Wall clock time and date at job start Mon Mar 30 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00014 * 2 1 4 4 C 1.52997 * 109.47381 * 72.81029 * 3 2 1 5 5 C 1.50697 * 115.54926 * 55.46194 * 4 3 2 6 6 H 1.08003 * 120.00019 * 205.72253 * 5 4 3 7 7 C 1.37878 * 120.00205 * 25.71125 * 5 4 3 8 8 N 1.31508 * 120.00332 * 217.24980 * 7 5 4 9 9 Si 1.86798 * 119.99825 * 37.25185 * 7 5 4 10 10 H 1.48499 * 109.46989 * 269.11825 * 9 7 5 11 11 H 1.48497 * 109.47171 * 149.11983 * 9 7 5 12 12 H 1.48499 * 109.47194 * 29.11454 * 9 7 5 13 13 C 1.53008 * 117.49819 * 201.12661 * 4 3 2 14 14 C 1.52997 * 117.50144 * 269.78730 * 4 3 2 15 15 C 1.46894 * 111.00095 * 236.04491 * 2 1 3 16 16 C 1.53004 * 109.47172 * 287.75226 * 15 2 1 17 17 C 1.52996 * 115.55061 * 301.54473 * 16 15 2 18 18 C 1.52999 * 117.49963 * 155.86803 * 16 15 2 19 19 C 1.53000 * 117.49463 * 87.20905 * 16 15 2 20 20 F 1.39902 * 117.49911 * 214.97944 * 19 16 15 21 21 F 1.39901 * 117.49810 * 0.02562 * 19 16 15 22 22 H 1.08997 * 109.47198 * 64.69566 * 1 2 3 23 23 H 1.09002 * 109.46948 * 184.69699 * 1 2 3 24 24 H 1.09001 * 109.46701 * 304.69796 * 1 2 3 25 25 H 1.09008 * 109.46850 * 312.80888 * 3 2 1 26 26 H 1.09004 * 109.47363 * 192.81615 * 3 2 1 27 27 H 0.97000 * 120.00610 * 179.97438 * 8 7 5 28 28 H 1.09001 * 117.49260 * 215.00397 * 13 4 3 29 29 H 1.08994 * 117.49976 * 0.02820 * 13 4 3 30 30 H 1.09007 * 117.49840 * 359.97438 * 14 4 3 31 31 H 1.08996 * 117.49912 * 144.99735 * 14 4 3 32 32 H 1.08996 * 109.47257 * 47.75700 * 15 2 1 33 33 H 1.09009 * 109.47272 * 167.75777 * 15 2 1 34 34 H 1.08994 * 109.47334 * 57.21358 * 17 16 15 35 35 H 1.08999 * 109.47130 * 177.21159 * 17 16 15 36 36 H 1.09003 * 109.47376 * 297.21160 * 17 16 15 37 37 H 1.09001 * 117.49583 * 0.02562 * 18 16 15 38 38 H 1.08996 * 117.49943 * 145.00006 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7803 2.0004 1.3780 5 6 2.3564 1.2329 2.5399 6 1 1.9285 1.3432 3.5254 7 6 3.4296 0.3896 2.3449 8 7 3.5016 -0.7464 3.0035 9 14 4.7816 0.8607 1.1450 10 1 4.4575 0.3245 -0.2013 11 1 6.0733 0.2920 1.6066 12 1 4.8886 2.3403 1.0759 13 6 1.7888 3.5279 1.4665 14 6 0.4727 2.7597 1.6117 15 6 1.9954 -0.7660 -1.1375 16 6 1.7676 -2.2595 -0.8959 17 6 2.4028 -2.8268 0.3752 18 6 1.7051 -3.1721 -2.1223 19 6 0.4286 -2.8509 -1.3410 20 9 -0.1211 -3.8693 -0.5549 21 9 -0.4935 -1.9847 -1.9382 22 1 -0.3633 0.4392 -0.9290 23 1 -0.3633 -1.0242 0.0842 24 1 -0.3633 0.5850 0.8449 25 1 1.4736 1.9609 -0.7540 26 1 3.0612 1.3516 -0.2280 27 1 4.2564 -1.3399 2.8661 28 1 2.2111 3.9775 2.3652 29 1 1.9472 4.0846 0.5430 30 1 -0.2341 2.8115 0.7834 31 1 0.0291 2.7040 2.6057 32 1 1.4807 -0.4627 -2.0492 33 1 3.0633 -0.5736 -1.2421 34 1 2.0354 -2.2768 1.2416 35 1 2.1388 -3.8796 0.4746 36 1 3.4866 -2.7281 0.3150 37 1 1.8267 -2.7085 -3.1013 38 1 2.1165 -4.1766 -2.0236 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701766249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:15 Heat of formation + Delta-G solvation = -36.734371 kcal Electronic energy + Delta-G solvation = -21180.511240 eV Core-core repulsion = 17888.897212 eV Total energy + Delta-G solvation = -3291.614028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.64784 -48.31518 -39.85610 -38.31921 -35.86195 -34.17447 -29.61866 -28.96097 -28.18612 -27.08371 -23.51083 -23.45024 -22.95871 -20.79128 -20.43299 -18.63629 -18.14421 -17.41016 -17.15008 -17.00651 -16.18103 -15.72209 -15.61468 -15.01395 -15.00745 -14.69140 -14.60185 -14.33573 -14.18457 -13.87753 -13.64236 -13.33285 -13.12786 -12.80808 -12.70353 -12.60327 -12.33239 -12.17490 -12.01976 -11.80204 -11.52677 -11.26974 -10.86915 -10.55507 -10.32802 -9.94056 -8.90675 -8.20752 -5.86688 1.33568 1.49275 1.58381 2.09451 2.17924 2.52871 2.85029 3.04684 3.38441 3.53107 3.67427 3.70255 3.91147 4.16935 4.27941 4.38778 4.47823 4.55569 4.58692 4.61812 4.64236 4.75589 4.83077 4.88912 4.93202 4.98805 5.00072 5.01299 5.13816 5.20425 5.35251 5.56733 5.62478 5.92987 6.32287 6.37587 6.57657 6.95970 7.61347 8.95494 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.008978 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.252919 B = 3117.865132 C = 3683.426344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.521 5.521 3 C 0.093 3.907 4 C 0.016 3.984 5 C -0.519 4.519 6 H 0.019 0.981 7 C 0.098 3.902 8 N -0.876 5.876 9 Si 0.892 3.108 10 H -0.244 1.244 11 H -0.305 1.305 12 H -0.271 1.271 13 C -0.213 4.213 14 C -0.186 4.186 15 C 0.082 3.918 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.134 4.134 19 C 0.172 3.828 20 F -0.174 7.174 21 F -0.169 7.169 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.144 0.856 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -3.644 -13.429 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.244 5.244 3 C -0.034 4.034 4 C 0.014 3.986 5 C -0.554 4.554 6 H 0.037 0.963 7 C -0.108 4.108 8 N -0.509 5.509 9 Si 0.719 3.281 10 H -0.169 1.169 11 H -0.234 1.234 12 H -0.196 1.196 13 C -0.251 4.251 14 C -0.223 4.223 15 C -0.046 4.046 16 C -0.117 4.117 17 C -0.161 4.161 18 C -0.172 4.172 19 C 0.135 3.865 20 F -0.154 7.154 21 F -0.150 7.150 22 H 0.045 0.955 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.162 0.838 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.003 -4.067 -12.922 13.694 hybrid contribution 0.042 0.625 -0.376 0.731 sum -1.961 -3.442 -13.298 13.875 Atomic orbital electron populations 1.22285 0.87371 1.00918 0.99842 1.61495 1.07727 1.13502 1.41683 1.21701 0.98543 0.88105 0.95024 1.19131 0.97055 0.88806 0.93599 1.19884 1.16564 1.26298 0.92611 0.96257 1.25000 0.98762 0.91886 0.95200 1.70364 1.29191 1.07108 1.44286 0.86898 0.79525 0.79588 0.82080 1.16938 1.23352 1.19646 1.23195 1.02342 0.98210 1.01372 1.22814 0.90964 1.07867 1.00662 1.21735 1.00856 0.89979 0.92031 1.22838 0.94517 0.96018 0.98298 1.21109 1.00082 0.99715 0.95226 1.24665 0.91559 1.03244 0.97707 1.20561 0.81529 0.86245 0.98131 1.92964 1.87794 1.59277 1.75390 1.92962 1.69279 1.69276 1.83485 0.95450 0.93115 0.92066 0.94616 0.92249 0.92750 0.91020 0.89280 0.89109 0.91690 0.93083 0.89988 0.91918 0.91895 0.91999 0.83819 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 8.14 127.69 1.04 2.67 16 2 N -0.52 -20.59 3.64 -922.44 -3.35 -23.95 16 3 C 0.09 3.78 3.89 86.30 0.34 4.11 16 4 C 0.02 0.71 1.24 -52.93 -0.07 0.65 16 5 C -0.52 -28.83 9.14 25.60 0.23 -28.59 16 6 H 0.02 1.22 8.06 -2.91 -0.02 1.19 16 7 C 0.10 5.27 4.79 84.66 0.41 5.68 16 8 N -0.88 -49.63 13.96 21.45 0.30 -49.33 16 9 Si 0.89 41.09 25.37 68.60 1.74 42.83 16 10 H -0.24 -10.00 4.77 99.48 0.47 -9.53 16 11 H -0.31 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 C -0.21 -8.73 9.96 30.62 0.30 -8.43 16 14 C -0.19 -7.58 8.35 30.62 0.26 -7.33 16 15 C 0.08 2.67 4.70 86.31 0.41 3.08 16 16 C -0.12 -3.46 1.98 -52.18 -0.10 -3.56 16 17 C -0.10 -3.62 9.38 71.98 0.68 -2.94 16 18 C -0.13 -2.78 9.94 30.62 0.30 -2.47 16 19 C 0.17 4.96 3.94 30.62 0.12 5.08 16 20 F -0.17 -5.56 16.82 44.97 0.76 -4.80 16 21 F -0.17 -5.11 14.95 44.97 0.67 -4.44 16 22 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 23 H 0.05 1.91 5.65 -2.39 -0.01 1.90 16 24 H 0.06 2.45 5.95 -2.39 -0.01 2.44 16 25 H 0.04 1.28 8.00 -2.38 -0.02 1.26 16 26 H 0.06 2.45 3.16 -2.38 -0.01 2.44 16 27 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 28 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.09 3.24 7.96 -2.38 -0.02 3.22 16 31 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.05 1.47 7.56 -2.39 -0.02 1.45 16 33 H 0.08 2.72 6.16 -2.38 -0.01 2.71 16 34 H 0.06 2.77 7.91 -2.39 -0.02 2.75 16 35 H 0.06 1.93 7.66 -2.39 -0.02 1.91 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.55 302.47 4.84 -55.71 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.82 Total: 16.03 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.91 Total: -32.06 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -3.05 Total: -73.27 kcal Atomic # 9 Polarization: -10.67 SS G_CDS: 1.43 Total: -9.24 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.74 Total: 42.83 kcal Total: -60.55 4.84 -55.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701766249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.971 kcal (2) G-P(sol) polarization free energy of solvation -60.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds