Wall clock time and date at job start Mon Mar 30 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00014 * 2 1 4 4 C 1.52997 * 109.47381 * 72.81029 * 3 2 1 5 5 C 1.50697 * 115.54926 * 55.46194 * 4 3 2 6 6 H 1.08003 * 120.00019 * 205.72253 * 5 4 3 7 7 C 1.37878 * 120.00205 * 25.71125 * 5 4 3 8 8 N 1.31508 * 120.00332 * 217.24980 * 7 5 4 9 9 Si 1.86798 * 119.99825 * 37.25185 * 7 5 4 10 10 H 1.48499 * 109.46989 * 269.11825 * 9 7 5 11 11 H 1.48497 * 109.47171 * 149.11983 * 9 7 5 12 12 H 1.48499 * 109.47194 * 29.11454 * 9 7 5 13 13 C 1.53008 * 117.49819 * 201.12661 * 4 3 2 14 14 C 1.52997 * 117.50144 * 269.78730 * 4 3 2 15 15 C 1.46894 * 111.00095 * 236.04491 * 2 1 3 16 16 C 1.53004 * 109.47172 * 287.75226 * 15 2 1 17 17 C 1.52996 * 115.55061 * 301.54473 * 16 15 2 18 18 C 1.52999 * 117.49963 * 155.86803 * 16 15 2 19 19 C 1.53000 * 117.49463 * 87.20905 * 16 15 2 20 20 F 1.39902 * 117.49911 * 214.97944 * 19 16 15 21 21 F 1.39901 * 117.49810 * 0.02562 * 19 16 15 22 22 H 1.08997 * 109.47198 * 64.69566 * 1 2 3 23 23 H 1.09002 * 109.46948 * 184.69699 * 1 2 3 24 24 H 1.09001 * 109.46701 * 304.69796 * 1 2 3 25 25 H 1.09008 * 109.46850 * 312.80888 * 3 2 1 26 26 H 1.09004 * 109.47363 * 192.81615 * 3 2 1 27 27 H 0.97000 * 120.00610 * 179.97438 * 8 7 5 28 28 H 1.09001 * 117.49260 * 215.00397 * 13 4 3 29 29 H 1.08994 * 117.49976 * 0.02820 * 13 4 3 30 30 H 1.09007 * 117.49840 * 359.97438 * 14 4 3 31 31 H 1.08996 * 117.49912 * 144.99735 * 14 4 3 32 32 H 1.08996 * 109.47257 * 47.75700 * 15 2 1 33 33 H 1.09009 * 109.47272 * 167.75777 * 15 2 1 34 34 H 1.08994 * 109.47334 * 57.21358 * 17 16 15 35 35 H 1.08999 * 109.47130 * 177.21159 * 17 16 15 36 36 H 1.09003 * 109.47376 * 297.21160 * 17 16 15 37 37 H 1.09001 * 117.49583 * 0.02562 * 18 16 15 38 38 H 1.08996 * 117.49943 * 145.00006 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7803 2.0004 1.3780 5 6 2.3564 1.2329 2.5399 6 1 1.9285 1.3432 3.5254 7 6 3.4296 0.3896 2.3449 8 7 3.5016 -0.7464 3.0035 9 14 4.7816 0.8607 1.1450 10 1 4.4575 0.3245 -0.2013 11 1 6.0733 0.2920 1.6066 12 1 4.8886 2.3403 1.0759 13 6 1.7888 3.5279 1.4665 14 6 0.4727 2.7597 1.6117 15 6 1.9954 -0.7660 -1.1375 16 6 1.7676 -2.2595 -0.8959 17 6 2.4028 -2.8268 0.3752 18 6 1.7051 -3.1721 -2.1223 19 6 0.4286 -2.8509 -1.3410 20 9 -0.1211 -3.8693 -0.5549 21 9 -0.4935 -1.9847 -1.9382 22 1 -0.3633 0.4392 -0.9290 23 1 -0.3633 -1.0242 0.0842 24 1 -0.3633 0.5850 0.8449 25 1 1.4736 1.9609 -0.7540 26 1 3.0612 1.3516 -0.2280 27 1 4.2564 -1.3399 2.8661 28 1 2.2111 3.9775 2.3652 29 1 1.9472 4.0846 0.5430 30 1 -0.2341 2.8115 0.7834 31 1 0.0291 2.7040 2.6057 32 1 1.4807 -0.4627 -2.0492 33 1 3.0633 -0.5736 -1.2421 34 1 2.0354 -2.2768 1.2416 35 1 2.1388 -3.8796 0.4746 36 1 3.4866 -2.7281 0.3150 37 1 1.8267 -2.7085 -3.1013 38 1 2.1165 -4.1766 -2.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701766249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:15 Heat of formation + Delta-G solvation = -21.473683 kcal Electronic energy + Delta-G solvation = -21179.849487 eV Core-core repulsion = 17888.897212 eV Total energy + Delta-G solvation = -3290.952275 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.43749 -47.09085 -38.37659 -36.84802 -34.35632 -32.14083 -28.30976 -27.30733 -26.75108 -25.16315 -22.40241 -21.92815 -21.26548 -19.24099 -18.86830 -17.40791 -16.38224 -16.02553 -15.78816 -15.38468 -14.66849 -14.07397 -14.04273 -13.74485 -13.51203 -13.32205 -13.09834 -12.91497 -12.75081 -12.39857 -11.98299 -11.88475 -11.60148 -11.37886 -11.11312 -10.97226 -10.80481 -10.45868 -10.25650 -10.15278 -9.96101 -9.46897 -9.36925 -9.07916 -8.58303 -7.95328 -7.40843 -6.16036 -3.78799 3.21326 3.22636 3.36550 3.43086 3.51028 4.21321 4.51860 4.52506 4.77610 4.85346 5.01217 5.18930 5.48170 5.49982 5.63019 5.83503 5.85705 5.90117 5.97246 6.06196 6.13921 6.21300 6.30138 6.34487 6.36384 6.40888 6.59249 6.64755 6.80751 6.83967 7.08158 7.12124 7.25604 7.78323 7.83371 7.99821 8.63317 9.05763 9.68169 10.96331 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.008978 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.252919 B = 3117.865132 C = 3683.426344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.496 5.496 3 C 0.088 3.912 4 C 0.039 3.961 5 C -0.499 4.499 6 H 0.069 0.931 7 C 0.128 3.872 8 N -0.841 5.841 9 Si 0.840 3.160 10 H -0.273 1.273 11 H -0.299 1.299 12 H -0.270 1.270 13 C -0.223 4.223 14 C -0.199 4.199 15 C 0.080 3.920 16 C -0.091 4.091 17 C -0.113 4.113 18 C -0.180 4.180 19 C 0.190 3.810 20 F -0.162 7.162 21 F -0.164 7.164 22 H 0.010 0.990 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.014 0.986 26 H 0.066 0.934 27 H 0.261 0.739 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.537 -3.650 -10.159 11.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.218 5.218 3 C -0.039 4.039 4 C 0.038 3.962 5 C -0.534 4.534 6 H 0.087 0.913 7 C -0.080 4.080 8 N -0.473 5.473 9 Si 0.669 3.331 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.195 1.195 13 C -0.262 4.262 14 C -0.236 4.236 15 C -0.048 4.048 16 C -0.093 4.093 17 C -0.170 4.170 18 C -0.219 4.219 19 C 0.153 3.847 20 F -0.143 7.143 21 F -0.144 7.144 22 H 0.028 0.972 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.338 -4.079 -9.636 10.722 hybrid contribution 0.217 0.638 -1.519 1.662 sum -2.121 -3.441 -11.155 11.865 Atomic orbital electron populations 1.22440 0.87740 1.01467 0.99839 1.61589 1.07186 1.13588 1.39487 1.21819 0.98649 0.87324 0.96094 1.19140 0.95517 0.87971 0.93593 1.19842 1.15734 1.24665 0.93115 0.91349 1.24522 0.97610 0.92436 0.93466 1.70297 1.28564 1.06162 1.42267 0.87756 0.82720 0.80194 0.82447 1.20082 1.22638 1.19479 1.23201 1.02779 0.99624 1.00551 1.22843 0.91027 1.09323 1.00455 1.21722 1.01187 0.89536 0.92363 1.22913 0.93428 0.96046 0.96925 1.21315 1.00335 0.99516 0.95859 1.24515 0.95960 1.02991 0.98384 1.20260 0.81364 0.86123 0.96913 1.92989 1.87566 1.58967 1.74743 1.92981 1.68962 1.68945 1.83539 0.97203 0.92560 0.90255 0.96798 0.91606 0.92953 0.89971 0.92027 0.91595 0.90287 0.95033 0.89502 0.87367 0.93229 0.91737 0.86687 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.14 60.06 0.49 1.13 16 2 N -0.50 -10.15 3.64 -242.91 -0.88 -11.03 16 3 C 0.09 1.88 3.89 -3.83 -0.01 1.86 16 4 C 0.04 0.91 1.24 -155.66 -0.19 0.72 16 5 C -0.50 -13.42 9.14 -34.44 -0.31 -13.74 16 6 H 0.07 2.03 8.06 -52.48 -0.42 1.60 16 7 C 0.13 3.39 4.79 -17.82 -0.09 3.30 16 8 N -0.84 -23.02 13.96 55.43 0.77 -22.25 16 9 Si 0.84 20.05 25.37 -169.99 -4.31 15.74 16 10 H -0.27 -6.07 4.77 56.52 0.27 -5.80 16 11 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.22 -4.75 9.96 -26.69 -0.27 -5.02 16 14 C -0.20 -4.15 8.35 -26.69 -0.22 -4.38 16 15 C 0.08 1.42 4.70 -3.82 -0.02 1.40 16 16 C -0.09 -1.48 1.98 -154.51 -0.31 -1.79 16 17 C -0.11 -2.00 9.38 37.16 0.35 -1.65 16 18 C -0.18 -2.27 9.94 -26.69 -0.27 -2.53 16 19 C 0.19 2.98 3.94 -26.69 -0.11 2.88 16 20 F -0.16 -2.70 16.82 2.25 0.04 -2.67 16 21 F -0.16 -2.68 14.95 2.25 0.03 -2.64 16 22 H 0.01 0.17 8.08 -51.93 -0.42 -0.25 16 23 H 0.06 1.07 5.65 -51.93 -0.29 0.78 16 24 H 0.08 1.60 5.95 -51.93 -0.31 1.29 16 25 H 0.01 0.28 8.00 -51.92 -0.42 -0.14 16 26 H 0.07 1.45 3.16 -51.93 -0.16 1.29 16 27 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.26 7.96 -51.92 -0.41 0.84 16 31 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.03 0.52 7.56 -51.93 -0.39 0.12 16 33 H 0.09 1.58 6.16 -51.92 -0.32 1.26 16 34 H 0.11 2.34 7.91 -51.93 -0.41 1.93 16 35 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -27.14 302.47 -6.51 -33.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.76 Total: 2.46 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.95 Total: -17.82 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.11 Total: -33.28 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.31 Total: 15.74 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.14 -6.51 -33.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701766249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.172 kcal (2) G-P(sol) polarization free energy of solvation -27.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds