Wall clock time and date at job start Mon Mar 30 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99780 * 2 1 4 4 C 1.53001 * 109.47313 * 296.10306 * 3 2 1 5 5 C 1.50700 * 115.55148 * 305.30559 * 4 3 2 6 6 H 1.07996 * 120.00471 * 114.80667 * 5 4 3 7 7 C 1.37875 * 119.99903 * 294.80161 * 5 4 3 8 8 N 1.31515 * 120.00283 * 173.54364 * 7 5 4 9 9 Si 1.86807 * 119.99846 * 353.27295 * 7 5 4 10 10 H 1.48498 * 109.47182 * 94.55776 * 9 7 5 11 11 H 1.48507 * 109.46928 * 214.55955 * 9 7 5 12 12 H 1.48496 * 109.46887 * 334.55782 * 9 7 5 13 13 C 1.52998 * 117.49690 * 90.96641 * 4 3 2 14 14 C 1.52996 * 117.49999 * 159.62576 * 4 3 2 15 15 C 1.46896 * 110.99795 * 123.95161 * 2 1 3 16 16 C 1.53001 * 109.46894 * 160.82348 * 15 2 1 17 17 C 1.53002 * 115.55183 * 319.87273 * 16 15 2 18 18 C 1.52996 * 117.49938 * 105.58109 * 16 15 2 19 19 C 1.53003 * 117.50084 * 174.20668 * 16 15 2 20 20 F 1.39896 * 117.49349 * 359.97438 * 19 16 15 21 21 F 1.39897 * 117.50011 * 144.99600 * 19 16 15 22 22 H 1.09002 * 109.46772 * 65.91665 * 1 2 3 23 23 H 1.09000 * 109.47127 * 185.92046 * 1 2 3 24 24 H 1.09001 * 109.46998 * 305.92075 * 1 2 3 25 25 H 1.09003 * 109.46576 * 176.10860 * 3 2 1 26 26 H 1.08996 * 109.47329 * 56.10474 * 3 2 1 27 27 H 0.97001 * 119.99812 * 180.02562 * 8 7 5 28 28 H 1.09005 * 117.50358 * 215.00545 * 13 4 3 29 29 H 1.09006 * 117.49943 * 0.03154 * 13 4 3 30 30 H 1.08995 * 117.49799 * 359.97438 * 14 4 3 31 31 H 1.09002 * 117.49963 * 144.97839 * 14 4 3 32 32 H 1.08997 * 109.47398 * 280.81878 * 15 2 1 33 33 H 1.09004 * 109.47228 * 40.82785 * 15 2 1 34 34 H 1.08999 * 109.47398 * 56.30807 * 17 16 15 35 35 H 1.08997 * 109.47325 * 176.31399 * 17 16 15 36 36 H 1.09004 * 109.46943 * 296.31366 * 17 16 15 37 37 H 1.09008 * 117.49849 * 214.98014 * 18 16 15 38 38 H 1.08999 * 117.50050 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.5857 2.0751 -1.2954 5 6 1.9688 1.3666 -2.5691 6 1 1.2016 0.9854 -3.2267 7 6 3.2987 1.2052 -2.8949 8 7 3.6368 0.4787 -3.9378 9 14 4.6201 2.0246 -1.8595 10 1 5.1112 1.0676 -0.8358 11 1 5.7481 2.4375 -2.7328 12 1 4.0514 3.2202 -1.1870 13 6 0.2697 2.8555 -1.2895 14 6 1.6044 3.6049 -1.3047 15 6 1.9954 -0.7659 1.1376 16 6 3.4502 -1.1522 0.8629 17 6 3.7584 -1.5848 -0.5719 18 6 4.5388 -0.3895 1.6205 19 6 4.2233 -1.8404 1.9897 20 9 3.5460 -2.0678 3.1924 21 9 5.1578 -2.8170 1.6291 22 1 -0.3633 0.4194 -0.9382 23 1 -0.3633 -1.0222 0.1060 24 1 -0.3633 0.6029 0.8322 25 1 3.0829 1.3432 0.0697 26 1 1.5906 1.9160 0.8530 27 1 4.5725 0.3648 -4.1667 28 1 -0.3189 2.8566 -2.2070 29 1 -0.3038 2.8681 -0.3627 30 1 1.9082 4.1101 -0.3880 31 1 1.8942 4.0990 -2.2321 32 1 1.9456 -0.1567 2.0401 33 1 1.3997 -1.6684 1.2749 34 1 3.4621 -0.7943 -1.2614 35 1 4.8272 -1.7732 -0.6730 36 1 3.2055 -2.4952 -0.8037 37 1 5.4749 -0.1956 1.0967 38 1 4.2186 0.3878 2.3144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701766254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:17 Heat of formation + Delta-G solvation = -48.046516 kcal Electronic energy + Delta-G solvation = -21010.718380 eV Core-core repulsion = 17718.613820 eV Total energy + Delta-G solvation = -3292.104560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.70858 -48.38480 -39.98701 -38.29345 -35.92773 -34.06797 -29.63144 -28.91122 -28.09896 -27.16116 -23.71320 -23.30569 -23.09063 -20.68283 -20.51923 -18.70395 -18.15057 -17.58911 -16.99641 -16.67983 -16.06417 -15.90142 -15.41654 -15.08070 -14.95684 -14.75146 -14.68514 -14.56906 -14.40818 -13.85683 -13.59586 -13.29536 -13.18779 -12.92037 -12.72120 -12.52439 -12.35556 -12.16101 -12.05438 -11.85314 -11.31843 -11.24886 -10.79945 -10.68743 -10.37135 -10.13594 -8.92870 -8.08076 -6.07469 1.40570 1.48894 1.58490 1.96157 2.07128 2.52064 2.95413 3.20421 3.26546 3.39978 3.54322 3.65183 3.93466 4.19477 4.35095 4.39357 4.46158 4.50897 4.54336 4.64013 4.66737 4.75917 4.76997 4.84806 4.94286 4.95808 4.98123 5.00519 5.16508 5.29940 5.46016 5.56810 5.62027 5.86848 6.34553 6.40530 6.54617 6.93447 7.56886 9.07644 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.009028 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.284564 B = 3100.860650 C = 3734.103260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.532 5.532 3 C 0.100 3.900 4 C -0.014 4.014 5 C -0.447 4.447 6 H 0.025 0.975 7 C 0.040 3.960 8 N -0.949 5.949 9 Si 0.904 3.096 10 H -0.250 1.250 11 H -0.315 1.315 12 H -0.232 1.232 13 C -0.168 4.168 14 C -0.194 4.194 15 C 0.092 3.908 16 C -0.108 4.108 17 C -0.112 4.112 18 C -0.169 4.169 19 C 0.192 3.808 20 F -0.163 7.163 21 F -0.170 7.170 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.258 0.742 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -0.268 14.300 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.255 5.255 3 C -0.028 4.028 4 C -0.015 4.015 5 C -0.485 4.485 6 H 0.043 0.957 7 C -0.157 4.157 8 N -0.590 5.590 9 Si 0.730 3.270 10 H -0.175 1.175 11 H -0.244 1.244 12 H -0.155 1.155 13 C -0.205 4.205 14 C -0.233 4.233 15 C -0.036 4.036 16 C -0.109 4.109 17 C -0.169 4.169 18 C -0.207 4.207 19 C 0.155 3.845 20 F -0.143 7.143 21 F -0.150 7.150 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.113 -0.605 13.808 13.866 hybrid contribution 0.723 0.285 0.442 0.894 sum -0.389 -0.320 14.249 14.258 Atomic orbital electron populations 1.22303 0.86284 1.01472 1.00917 1.61518 1.08519 1.13976 1.41478 1.21714 0.98520 0.87769 0.94807 1.19328 0.98692 0.89363 0.94122 1.20136 0.91421 1.33877 1.03021 0.95724 1.25376 1.00094 0.94715 0.95508 1.70065 1.17378 1.41440 1.30092 0.86466 0.78876 0.81734 0.79885 1.17458 1.24409 1.15528 1.22844 0.90401 1.05792 1.01453 1.23084 1.02200 0.96736 1.01244 1.21594 0.91143 0.98830 0.92050 1.22908 0.95667 0.99004 0.93355 1.21231 0.99767 1.02770 0.93153 1.24729 1.01899 0.91912 1.02150 1.20331 0.92086 0.87865 0.84214 1.92982 1.79622 1.95620 1.46100 1.92973 1.65572 1.65201 1.91302 0.92209 0.91142 0.94882 0.92529 0.94788 0.93350 0.90955 0.88379 0.89070 0.91143 0.92705 0.89064 0.89762 0.93657 0.92176 0.86313 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 8.94 127.69 1.14 2.28 16 2 N -0.53 -18.37 3.37 -922.44 -3.11 -21.48 16 3 C 0.10 3.59 4.33 86.30 0.37 3.96 16 4 C -0.01 -0.58 0.34 -52.93 -0.02 -0.60 16 5 C -0.45 -23.68 9.07 25.60 0.23 -23.45 16 6 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 7 C 0.04 2.17 4.26 84.65 0.36 2.53 16 8 N -0.95 -57.02 13.96 21.45 0.30 -56.72 16 9 Si 0.90 41.16 24.29 68.60 1.67 42.82 16 10 H -0.25 -10.36 6.85 99.48 0.68 -9.67 16 11 H -0.32 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.23 -9.64 5.68 99.48 0.57 -9.08 16 13 C -0.17 -6.04 8.41 30.62 0.26 -5.78 16 14 C -0.19 -7.37 8.02 30.62 0.25 -7.13 16 15 C 0.09 2.65 4.72 86.30 0.41 3.06 16 16 C -0.11 -3.34 1.81 -52.18 -0.09 -3.44 16 17 C -0.11 -4.21 9.09 71.98 0.65 -3.56 16 18 C -0.17 -4.58 9.31 30.59 0.28 -4.29 16 19 C 0.19 5.51 5.14 30.60 0.16 5.67 16 20 F -0.16 -4.47 17.14 44.97 0.77 -3.70 16 21 F -0.17 -5.31 16.95 44.97 0.76 -4.55 16 22 H 0.06 2.07 6.54 -2.39 -0.02 2.06 16 23 H 0.07 1.88 7.84 -2.39 -0.02 1.86 16 24 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 25 H 0.06 2.13 4.03 -2.39 -0.01 2.12 16 26 H 0.03 1.07 8.05 -2.39 -0.02 1.05 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.10 2.94 8.14 -2.38 -0.02 2.93 16 30 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 33 H 0.09 2.41 7.75 -2.38 -0.02 2.39 16 34 H 0.08 3.82 5.50 -2.39 -0.01 3.80 16 35 H 0.04 1.64 7.84 -2.39 -0.02 1.63 16 36 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 37 H 0.12 3.25 7.91 -2.38 -0.02 3.24 16 38 H 0.14 3.09 8.09 -2.39 -0.02 3.07 16 Total: -1.00 -60.29 305.30 5.27 -55.02 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.87 Total: 19.34 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 4.00 Total: -30.74 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -2.81 Total: -78.19 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.53 Total: -8.25 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.67 Total: 42.82 kcal Total: -60.29 5.27 -55.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701766254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.975 kcal (2) G-P(sol) polarization free energy of solvation -60.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds