Wall clock time and date at job start Mon Mar 30 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99780 * 2 1 4 4 C 1.53001 * 109.47313 * 296.10306 * 3 2 1 5 5 C 1.50700 * 115.55148 * 305.30559 * 4 3 2 6 6 H 1.07996 * 120.00471 * 114.80667 * 5 4 3 7 7 C 1.37875 * 119.99903 * 294.80161 * 5 4 3 8 8 N 1.31515 * 120.00283 * 173.54364 * 7 5 4 9 9 Si 1.86807 * 119.99846 * 353.27295 * 7 5 4 10 10 H 1.48498 * 109.47182 * 94.55776 * 9 7 5 11 11 H 1.48507 * 109.46928 * 214.55955 * 9 7 5 12 12 H 1.48496 * 109.46887 * 334.55782 * 9 7 5 13 13 C 1.52998 * 117.49690 * 90.96641 * 4 3 2 14 14 C 1.52996 * 117.49999 * 159.62576 * 4 3 2 15 15 C 1.46896 * 110.99795 * 123.95161 * 2 1 3 16 16 C 1.53001 * 109.46894 * 160.82348 * 15 2 1 17 17 C 1.53002 * 115.55183 * 319.87273 * 16 15 2 18 18 C 1.52996 * 117.49938 * 105.58109 * 16 15 2 19 19 C 1.53003 * 117.50084 * 174.20668 * 16 15 2 20 20 F 1.39896 * 117.49349 * 359.97438 * 19 16 15 21 21 F 1.39897 * 117.50011 * 144.99600 * 19 16 15 22 22 H 1.09002 * 109.46772 * 65.91665 * 1 2 3 23 23 H 1.09000 * 109.47127 * 185.92046 * 1 2 3 24 24 H 1.09001 * 109.46998 * 305.92075 * 1 2 3 25 25 H 1.09003 * 109.46576 * 176.10860 * 3 2 1 26 26 H 1.08996 * 109.47329 * 56.10474 * 3 2 1 27 27 H 0.97001 * 119.99812 * 180.02562 * 8 7 5 28 28 H 1.09005 * 117.50358 * 215.00545 * 13 4 3 29 29 H 1.09006 * 117.49943 * 0.03154 * 13 4 3 30 30 H 1.08995 * 117.49799 * 359.97438 * 14 4 3 31 31 H 1.09002 * 117.49963 * 144.97839 * 14 4 3 32 32 H 1.08997 * 109.47398 * 280.81878 * 15 2 1 33 33 H 1.09004 * 109.47228 * 40.82785 * 15 2 1 34 34 H 1.08999 * 109.47398 * 56.30807 * 17 16 15 35 35 H 1.08997 * 109.47325 * 176.31399 * 17 16 15 36 36 H 1.09004 * 109.46943 * 296.31366 * 17 16 15 37 37 H 1.09008 * 117.49849 * 214.98014 * 18 16 15 38 38 H 1.08999 * 117.50050 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5857 2.0751 -1.2954 5 6 1.9688 1.3666 -2.5691 6 1 1.2016 0.9854 -3.2267 7 6 3.2987 1.2052 -2.8949 8 7 3.6368 0.4787 -3.9378 9 14 4.6201 2.0246 -1.8595 10 1 5.1112 1.0676 -0.8358 11 1 5.7481 2.4375 -2.7328 12 1 4.0514 3.2202 -1.1870 13 6 0.2697 2.8555 -1.2895 14 6 1.6044 3.6049 -1.3047 15 6 1.9954 -0.7659 1.1376 16 6 3.4502 -1.1522 0.8629 17 6 3.7584 -1.5848 -0.5719 18 6 4.5388 -0.3895 1.6205 19 6 4.2233 -1.8404 1.9897 20 9 3.5460 -2.0678 3.1924 21 9 5.1578 -2.8170 1.6291 22 1 -0.3633 0.4194 -0.9382 23 1 -0.3633 -1.0222 0.1060 24 1 -0.3633 0.6029 0.8322 25 1 3.0829 1.3432 0.0697 26 1 1.5906 1.9160 0.8530 27 1 4.5725 0.3648 -4.1667 28 1 -0.3189 2.8566 -2.2070 29 1 -0.3038 2.8681 -0.3627 30 1 1.9082 4.1101 -0.3880 31 1 1.8942 4.0990 -2.2321 32 1 1.9456 -0.1567 2.0401 33 1 1.3997 -1.6684 1.2749 34 1 3.4621 -0.7943 -1.2614 35 1 4.8272 -1.7732 -0.6730 36 1 3.2055 -2.4952 -0.8037 37 1 5.4749 -0.1956 1.0967 38 1 4.2186 0.3878 2.3144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701766254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:18 Heat of formation + Delta-G solvation = -32.836805 kcal Electronic energy + Delta-G solvation = -21010.058837 eV Core-core repulsion = 17718.613820 eV Total energy + Delta-G solvation = -3291.445017 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.47396 -47.14828 -38.58499 -36.83442 -34.52541 -32.04175 -28.28012 -27.37869 -26.77582 -25.26285 -22.46958 -21.94855 -21.52124 -19.24289 -18.90545 -17.46079 -16.40707 -16.20254 -15.75510 -14.95408 -14.66060 -14.49395 -13.95012 -13.82493 -13.47712 -13.42924 -13.24463 -13.14571 -12.77332 -12.46930 -12.01571 -11.81563 -11.63707 -11.52848 -11.31116 -11.01180 -10.82586 -10.55603 -10.40904 -10.11451 -10.01903 -9.49874 -9.33071 -8.99732 -8.56142 -8.34922 -7.61538 -6.00957 -3.97680 3.18993 3.27181 3.29742 3.41505 3.45949 4.26509 4.47652 4.49467 4.65206 4.84514 5.04488 5.21936 5.31656 5.55547 5.62084 5.68368 5.78761 5.84720 5.92465 5.97491 6.02651 6.10317 6.17093 6.22893 6.40743 6.43370 6.46963 6.48731 6.66081 6.74389 7.05941 7.12993 7.21177 7.63748 7.72780 7.88245 8.60037 9.01576 9.63013 11.11031 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.009028 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.284564 B = 3100.860650 C = 3734.103260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.505 5.505 3 C 0.092 3.908 4 C 0.009 3.991 5 C -0.456 4.456 6 H 0.074 0.926 7 C 0.085 3.915 8 N -0.898 5.898 9 Si 0.853 3.147 10 H -0.271 1.271 11 H -0.297 1.297 12 H -0.254 1.254 13 C -0.187 4.187 14 C -0.197 4.197 15 C 0.087 3.913 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.179 4.179 19 C 0.185 3.815 20 F -0.167 7.167 21 F -0.162 7.162 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.011 0.989 25 H 0.066 0.934 26 H 0.010 0.990 27 H 0.261 0.739 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.298 11.030 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.228 5.228 3 C -0.036 4.036 4 C 0.008 3.992 5 C -0.493 4.493 6 H 0.092 0.908 7 C -0.116 4.116 8 N -0.536 5.536 9 Si 0.681 3.319 10 H -0.198 1.198 11 H -0.225 1.225 12 H -0.178 1.178 13 C -0.224 4.224 14 C -0.235 4.235 15 C -0.041 4.041 16 C -0.094 4.094 17 C -0.174 4.174 18 C -0.216 4.216 19 C 0.148 3.852 20 F -0.148 7.148 21 F -0.143 7.143 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.860 -1.643 10.507 10.669 hybrid contribution 0.761 0.661 1.546 1.845 sum -0.099 -0.982 12.053 12.093 Atomic orbital electron populations 1.22355 0.87334 1.00237 1.01396 1.61637 1.07337 1.14229 1.39553 1.21889 0.98938 0.87075 0.95669 1.19399 0.96154 0.88720 0.94965 1.20076 0.92697 1.34621 1.01924 0.90751 1.24754 0.98009 0.94258 0.94613 1.69905 1.17316 1.38828 1.27507 0.87287 0.82026 0.81533 0.81016 1.19762 1.22467 1.17820 1.22838 0.91025 1.08097 1.00467 1.23069 1.01600 0.98129 1.00687 1.21581 0.91770 0.98453 0.92316 1.22956 0.94449 0.97418 0.94558 1.21413 1.00028 1.04066 0.91883 1.24594 1.02662 0.91802 1.02591 1.20435 0.92582 0.87590 0.84628 1.92969 1.79697 1.95605 1.46517 1.92984 1.65347 1.64767 1.91198 0.89804 0.92579 0.97040 0.91630 0.97247 0.92873 0.89819 0.91443 0.91726 0.89602 0.94730 0.90080 0.86368 0.93495 0.91879 0.86218 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 8.94 60.07 0.54 1.10 16 2 N -0.51 -9.30 3.37 -242.91 -0.82 -10.12 16 3 C 0.09 1.80 4.33 -3.82 -0.02 1.79 16 4 C 0.01 0.19 0.34 -155.66 -0.05 0.14 16 5 C -0.46 -11.80 9.07 -34.44 -0.31 -12.11 16 6 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.09 2.27 4.26 -17.82 -0.08 2.19 16 8 N -0.90 -25.81 13.96 55.43 0.77 -25.04 16 9 Si 0.85 20.07 24.29 -169.99 -4.13 15.94 16 10 H -0.27 -5.99 6.85 56.52 0.39 -5.60 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.25 -5.73 5.68 56.52 0.32 -5.41 16 13 C -0.19 -3.59 8.41 -26.70 -0.22 -3.81 16 14 C -0.20 -4.00 8.02 -26.70 -0.21 -4.21 16 15 C 0.09 1.40 4.72 -3.83 -0.02 1.39 16 16 C -0.09 -1.54 1.81 -154.51 -0.28 -1.82 16 17 C -0.12 -2.22 9.09 37.16 0.34 -1.89 16 18 C -0.18 -2.73 9.31 -26.73 -0.25 -2.98 16 19 C 0.18 2.91 5.14 -26.73 -0.14 2.77 16 20 F -0.17 -2.59 17.14 2.25 0.04 -2.55 16 21 F -0.16 -2.69 16.95 2.25 0.04 -2.65 16 22 H 0.08 1.50 6.54 -51.93 -0.34 1.16 16 23 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 24 H 0.01 0.17 8.09 -51.93 -0.42 -0.25 16 25 H 0.07 1.35 4.03 -51.93 -0.21 1.14 16 26 H 0.01 0.17 8.05 -51.93 -0.42 -0.24 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 32 H 0.03 0.52 7.81 -51.93 -0.41 0.12 16 33 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 34 H 0.12 2.66 5.50 -51.93 -0.29 2.37 16 35 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 1.83 7.91 -51.92 -0.41 1.42 16 38 H 0.12 1.55 8.09 -51.93 -0.42 1.13 16 LS Contribution 305.30 15.07 4.60 4.60 Total: -1.00 -27.17 305.30 -6.09 -33.27 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.89 Total: 3.99 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.70 Total: -17.44 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.04 Total: -35.16 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.08 Total: -5.20 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.13 Total: 15.94 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.17 -6.09 -33.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701766254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.430 kcal (2) G-P(sol) polarization free energy of solvation -27.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds