = -141.332505 kcal Electronic energy + Delta-G solvation = -19581.653775 eV Core-core repulsion = 16408.964336 eV Total energy + Delta-G solvation = -3172.689439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 259.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.55566 -40.87850 -37.87346 -35.89599 -34.66782 -33.98315 -30.84460 -30.29109 -28.04992 -25.77919 -25.00250 -23.75239 -22.36584 -22.15971 -20.75329 -18.47352 -17.84244 -17.46773 -16.89565 -16.59937 -16.43886 -16.34250 -16.09673 -15.86735 -15.65391 -15.04672 -14.83548 -14.38549 -14.01076 -13.67931 -13.54957 -13.33828 -13.13611 -12.84724 -12.52151 -12.43136 -12.41039 -12.29134 -12.01576 -11.85552 -11.68097 -11.51264 -11.37780 -11.31953 -11.11041 -10.61789 -10.59360 -9.33645 -8.23205 -6.35563 1.37684 1.39477 1.50794 2.38380 2.70010 2.83048 3.09376 3.50742 3.83349 3.91669 3.95783 4.00104 4.08700 4.15372 4.19325 4.24319 4.33299 4.38843 4.44102 4.60269 4.65114 4.67835 4.74629 4.80159 4.88629 4.90965 4.98902 5.05428 5.09239 5.17885 5.23663 5.28683 5.49688 5.70159 5.81812 5.92290 5.95097 6.19246 6.21244 6.82143 7.34351 8.88565 Molecular weight = 259.17amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.003393 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.907203 B = 8249.532329 C = 8822.075315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.023 3.977 10 C -0.093 4.093 11 C -0.142 4.142 12 C 0.063 3.937 13 N -0.531 5.531 14 C 0.007 3.993 15 C 0.068 3.932 16 O -0.399 6.399 17 C 0.103 3.897 18 H 0.086 0.914 19 C -0.144 4.144 20 C 0.065 3.935 21 F -0.237 7.237 22 C 0.016 3.984 23 H 0.264 0.736 24 H -0.016 1.016 25 H -0.015 1.015 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 -22.321 0.851 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.181 4.181 12 C -0.065 4.065 13 N -0.254 5.254 14 C -0.121 4.121 15 C -0.009 4.009 16 O -0.319 6.319 17 C 0.045 3.955 18 H 0.104 0.896 19 C -0.182 4.182 20 C 0.010 3.990 21 F -0.218 7.218 22 C -0.113 4.113 23 H 0.072 0.928 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.446 -22.655 0.898 22.804 hybrid contribution -0.491 2.134 -0.088 2.191 sum 1.956 -20.521 0.811 20.630 Atomic orbital electron populations 1.70115 1.07959 1.27818 1.51712 1.26061 0.95803 1.03636 0.94647 0.85403 0.78679 0.78130 0.78582 1.19655 1.20726 1.18505 1.21743 0.93638 0.92407 1.50524 0.91968 1.19021 0.94511 0.93674 0.94180 1.21354 0.97819 0.93243 1.00755 1.22136 0.99296 0.96065 1.00649 1.22220 0.95417 0.85121 1.03725 1.62599 1.27059 1.33298 1.02430 1.22928 0.97501 0.98285 0.93400 1.22773 0.94173 0.95240 0.88702 1.87953 1.36189 1.93096 1.14642 1.22051 0.93420 0.96046 0.84012 0.89599 1.22154 0.99570 0.98017 0.98428 1.22055 0.91393 0.98006 0.87528 1.92731 1.70495 1.97638 1.60968 1.22872 0.95605 0.97483 0.95317 0.92769 0.99736 0.99688 0.92744 0.92756 0.93566 0.93292 0.89727 0.89700 0.95488 0.88353 0.86911 0.90893 0.87992 0.91490 0.89978 0.88464 0.88635 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16 11 C -0.14 -4.80 4.50 30.59 0.14 -4.66 16 12 C 0.06 1.62 5.38 86.30 0.46 2.08 16 13 N -0.53 -12.25 4.94 -895.19 -4.42 -16.67 16 14 C 0.01 0.15 5.33 86.31 0.46 0.61 16 15 C 0.07 1.19 7.01 72.01 0.50 1.70 16 16 O -0.40 -8.50 10.01 -148.98 -1.49 -9.99 16 17 C 0.10 1.90 2.80 30.63 0.09 1.99 16 18 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 19 C -0.14 -2.48 5.38 30.59 0.16 -2.32 16 20 C 0.06 1.02 7.45 71.98 0.54 1.55 16 21 F -0.24 -5.11 17.36 44.97 0.78 -4.33 16 22 C 0.02 0.35 4.41 86.31 0.38 0.73 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 25 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.05 1.64 6.60 -2.39 -0.02 1.63 16 29 H 0.05 1.73 6.42 -2.39 -0.02 1.72 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16 32 H 0.03 0.72 6.59 -2.39 -0.02 0.70 16 33 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 0.81 6.41 -2.38 -0.02 0.79 16 Total: -1.00 -67.90 327.24 1.89 -66.01 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.98 Total: 8.06 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.74 Total: -31.83 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -4.13 Total: -74.69 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.49 Total: -9.99 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -67.90 1.89 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700567551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.324 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds