Wall clock time and date at job start Mon Mar 30 2020 07:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 115.56248 * 2 1 4 4 C 1.53004 * 117.49841 * 214.31007 * 2 1 3 5 5 C 1.52997 * 60.00117 * 252.51240 * 4 2 1 6 6 C 1.52998 * 117.50258 * 107.51391 * 5 4 2 7 7 N 1.46898 * 117.49614 * 252.51499 * 5 4 2 8 8 C 1.46902 * 110.99776 * 293.98818 * 7 5 4 9 9 H 1.08994 * 109.47255 * 328.11374 * 8 7 5 10 10 C 1.50702 * 109.47082 * 88.11039 * 8 7 5 11 11 H 1.08005 * 119.99918 * 33.90431 * 10 8 7 12 12 C 1.37877 * 119.99967 * 213.62521 * 10 8 7 13 13 N 1.31514 * 119.99946 * 354.64339 * 12 10 8 14 14 Si 1.86799 * 119.99747 * 174.64371 * 12 10 8 15 15 H 1.48506 * 109.47287 * 60.00409 * 14 12 10 16 16 H 1.48503 * 109.47149 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47383 * 300.00521 * 14 12 10 18 18 C 1.50707 * 109.47091 * 208.11005 * 8 7 5 19 19 C 1.38229 * 119.99933 * 314.56604 * 18 8 7 20 20 C 1.38235 * 119.99972 * 179.78868 * 19 18 8 21 21 C 1.38242 * 119.99687 * 0.46242 * 20 19 18 22 22 C 1.38234 * 119.99816 * 359.76979 * 21 20 19 23 23 C 1.38232 * 120.00331 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47184 * 274.30744 * 1 2 3 25 25 H 1.08992 * 109.47474 * 34.31088 * 1 2 3 26 26 H 1.09003 * 109.46996 * 154.31098 * 1 2 3 27 27 H 1.09000 * 109.47576 * 205.68955 * 3 2 1 28 28 H 1.09002 * 109.47178 * 325.69014 * 3 2 1 29 29 H 1.08996 * 109.47499 * 85.68659 * 3 2 1 30 30 H 1.09002 * 117.49808 * 145.01721 * 4 2 1 31 31 H 1.08998 * 117.49738 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47180 * 210.26452 * 6 5 4 33 33 H 1.09004 * 109.46671 * 330.26736 * 6 5 4 34 34 H 1.09004 * 109.47102 * 90.26168 * 6 5 4 35 35 H 1.00903 * 111.00298 * 170.03843 * 7 5 4 36 36 H 0.96996 * 119.99385 * 179.97438 * 13 12 10 37 37 H 1.08004 * 120.00132 * 359.97438 * 19 18 8 38 38 H 1.08001 * 120.00271 * 180.25527 * 20 19 18 39 39 H 1.07997 * 119.99885 * 179.79045 * 21 20 19 40 40 H 1.08003 * 119.99526 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00215 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 1.3592 -2.1566 1.4715 7 7 3.4966 -0.7897 1.4432 8 6 4.5158 -1.8173 1.1916 9 1 4.0332 -2.7882 1.0805 10 6 5.2663 -1.4819 -0.0715 11 1 5.4461 -0.4500 -0.3349 12 6 5.7283 -2.4924 -0.8878 13 7 5.6075 -3.7473 -0.5134 14 14 6.5256 -2.0789 -2.5257 15 1 7.7219 -1.2301 -2.2936 16 1 6.9342 -3.3331 -3.2080 17 1 5.5556 -1.3449 -3.3773 18 6 5.4783 -1.8644 2.3503 19 6 5.9826 -0.6906 2.8781 20 6 6.8621 -0.7336 3.9438 21 6 7.2447 -1.9510 4.4754 22 6 6.7441 -3.1250 3.9444 23 6 5.8613 -3.0818 2.8815 24 1 -0.3634 0.0772 1.0248 25 1 -0.3634 0.8488 -0.5792 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5793 29 1 2.2772 1.7414 1.0247 30 1 3.1715 -0.8752 -1.2683 31 1 1.6112 -1.8582 -1.2686 32 1 1.0206 -1.7550 2.4266 33 1 0.4957 -2.3874 0.8476 34 1 1.9365 -3.0651 1.6434 35 1 3.3512 -0.6595 2.4332 36 1 5.9322 -4.4581 -1.0879 37 1 5.6872 0.2603 2.4599 38 1 7.2529 0.1837 4.3588 39 1 7.9344 -1.9848 5.3058 40 1 7.0433 -4.0761 4.3595 41 1 5.4706 -3.9990 2.4665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701951196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:55 Heat of formation + Delta-G solvation = 39.091598 kcal Electronic energy + Delta-G solvation = -19954.486568 eV Core-core repulsion = 17220.390131 eV Total energy + Delta-G solvation = -2734.096438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.82063 -37.97410 -34.25368 -31.98642 -30.22859 -29.97162 -28.55980 -27.30873 -26.49826 -25.77286 -22.75332 -21.59900 -20.29075 -19.28825 -17.59546 -16.42938 -15.85302 -14.91728 -14.66918 -14.23987 -14.11246 -13.83391 -13.35953 -13.02286 -12.69920 -12.54153 -12.34975 -12.17047 -11.91339 -11.76094 -11.61989 -11.47315 -11.43007 -11.01903 -10.85949 -10.84743 -10.47689 -10.23807 -10.17207 -9.65168 -9.57868 -9.03618 -8.73572 -8.42670 -8.02077 -7.65735 -7.25105 -6.04118 -4.04791 2.31402 2.33798 3.30848 3.35243 3.38581 4.37306 4.41736 4.74537 5.11598 5.27588 5.39412 5.48438 5.63275 5.67639 5.72030 5.78491 5.87270 6.01703 6.06212 6.20877 6.23974 6.26945 6.36721 6.37810 6.46118 6.53635 6.58610 6.62317 6.66985 6.75295 6.92536 6.97668 6.99945 7.22885 7.32591 7.35688 7.41113 7.76090 7.86022 7.93820 8.18876 8.29230 8.72343 9.04294 9.56223 11.01169 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.009131 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.733830 B = 3065.726257 C = 4223.642827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.131 4.131 3 C -0.092 4.092 4 C -0.141 4.141 5 C 0.062 3.938 6 C -0.137 4.137 7 N -0.647 5.647 8 C 0.241 3.759 9 H 0.043 0.957 10 C -0.477 4.477 11 H 0.061 0.939 12 C 0.064 3.936 13 N -0.886 5.886 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.275 1.275 18 C -0.038 4.038 19 C -0.112 4.112 20 C -0.135 4.135 21 C -0.153 4.153 22 C -0.132 4.132 23 C -0.108 4.108 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.317 0.683 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 4.043 4.653 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.132 4.132 3 C -0.149 4.149 4 C -0.178 4.178 5 C -0.031 4.031 6 C -0.196 4.196 7 N -0.276 5.276 8 C 0.134 3.866 9 H 0.061 0.939 10 C -0.516 4.516 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.524 5.524 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.039 4.039 19 C -0.131 4.131 20 C -0.153 4.153 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.137 0.863 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.241 4.258 4.073 7.886 hybrid contribution 0.438 -0.791 -0.366 0.976 sum -4.803 3.466 3.707 6.988 Atomic orbital electron populations 1.21322 0.93614 1.00912 1.00804 1.21713 0.92857 0.92320 1.06309 1.21027 1.00049 0.93007 1.00806 1.23301 1.02159 0.98721 0.93627 1.21250 0.91793 0.96309 0.93702 1.21756 0.99182 0.98993 0.99699 1.60599 1.05311 1.48511 1.13175 1.18344 0.86958 0.90853 0.90415 0.93899 1.20881 1.33987 0.92806 1.03894 0.92124 1.24960 0.95820 0.95077 0.98009 1.69909 1.46438 0.98836 1.37211 0.86703 0.79899 0.77581 0.84127 1.20308 1.21468 1.20100 1.20776 0.98089 0.91907 0.93160 1.20985 0.97406 0.98760 0.95908 1.20984 0.99399 0.96847 0.98067 1.20812 1.02029 0.93068 1.01181 1.20986 0.98886 0.97215 0.97909 1.21098 0.98071 0.98394 0.95121 0.93056 0.92986 0.93082 0.91726 0.94385 0.93041 0.86680 0.90701 0.93275 0.92749 0.92361 0.86626 0.92910 0.86327 0.87680 0.87854 0.87693 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.71 37.16 0.32 -1.17 16 2 C -0.13 -2.18 2.70 -154.51 -0.42 -2.59 16 3 C -0.09 -1.48 9.31 37.15 0.35 -1.13 16 4 C -0.14 -2.73 8.78 -26.73 -0.23 -2.97 16 5 C 0.06 1.15 2.14 -131.60 -0.28 0.87 16 6 C -0.14 -2.29 9.23 37.16 0.34 -1.95 16 7 N -0.65 -12.99 5.36 -95.46 -0.51 -13.50 16 8 C 0.24 5.58 2.16 -70.01 -0.15 5.43 16 9 H 0.04 1.12 6.17 -51.93 -0.32 0.80 16 10 C -0.48 -12.26 6.54 -34.44 -0.23 -12.48 16 11 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 12 C 0.06 1.69 5.45 -17.82 -0.10 1.60 16 13 N -0.89 -24.24 12.87 55.43 0.71 -23.53 16 14 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 19 C -0.11 -2.28 9.01 -39.59 -0.36 -2.64 16 20 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 21 C -0.15 -2.71 10.05 -39.58 -0.40 -3.10 16 22 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 23 C -0.11 -2.35 9.67 -39.58 -0.38 -2.73 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.64 7.92 -51.93 -0.41 0.23 16 26 H 0.05 0.68 7.27 -51.93 -0.38 0.30 16 27 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 28 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 2.57 6.52 -51.93 -0.34 2.23 16 31 H 0.07 1.38 8.05 -51.93 -0.42 0.97 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.83 6.92 -51.93 -0.36 0.47 16 34 H 0.06 1.07 7.45 -51.93 -0.39 0.68 16 35 H 0.32 6.04 8.04 -39.29 -0.32 5.73 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.12 2.37 7.89 -52.48 -0.41 1.96 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.12 2.69 8.00 -52.49 -0.42 2.27 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -26.47 332.34 -9.29 -35.76 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.66 Total: 10.25 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.81 Total: -29.95 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.20 Total: -37.03 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.47 -9.29 -35.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.849 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds