Wall clock time and date at job start Mon Mar 30 2020 07:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.56208 * 2 1 4 4 C 1.52997 * 117.49673 * 145.68573 * 2 1 3 5 5 C 1.52999 * 117.49973 * 214.30896 * 2 1 3 6 6 C 1.52995 * 117.51996 * 359.97438 * 5 2 1 7 7 N 1.46898 * 117.49727 * 145.02684 * 5 2 1 8 8 C 1.46897 * 111.00085 * 135.21816 * 7 5 2 9 9 H 1.08994 * 109.47270 * 7.97389 * 8 7 5 10 10 C 1.50700 * 109.47134 * 247.97430 * 8 7 5 11 11 H 1.07995 * 120.00029 * 125.86746 * 10 8 7 12 12 C 1.37884 * 119.99776 * 305.87073 * 10 8 7 13 13 N 1.31505 * 119.99894 * 8.77011 * 12 10 8 14 14 Si 1.86801 * 119.99615 * 188.76759 * 12 10 8 15 15 H 1.48493 * 109.47521 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46859 * 120.00304 * 14 12 10 17 17 H 1.48502 * 109.46867 * 239.99854 * 14 12 10 18 18 C 1.50698 * 109.47140 * 127.97582 * 8 7 5 19 19 C 1.38233 * 120.00311 * 31.87673 * 18 8 7 20 20 C 1.38232 * 120.00077 * 179.78756 * 19 18 8 21 21 C 1.38237 * 120.00220 * 0.46480 * 20 19 18 22 22 C 1.38232 * 119.99448 * 359.76934 * 21 20 19 23 23 C 1.38233 * 120.00531 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47531 * 325.70861 * 1 2 3 25 25 H 1.09008 * 109.46644 * 85.70598 * 1 2 3 26 26 H 1.08997 * 109.47638 * 205.70067 * 1 2 3 27 27 H 1.09001 * 109.47175 * 154.29459 * 3 2 1 28 28 H 1.08994 * 109.47168 * 274.29746 * 3 2 1 29 29 H 1.08998 * 109.46860 * 34.29403 * 3 2 1 30 30 H 1.08999 * 117.49994 * 0.02562 * 4 2 1 31 31 H 1.09006 * 117.50176 * 214.98212 * 4 2 1 32 32 H 1.09003 * 109.46986 * 355.49046 * 6 5 2 33 33 H 1.08998 * 109.47184 * 115.48843 * 6 5 2 34 34 H 1.08998 * 109.47550 * 235.49620 * 6 5 2 35 35 H 1.00894 * 111.00339 * 11.25913 * 7 5 2 36 36 H 0.97006 * 119.99906 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.99679 * 0.02562 * 19 18 8 38 38 H 1.08006 * 120.00098 * 180.25288 * 20 19 18 39 39 H 1.08002 * 120.00350 * 179.78827 * 21 20 19 40 40 H 1.08004 * 119.99969 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 6 1.3594 -2.1568 -1.4710 7 7 3.4967 -0.7897 -1.4431 8 6 4.5116 -1.8243 -1.2029 9 1 4.0533 -2.6712 -0.6925 10 6 5.6136 -1.2574 -0.3455 11 1 5.8968 -1.7564 0.5695 12 6 6.2603 -0.1017 -0.7291 13 7 5.8065 0.5996 -1.7448 14 14 7.7812 0.4679 0.1940 15 1 8.0843 -0.4899 1.2874 16 1 8.9330 0.5316 -0.7412 17 1 7.5355 1.8149 0.7692 18 6 5.0844 -2.2813 -2.5197 19 6 5.1847 -1.3942 -3.5751 20 6 5.7142 -1.8124 -4.7816 21 6 6.1345 -3.1203 -4.9358 22 6 6.0296 -4.0086 -3.8819 23 6 5.5041 -3.5894 -2.6741 24 1 -0.3634 0.8490 0.5790 25 1 -0.3633 0.0770 -1.0249 26 1 -0.3634 -0.9259 0.4456 27 1 3.1823 1.3085 0.4457 28 1 2.2775 1.7412 -1.0247 29 1 1.5810 2.0743 0.5790 30 1 1.6111 -1.8586 1.2680 31 1 3.1715 -0.8751 1.2684 32 1 0.3117 -1.9633 -1.2407 33 1 1.5130 -2.0894 -2.5480 34 1 1.6283 -3.1556 -1.1273 35 1 3.8321 0.1186 -1.1594 36 1 6.2612 1.4129 -2.0145 37 1 4.8530 -0.3734 -3.4557 38 1 5.7963 -1.1182 -5.6049 39 1 6.5450 -3.4479 -5.8795 40 1 6.3584 -5.0304 -4.0022 41 1 5.4218 -4.2836 -1.8509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701951202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:57 Heat of formation + Delta-G solvation = 45.393679 kcal Electronic energy + Delta-G solvation = -20203.975404 eV Core-core repulsion = 17470.152245 eV Total energy + Delta-G solvation = -2733.823159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.87335 -37.84099 -34.39932 -31.51826 -30.04021 -29.64238 -28.77322 -27.29831 -26.47789 -25.74194 -22.70974 -21.31827 -20.28038 -19.28334 -17.44095 -16.57382 -15.69043 -15.16905 -14.40164 -14.31713 -13.90816 -13.62762 -13.35138 -12.94271 -12.72766 -12.34528 -12.22700 -12.08781 -11.69921 -11.64667 -11.52017 -11.45792 -11.36259 -11.04501 -10.86822 -10.70809 -10.43478 -10.33900 -9.99454 -9.96442 -9.50236 -9.20047 -8.72239 -8.56107 -7.76808 -7.37009 -6.89703 -6.11512 -4.27594 2.54538 2.65830 3.20172 3.30228 3.33537 4.29925 4.34741 5.00460 5.14189 5.25615 5.32274 5.49276 5.57944 5.68962 5.85093 5.98093 6.02892 6.05001 6.08771 6.22690 6.30744 6.37570 6.40848 6.47136 6.47165 6.56901 6.59800 6.72223 6.78808 6.85548 6.94783 6.96249 7.08455 7.22502 7.34616 7.57925 7.68279 7.87277 7.97425 8.12047 8.31959 8.44998 8.93557 9.23586 9.42218 10.81323 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.009543 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.331720 B = 2933.321898 C = 4130.815972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.137 4.137 3 C -0.112 4.112 4 C -0.210 4.210 5 C 0.075 3.925 6 C -0.106 4.106 7 N -0.643 5.643 8 C 0.245 3.755 9 H 0.028 0.972 10 C -0.539 4.539 11 H 0.058 0.942 12 C 0.076 3.924 13 N -0.865 5.865 14 Si 0.886 3.114 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.284 1.284 18 C -0.018 4.018 19 C -0.063 4.063 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.142 4.142 23 C -0.139 4.139 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.373 0.627 36 H 0.265 0.735 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.326 -1.626 -0.231 6.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C -0.169 4.169 4 C -0.249 4.249 5 C -0.019 4.019 6 C -0.163 4.163 7 N -0.280 5.280 8 C 0.137 3.863 9 H 0.046 0.954 10 C -0.577 4.577 11 H 0.077 0.923 12 C -0.128 4.128 13 N -0.503 5.503 14 Si 0.714 3.286 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.210 1.210 18 C -0.020 4.020 19 C -0.082 4.082 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.201 0.799 36 H 0.076 0.924 37 H 0.170 0.830 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.453 -1.677 -0.947 6.735 hybrid contribution 1.447 0.431 1.413 2.068 sum -5.006 -1.247 0.465 5.180 Atomic orbital electron populations 1.21282 0.93118 1.00858 1.01168 1.21770 0.93854 0.91909 1.06268 1.21254 0.99998 0.93775 1.01867 1.23826 1.02151 1.00791 0.98161 1.21836 0.94737 0.96659 0.88667 1.21242 0.97250 0.96871 1.00985 1.60523 1.01205 1.08635 1.57601 1.18027 0.89224 0.90560 0.88512 0.95381 1.21539 1.19606 1.09090 1.07491 0.92332 1.24965 0.96819 0.96268 0.94765 1.69677 1.39070 1.15231 1.26274 0.86629 0.83620 0.78423 0.79968 1.19825 1.20734 1.20972 1.20383 0.94461 0.91225 0.95913 1.21566 0.95022 1.01309 0.90284 1.21148 1.01830 0.95337 0.98297 1.20765 1.03914 0.94616 0.98014 1.20751 1.02713 0.98371 0.94240 1.20887 1.01859 0.96490 0.96484 0.92973 0.92509 0.92978 0.91992 0.91953 0.93436 0.90473 0.88515 0.92924 0.91677 0.93280 0.79947 0.92431 0.83011 0.88173 0.88391 0.88207 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 8.34 37.16 0.31 -1.18 16 2 C -0.14 -2.35 2.70 -154.51 -0.42 -2.77 16 3 C -0.11 -1.94 8.49 37.16 0.32 -1.62 16 4 C -0.21 -3.85 9.07 -26.73 -0.24 -4.09 16 5 C 0.07 1.43 2.07 -131.60 -0.27 1.15 16 6 C -0.11 -1.80 9.83 37.16 0.37 -1.44 16 7 N -0.64 -14.32 5.16 -95.47 -0.49 -14.81 16 8 C 0.24 5.81 2.35 -70.02 -0.16 5.64 16 9 H 0.03 0.67 7.40 -51.93 -0.38 0.29 16 10 C -0.54 -13.79 8.71 -34.44 -0.30 -14.09 16 11 H 0.06 1.53 7.83 -52.49 -0.41 1.12 16 12 C 0.08 1.92 4.98 -17.82 -0.09 1.83 16 13 N -0.87 -21.74 8.31 55.43 0.46 -21.28 16 14 Si 0.89 20.29 29.55 -169.99 -5.02 15.27 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.02 -0.43 4.83 -104.62 -0.51 -0.94 16 19 C -0.06 -1.48 8.10 -39.59 -0.32 -1.80 16 20 C -0.15 -3.10 10.05 -39.58 -0.40 -3.49 16 21 C -0.15 -3.02 10.05 -39.58 -0.40 -3.41 16 22 C -0.14 -2.80 10.05 -39.59 -0.40 -3.20 16 23 C -0.14 -3.00 9.69 -39.58 -0.38 -3.38 16 24 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 25 H 0.06 0.76 7.91 -51.92 -0.41 0.35 16 26 H 0.05 0.68 7.49 -51.93 -0.39 0.29 16 27 H 0.06 1.20 7.47 -51.93 -0.39 0.81 16 28 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.05 0.71 7.92 -51.93 -0.41 0.29 16 30 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 31 H 0.10 1.99 8.05 -51.93 -0.42 1.57 16 32 H 0.05 0.77 5.91 -51.93 -0.31 0.46 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.37 8.78 4.00 -39.29 -0.16 8.62 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.15 3.77 5.73 -52.49 -0.30 3.47 16 38 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -25.42 324.23 -9.56 -34.98 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -6.50 Total: 13.75 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -2.90 Total: -32.79 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.03 Total: -36.10 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -25.42 -9.56 -34.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.373 kcal (2) G-P(sol) polarization free energy of solvation -25.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds