Wall clock time and date at job start Mon Mar 30 2020 07:22:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86794 * 120.00030 * 2 1
4 4 H 1.48500 * 109.47172 * 269.99752 * 3 2 1
5 5 H 1.48501 * 109.47123 * 29.99524 * 3 2 1
6 6 H 1.48502 * 109.47215 * 149.99367 * 3 2 1
7 7 C 1.37882 * 119.99885 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00004 * 180.02562 * 7 2 1
9 9 C 1.50696 * 120.00032 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.47280 * 179.97438 * 9 7 2
11 11 C 1.52994 * 109.47326 * 179.97438 * 10 9 7
12 12 C 1.53005 * 109.47058 * 179.97438 * 11 10 9
13 13 N 1.46900 * 109.47078 * 180.02562 * 12 11 10
14 14 C 1.47016 * 111.00239 * 66.04587 * 13 12 11
15 15 C 1.53096 * 109.25899 * 177.60610 * 14 13 12
16 16 O 1.43017 * 109.25564 * 56.85228 * 15 14 13
17 17 C 1.43013 * 113.74055 * 301.32719 * 16 15 14
18 18 H 1.09002 * 109.50377 * 298.73905 * 17 16 15
19 19 C 1.53002 * 109.51047 * 178.65317 * 17 16 15
20 20 C 1.52998 * 109.47106 * 64.99529 * 19 17 16
21 21 F 1.39903 * 109.47074 * 180.02562 * 20 19 17
22 22 C 1.47015 * 111.00069 * 302.41103 * 13 12 11
23 23 H 0.96997 * 119.99532 * 0.02562 * 1 2 3
24 24 H 1.09002 * 109.47795 * 59.99501 * 9 7 2
25 25 H 1.09000 * 109.46994 * 299.99668 * 9 7 2
26 26 H 1.09002 * 109.47082 * 59.99988 * 10 9 7
27 27 H 1.09000 * 109.47075 * 299.99911 * 10 9 7
28 28 H 1.09001 * 109.47229 * 60.00420 * 11 10 9
29 29 H 1.09000 * 109.47677 * 299.99828 * 11 10 9
30 30 H 1.09002 * 109.47052 * 60.00502 * 12 11 10
31 31 H 1.09000 * 109.47374 * 300.00261 * 12 11 10
32 32 H 1.09004 * 109.50347 * 297.54426 * 14 13 12
33 33 H 1.08999 * 109.50027 * 57.67027 * 14 13 12
34 34 H 1.09003 * 109.50463 * 176.78181 * 15 14 13
35 35 H 1.08996 * 109.50939 * 296.91872 * 15 14 13
36 36 H 1.08991 * 109.46895 * 185.00012 * 19 17 16
37 37 H 1.09002 * 109.46559 * 305.00241 * 19 17 16
38 38 H 1.09001 * 109.47344 * 300.00485 * 20 19 17
39 39 H 1.09007 * 109.46486 * 60.00551 * 20 19 17
40 40 H 1.08996 * 109.50762 * 302.33252 * 22 13 12
41 41 H 1.09010 * 109.50807 * 62.45600 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4968 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5467 1.4402 0.7002
7 6 2.0046 -1.1941 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2511 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 6 1.4803 -4.9871 0.0012
12 6 2.4746 -6.1500 0.0005
13 7 1.7401 -7.4222 0.0005
14 6 0.9936 -7.5997 -1.2535
15 6 0.2930 -8.9608 -1.2359
16 8 -0.5535 -9.0407 -0.0859
17 6 0.1409 -8.8729 1.1530
18 1 0.8831 -9.6635 1.2642
19 6 -0.8565 -8.9420 2.3112
20 6 -1.4664 -10.3436 2.3761
21 9 -2.3788 -10.4065 3.4348
22 6 0.8400 -7.5110 1.1596
23 1 -0.4849 0.8401 -0.0004
24 1 0.6247 -2.5572 -0.8896
25 1 0.6242 -2.5567 0.8903
26 1 2.8720 -3.6044 0.8905
27 1 2.8719 -3.6044 -0.8895
28 1 0.8534 -5.0451 -0.8886
29 1 0.8540 -5.0447 0.8914
30 1 3.1019 -6.0923 0.8901
31 1 3.1007 -6.0924 -0.8899
32 1 0.2498 -6.8086 -1.3493
33 1 1.6830 -7.5559 -2.0966
34 1 -0.3077 -9.0727 -2.1385
35 1 1.0396 -9.7539 -1.1941
36 1 -0.3416 -8.7260 3.2473
37 1 -1.6473 -8.2085 2.1537
38 1 -1.9812 -10.5596 1.4399
39 1 -0.6755 -11.0770 2.5335
40 1 1.4172 -7.4025 2.0778
41 1 0.0937 -6.7185 1.1024
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700567551.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:22:10
Heat of formation + Delta-G solvation = -141.332505 kcal
Electronic energy + Delta-G solvation = -19581.653775 eV
Core-core repulsion = 16408.964336 eV
Total energy + Delta-G solvation = -3172.689439 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 259.169 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-48.55566 -40.87850 -37.87346 -35.89599 -34.66782 -33.98315 -30.84460 -30.29109
-28.04992 -25.77919 -25.00250 -23.75239 -22.36584 -22.15971 -20.75329 -18.47352
-17.84244 -17.46773 -16.89565 -16.59937 -16.43886 -16.34250 -16.09673 -15.86735
-15.65391 -15.04672 -14.83548 -14.38549 -14.01076 -13.67931 -13.54957 -13.33828
-13.13611 -12.84724 -12.52151 -12.43136 -12.41039 -12.29134 -12.01576 -11.85552
-11.68097 -11.51264 -11.37780 -11.31953 -11.11041 -10.61789 -10.59360 -9.33645
-8.23205 -6.35563 1.37684 1.39477 1.50794 2.38380 2.70010 2.83048
3.09376 3.50742 3.83349 3.91669 3.95783 4.00104 4.08700 4.15372
4.19325 4.24319 4.33299 4.38843 4.44102 4.60269 4.65114 4.67835
4.74629 4.80159 4.88629 4.90965 4.98902 5.05428 5.09239 5.17885
5.23663 5.28683 5.49688 5.70159 5.81812 5.92290 5.95097 6.19246
6.21244 6.82143 7.34351 8.88565
Molecular weight = 259.17amu
Principal moments of inertia in cm(-1)
A = 0.027474 B = 0.003393 C = 0.003173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1018.907203 B = 8249.532329 C = 8822.075315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.004 4.004
3 Si 0.968 3.032
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.261 1.261
7 C -0.545 4.545
8 H 0.062 0.938
9 C 0.023 3.977
10 C -0.093 4.093
11 C -0.142 4.142
12 C 0.063 3.937
13 N -0.531 5.531
14 C 0.007 3.993
15 C 0.068 3.932
16 O -0.399 6.399
17 C 0.103 3.897
18 H 0.086 0.914
19 C -0.144 4.144
20 C 0.065 3.935
21 F -0.237 7.237
22 C 0.016 3.984
23 H 0.264 0.736
24 H -0.016 1.016
25 H -0.015 1.015
26 H 0.054 0.946
27 H 0.054 0.946
28 H 0.046 0.954
29 H 0.048 0.952
30 H 0.084 0.916
31 H 0.085 0.915
32 H 0.027 0.973
33 H 0.098 0.902
34 H 0.113 0.887
35 H 0.073 0.927
36 H 0.102 0.898
37 H 0.066 0.934
38 H 0.082 0.918
39 H 0.097 0.903
40 H 0.095 0.905
41 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.457 -22.321 0.851 22.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.201 4.201
3 Si 0.792 3.208
4 H -0.197 1.197
5 H -0.207 1.207
6 H -0.185 1.185
7 C -0.583 4.583
8 H 0.080 0.920
9 C -0.014 4.014
10 C -0.132 4.132
11 C -0.181 4.181
12 C -0.065 4.065
13 N -0.254 5.254
14 C -0.121 4.121
15 C -0.009 4.009
16 O -0.319 6.319
17 C 0.045 3.955
18 H 0.104 0.896
19 C -0.182 4.182
20 C 0.010 3.990
21 F -0.218 7.218
22 C -0.113 4.113
23 H 0.072 0.928
24 H 0.003 0.997
25 H 0.003 0.997
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.064 0.936
29 H 0.067 0.933
30 H 0.103 0.897
31 H 0.103 0.897
32 H 0.045 0.955
33 H 0.116 0.884
34 H 0.131 0.869
35 H 0.091 0.909
36 H 0.120 0.880
37 H 0.085 0.915
38 H 0.100 0.900
39 H 0.115 0.885
40 H 0.114 0.886
41 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 2.446 -22.655 0.898 22.804
hybrid contribution -0.491 2.134 -0.088 2.191
sum 1.956 -20.521 0.811 20.630
Atomic orbital electron populations
1.70115 1.07959 1.27818 1.51712 1.26061 0.95803 1.03636 0.94647
0.85403 0.78679 0.78130 0.78582 1.19655 1.20726 1.18505 1.21743
0.93638 0.92407 1.50524 0.91968 1.19021 0.94511 0.93674 0.94180
1.21354 0.97819 0.93243 1.00755 1.22136 0.99296 0.96065 1.00649
1.22220 0.95417 0.85121 1.03725 1.62599 1.27059 1.33298 1.02430
1.22928 0.97501 0.98285 0.93400 1.22773 0.94173 0.95240 0.88702
1.87953 1.36189 1.93096 1.14642 1.22051 0.93420 0.96046 0.84012
0.89599 1.22154 0.99570 0.98017 0.98428 1.22055 0.91393 0.98006
0.87528 1.92731 1.70495 1.97638 1.60968 1.22872 0.95605 0.97483
0.95317 0.92769 0.99736 0.99688 0.92744 0.92756 0.93566 0.93292
0.89727 0.89700 0.95488 0.88353 0.86911 0.90893 0.87992 0.91490
0.89978 0.88464 0.88635 0.95263
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -58.31 13.29 21.45 0.28 -58.02 16
2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16
3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16
4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16
5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16
7 C -0.55 -31.71 9.11 25.60 0.23 -31.48 16
8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16
9 C 0.02 1.27 4.97 29.85 0.15 1.41 16
10 C -0.09 -3.84 5.15 30.59 0.16 -3.68 16
11 C -0.14 -4.80 4.50 30.59 0.14 -4.66 16
12 C 0.06 1.62 5.38 86.30 0.46 2.08 16
13 N -0.53 -12.25 4.94 -895.19 -4.42 -16.67 16
14 C 0.01 0.15 5.33 86.31 0.46 0.61 16
15 C 0.07 1.19 7.01 72.01 0.50 1.70 16
16 O -0.40 -8.50 10.01 -148.98 -1.49 -9.99 16
17 C 0.10 1.90 2.80 30.63 0.09 1.99 16
18 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16
19 C -0.14 -2.48 5.38 30.59 0.16 -2.32 16
20 C 0.06 1.02 7.45 71.98 0.54 1.55 16
21 F -0.24 -5.11 17.36 44.97 0.78 -4.33 16
22 C 0.02 0.35 4.41 86.31 0.38 0.73 16
23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16
24 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16
25 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16
26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16
28 H 0.05 1.64 6.60 -2.39 -0.02 1.63 16
29 H 0.05 1.73 6.42 -2.39 -0.02 1.72 16
30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
31 H 0.08 2.04 8.11 -2.39 -0.02 2.02 16
32 H 0.03 0.72 6.59 -2.39 -0.02 0.70 16
33 H 0.10 1.86 8.12 -2.39 -0.02 1.84 16
34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
38 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16
39 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16
40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16
41 H 0.03 0.81 6.41 -2.38 -0.02 0.79 16
Total: -1.00 -67.90 327.24 1.89 -66.01
By element:
Atomic # 1 Polarization: 7.08 SS G_CDS: 0.98 Total: 8.06 kcal
Atomic # 6 Polarization: -35.56 SS G_CDS: 3.74 Total: -31.83 kcal
Atomic # 7 Polarization: -70.56 SS G_CDS: -4.13 Total: -74.69 kcal
Atomic # 8 Polarization: -8.50 SS G_CDS: -1.49 Total: -9.99 kcal
Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -67.90 1.89 -66.01 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700567551.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.324 kcal
(2) G-P(sol) polarization free energy of solvation -67.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds