Wall clock time and date at job start Mon Mar 30 2020 07:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 115.56248 * 2 1 4 4 C 1.53004 * 117.49841 * 214.31007 * 2 1 3 5 5 C 1.52997 * 60.00117 * 252.51240 * 4 2 1 6 6 C 1.52998 * 117.50258 * 107.51391 * 5 4 2 7 7 N 1.46898 * 117.49614 * 252.51499 * 5 4 2 8 8 C 1.46902 * 110.99776 * 293.98818 * 7 5 4 9 9 H 1.08994 * 109.47255 * 328.11374 * 8 7 5 10 10 C 1.50702 * 109.47082 * 88.11039 * 8 7 5 11 11 H 1.08005 * 119.99918 * 33.90431 * 10 8 7 12 12 C 1.37877 * 119.99967 * 213.62521 * 10 8 7 13 13 N 1.31514 * 119.99946 * 354.64339 * 12 10 8 14 14 Si 1.86799 * 119.99747 * 174.64371 * 12 10 8 15 15 H 1.48506 * 109.47287 * 60.00409 * 14 12 10 16 16 H 1.48503 * 109.47149 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47383 * 300.00521 * 14 12 10 18 18 C 1.50707 * 109.47091 * 208.11005 * 8 7 5 19 19 C 1.38229 * 119.99933 * 314.56604 * 18 8 7 20 20 C 1.38235 * 119.99972 * 179.78868 * 19 18 8 21 21 C 1.38242 * 119.99687 * 0.46242 * 20 19 18 22 22 C 1.38234 * 119.99816 * 359.76979 * 21 20 19 23 23 C 1.38232 * 120.00331 * 0.02562 * 22 21 20 24 24 H 1.09006 * 109.47184 * 274.30744 * 1 2 3 25 25 H 1.08992 * 109.47474 * 34.31088 * 1 2 3 26 26 H 1.09003 * 109.46996 * 154.31098 * 1 2 3 27 27 H 1.09000 * 109.47576 * 205.68955 * 3 2 1 28 28 H 1.09002 * 109.47178 * 325.69014 * 3 2 1 29 29 H 1.08996 * 109.47499 * 85.68659 * 3 2 1 30 30 H 1.09002 * 117.49808 * 145.01721 * 4 2 1 31 31 H 1.08998 * 117.49738 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.47180 * 210.26452 * 6 5 4 33 33 H 1.09004 * 109.46671 * 330.26736 * 6 5 4 34 34 H 1.09004 * 109.47102 * 90.26168 * 6 5 4 35 35 H 1.00903 * 111.00298 * 170.03843 * 7 5 4 36 36 H 0.96996 * 119.99385 * 179.97438 * 13 12 10 37 37 H 1.08004 * 120.00132 * 359.97438 * 19 18 8 38 38 H 1.08001 * 120.00271 * 180.25527 * 20 19 18 39 39 H 1.07997 * 119.99885 * 179.79045 * 21 20 19 40 40 H 1.08003 * 119.99526 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00215 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 1.3592 -2.1566 1.4715 7 7 3.4966 -0.7897 1.4432 8 6 4.5158 -1.8173 1.1916 9 1 4.0332 -2.7882 1.0805 10 6 5.2663 -1.4819 -0.0715 11 1 5.4461 -0.4500 -0.3349 12 6 5.7283 -2.4924 -0.8878 13 7 5.6075 -3.7473 -0.5134 14 14 6.5256 -2.0789 -2.5257 15 1 7.7219 -1.2301 -2.2936 16 1 6.9342 -3.3331 -3.2080 17 1 5.5556 -1.3449 -3.3773 18 6 5.4783 -1.8644 2.3503 19 6 5.9826 -0.6906 2.8781 20 6 6.8621 -0.7336 3.9438 21 6 7.2447 -1.9510 4.4754 22 6 6.7441 -3.1250 3.9444 23 6 5.8613 -3.0818 2.8815 24 1 -0.3634 0.0772 1.0248 25 1 -0.3634 0.8488 -0.5792 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5793 29 1 2.2772 1.7414 1.0247 30 1 3.1715 -0.8752 -1.2683 31 1 1.6112 -1.8582 -1.2686 32 1 1.0206 -1.7550 2.4266 33 1 0.4957 -2.3874 0.8476 34 1 1.9365 -3.0651 1.6434 35 1 3.3512 -0.6595 2.4332 36 1 5.9322 -4.4581 -1.0879 37 1 5.6872 0.2603 2.4599 38 1 7.2529 0.1837 4.3588 39 1 7.9344 -1.9848 5.3058 40 1 7.0433 -4.0761 4.3595 41 1 5.4706 -3.9990 2.4665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701951196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:54 Heat of formation + Delta-G solvation = 26.171558 kcal Electronic energy + Delta-G solvation = -19955.046823 eV Core-core repulsion = 17220.390131 eV Total energy + Delta-G solvation = -2734.656693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.36398 -39.46495 -35.96104 -33.87156 -31.71614 -31.51034 -30.03177 -28.59405 -28.18586 -27.33982 -24.51082 -23.15092 -21.87329 -20.88002 -19.05431 -18.34327 -17.42624 -16.61956 -16.37515 -15.82996 -15.64041 -15.27114 -14.86623 -14.42102 -14.40419 -14.04390 -13.75119 -13.70529 -13.50647 -13.16480 -13.07107 -12.89837 -12.87469 -12.75502 -12.66884 -12.39107 -11.98899 -11.85623 -11.77341 -11.49792 -11.37341 -10.60144 -10.40251 -10.11339 -9.56711 -9.27684 -8.92803 -8.05143 -6.11595 0.75474 0.79132 1.38465 1.39155 1.45693 2.42010 2.92454 3.13471 3.30247 3.60519 4.01047 4.07087 4.26347 4.30277 4.33260 4.40208 4.45405 4.63261 4.69225 4.86200 4.88798 4.93815 4.95321 5.02395 5.03454 5.10147 5.17462 5.23465 5.27697 5.33507 5.41944 5.44391 5.48004 5.57231 5.75974 5.79797 5.81334 5.84846 6.13562 6.23905 6.41756 6.58436 6.97772 7.08936 7.51869 8.97330 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.009131 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.733830 B = 3065.726257 C = 4223.642827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.090 4.090 4 C -0.165 4.165 5 C 0.044 3.956 6 C -0.129 4.129 7 N -0.644 5.644 8 C 0.255 3.745 9 H 0.004 0.996 10 C -0.475 4.475 11 H 0.045 0.955 12 C 0.021 3.979 13 N -0.913 5.913 14 Si 0.937 3.063 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.272 1.272 18 C -0.063 4.063 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.143 4.143 22 C -0.132 4.132 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.323 0.677 36 H 0.257 0.743 37 H 0.116 0.884 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.130 0.870 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 5.673 6.188 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.104 4.104 3 C -0.147 4.147 4 C -0.202 4.202 5 C -0.048 4.048 6 C -0.188 4.188 7 N -0.273 5.273 8 C 0.148 3.852 9 H 0.022 0.978 10 C -0.514 4.514 11 H 0.063 0.937 12 C -0.179 4.179 13 N -0.553 5.553 14 Si 0.764 3.236 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.064 4.064 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.150 4.150 23 C -0.151 4.151 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.141 0.859 36 H 0.066 0.934 37 H 0.134 0.866 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.147 0.853 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.548 5.904 5.609 9.854 hybrid contribution 0.535 -1.250 -0.764 1.560 sum -5.013 4.653 4.845 8.382 Atomic orbital electron populations 1.21344 0.90602 1.02101 1.02260 1.21858 0.94825 0.91360 1.02357 1.21021 0.98997 0.93321 1.01384 1.23176 1.01565 1.01259 0.94235 1.21493 0.91875 0.98430 0.93016 1.21675 0.98937 0.97333 1.00814 1.60482 1.05833 1.47324 1.13650 1.17967 0.87427 0.89473 0.90344 0.97827 1.20985 1.33474 0.91796 1.05114 0.93662 1.25522 0.96743 0.95082 1.00507 1.70033 1.47958 0.99336 1.37953 0.85939 0.79076 0.77227 0.81367 1.20270 1.21368 1.19718 1.20701 0.98759 0.93060 0.93914 1.21031 0.98321 0.97762 0.96961 1.21376 0.97877 0.98709 0.96664 1.21267 1.01390 0.92034 1.01419 1.21277 0.97754 0.99267 0.96737 1.21045 0.99879 0.97278 0.96915 0.91509 0.91016 0.92658 0.94562 0.91741 0.92403 0.90289 0.90347 0.91287 0.91031 0.94998 0.85946 0.93367 0.86554 0.84150 0.83808 0.85253 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.71 71.98 0.63 -1.95 16 2 C -0.10 -3.31 2.70 -52.18 -0.14 -3.45 16 3 C -0.09 -2.80 9.31 71.98 0.67 -2.13 16 4 C -0.16 -6.59 8.78 30.59 0.27 -6.32 16 5 C 0.04 1.66 2.14 3.53 0.01 1.67 16 6 C -0.13 -4.29 9.23 71.98 0.66 -3.62 16 7 N -0.64 -26.58 5.36 -455.92 -2.45 -29.03 16 8 C 0.26 12.42 2.16 43.43 0.09 12.52 16 9 H 0.00 0.22 6.17 -2.39 -0.01 0.20 16 10 C -0.47 -25.54 6.54 25.60 0.17 -25.37 16 11 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 12 C 0.02 1.15 5.45 84.65 0.46 1.61 16 13 N -0.91 -52.48 12.87 21.45 0.28 -52.21 16 14 Si 0.94 44.49 29.54 68.60 2.03 46.52 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 C -0.06 -2.87 4.65 -19.87 -0.09 -2.97 16 19 C -0.12 -4.90 9.01 22.27 0.20 -4.70 16 20 C -0.13 -4.29 10.05 22.27 0.22 -4.06 16 21 C -0.14 -4.58 10.05 22.27 0.22 -4.35 16 22 C -0.13 -4.83 10.05 22.27 0.22 -4.60 16 23 C -0.13 -5.90 9.67 22.27 0.22 -5.68 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.07 1.50 7.92 -2.39 -0.02 1.48 16 26 H 0.05 1.32 7.27 -2.39 -0.02 1.30 16 27 H 0.04 1.32 7.90 -2.39 -0.02 1.30 16 28 H 0.06 1.65 7.92 -2.39 -0.02 1.64 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 3.73 6.52 -2.39 -0.02 3.72 16 31 H 0.08 2.99 8.05 -2.39 -0.02 2.97 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.10 6.92 -2.39 -0.02 2.09 16 34 H 0.03 1.21 7.45 -2.38 -0.02 1.19 16 35 H 0.32 12.49 8.04 -89.69 -0.72 11.77 16 36 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.12 4.63 7.89 -2.91 -0.02 4.61 16 38 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.09 4.49 8.00 -2.91 -0.02 4.46 16 Total: -1.00 -60.12 332.34 3.94 -56.17 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.27 Total: 31.98 kcal Atomic # 6 Polarization: -57.24 SS G_CDS: 3.81 Total: -53.43 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -2.17 Total: -81.24 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.12 3.94 -56.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.343 kcal (2) G-P(sol) polarization free energy of solvation -60.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds