Wall clock time and date at job start Mon Mar 30 2020 07:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.56208 * 2 1 4 4 C 1.52997 * 117.49673 * 145.68573 * 2 1 3 5 5 C 1.52999 * 117.49973 * 214.30896 * 2 1 3 6 6 C 1.52995 * 117.51996 * 359.97438 * 5 2 1 7 7 N 1.46898 * 117.49727 * 145.02684 * 5 2 1 8 8 C 1.46897 * 111.00085 * 135.21816 * 7 5 2 9 9 H 1.08994 * 109.47270 * 7.97389 * 8 7 5 10 10 C 1.50700 * 109.47134 * 247.97430 * 8 7 5 11 11 H 1.07995 * 120.00029 * 125.86746 * 10 8 7 12 12 C 1.37884 * 119.99776 * 305.87073 * 10 8 7 13 13 N 1.31505 * 119.99894 * 8.77011 * 12 10 8 14 14 Si 1.86801 * 119.99615 * 188.76759 * 12 10 8 15 15 H 1.48493 * 109.47521 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46859 * 120.00304 * 14 12 10 17 17 H 1.48502 * 109.46867 * 239.99854 * 14 12 10 18 18 C 1.50698 * 109.47140 * 127.97582 * 8 7 5 19 19 C 1.38233 * 120.00311 * 31.87673 * 18 8 7 20 20 C 1.38232 * 120.00077 * 179.78756 * 19 18 8 21 21 C 1.38237 * 120.00220 * 0.46480 * 20 19 18 22 22 C 1.38232 * 119.99448 * 359.76934 * 21 20 19 23 23 C 1.38233 * 120.00531 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47531 * 325.70861 * 1 2 3 25 25 H 1.09008 * 109.46644 * 85.70598 * 1 2 3 26 26 H 1.08997 * 109.47638 * 205.70067 * 1 2 3 27 27 H 1.09001 * 109.47175 * 154.29459 * 3 2 1 28 28 H 1.08994 * 109.47168 * 274.29746 * 3 2 1 29 29 H 1.08998 * 109.46860 * 34.29403 * 3 2 1 30 30 H 1.08999 * 117.49994 * 0.02562 * 4 2 1 31 31 H 1.09006 * 117.50176 * 214.98212 * 4 2 1 32 32 H 1.09003 * 109.46986 * 355.49046 * 6 5 2 33 33 H 1.08998 * 109.47184 * 115.48843 * 6 5 2 34 34 H 1.08998 * 109.47550 * 235.49620 * 6 5 2 35 35 H 1.00894 * 111.00339 * 11.25913 * 7 5 2 36 36 H 0.97006 * 119.99906 * 179.97438 * 13 12 10 37 37 H 1.08002 * 119.99679 * 0.02562 * 19 18 8 38 38 H 1.08006 * 120.00098 * 180.25288 * 20 19 18 39 39 H 1.08002 * 120.00350 * 179.78827 * 21 20 19 40 40 H 1.08004 * 119.99969 * 180.02562 * 22 21 20 41 41 H 1.07997 * 120.00296 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 0.7651 5 6 2.2365 -1.1210 -0.7649 6 6 1.3594 -2.1568 -1.4710 7 7 3.4967 -0.7897 -1.4431 8 6 4.5116 -1.8243 -1.2029 9 1 4.0533 -2.6712 -0.6925 10 6 5.6136 -1.2574 -0.3455 11 1 5.8968 -1.7564 0.5695 12 6 6.2603 -0.1017 -0.7291 13 7 5.8065 0.5996 -1.7448 14 14 7.7812 0.4679 0.1940 15 1 8.0843 -0.4899 1.2874 16 1 8.9330 0.5316 -0.7412 17 1 7.5355 1.8149 0.7692 18 6 5.0844 -2.2813 -2.5197 19 6 5.1847 -1.3942 -3.5751 20 6 5.7142 -1.8124 -4.7816 21 6 6.1345 -3.1203 -4.9358 22 6 6.0296 -4.0086 -3.8819 23 6 5.5041 -3.5894 -2.6741 24 1 -0.3634 0.8490 0.5790 25 1 -0.3633 0.0770 -1.0249 26 1 -0.3634 -0.9259 0.4456 27 1 3.1823 1.3085 0.4457 28 1 2.2775 1.7412 -1.0247 29 1 1.5810 2.0743 0.5790 30 1 1.6111 -1.8586 1.2680 31 1 3.1715 -0.8751 1.2684 32 1 0.3117 -1.9633 -1.2407 33 1 1.5130 -2.0894 -2.5480 34 1 1.6283 -3.1556 -1.1273 35 1 3.8321 0.1186 -1.1594 36 1 6.2612 1.4129 -2.0145 37 1 4.8530 -0.3734 -3.4557 38 1 5.7963 -1.1182 -5.6049 39 1 6.5450 -3.4479 -5.8795 40 1 6.3584 -5.0304 -4.0022 41 1 5.4218 -4.2836 -1.8509 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701951202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:56 Heat of formation + Delta-G solvation = 34.419306 kcal Electronic energy + Delta-G solvation = -20204.451289 eV Core-core repulsion = 17470.152245 eV Total energy + Delta-G solvation = -2734.299043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41534 -39.42435 -36.14963 -33.32194 -31.59470 -31.25326 -30.29293 -28.66493 -28.09632 -27.31467 -24.49532 -22.96207 -21.87488 -20.87168 -18.93124 -18.45753 -17.28927 -16.89411 -16.08846 -15.85617 -15.54897 -15.19973 -14.76804 -14.54211 -14.20189 -13.96191 -13.79444 -13.56797 -13.34082 -13.14556 -13.03030 -13.01635 -12.82243 -12.67011 -12.50948 -12.29689 -12.23303 -11.85043 -11.66754 -11.62736 -11.26777 -10.74484 -10.56117 -10.08291 -9.42221 -9.06997 -8.61642 -8.02190 -6.25943 0.87802 1.01990 1.34112 1.39869 1.46909 2.38575 2.88272 3.12658 3.39790 3.80604 3.93712 4.06774 4.15241 4.31911 4.38141 4.39553 4.56391 4.76932 4.77403 4.83244 4.94682 4.95456 4.96579 5.04667 5.09799 5.11214 5.13764 5.15276 5.25910 5.28492 5.38905 5.52299 5.55675 5.60771 5.67148 5.75584 5.93719 6.08525 6.13894 6.41753 6.53197 6.63639 7.12685 7.37551 7.50265 8.85832 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.009543 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.331720 B = 2933.321898 C = 4130.815972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.212 4.212 5 C 0.048 3.952 6 C -0.097 4.097 7 N -0.649 5.649 8 C 0.252 3.748 9 H 0.013 0.987 10 C -0.558 4.558 11 H 0.040 0.960 12 C 0.047 3.953 13 N -0.869 5.869 14 Si 0.933 3.067 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.277 1.277 18 C -0.043 4.043 19 C -0.084 4.084 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.362 0.638 36 H 0.265 0.735 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 -2.117 -1.013 7.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.124 4.124 3 C -0.166 4.166 4 C -0.251 4.251 5 C -0.045 4.045 6 C -0.155 4.155 7 N -0.284 5.284 8 C 0.143 3.857 9 H 0.031 0.969 10 C -0.597 4.597 11 H 0.058 0.942 12 C -0.156 4.156 13 N -0.506 5.506 14 Si 0.760 3.240 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.203 1.203 18 C -0.044 4.044 19 C -0.103 4.103 20 C -0.173 4.173 21 C -0.168 4.168 22 C -0.156 4.156 23 C -0.174 4.174 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.188 0.812 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.224 -2.173 -1.731 7.739 hybrid contribution 1.691 0.562 1.636 2.419 sum -5.533 -1.611 -0.095 5.763 Atomic orbital electron populations 1.21302 0.89942 1.02505 1.02255 1.21946 0.96000 0.90779 1.03663 1.21214 0.99052 0.94902 1.01401 1.23715 1.01553 1.02334 0.97531 1.22112 0.94350 0.98935 0.89097 1.21197 0.98439 0.96100 0.99769 1.60503 1.01938 1.07651 1.58272 1.17868 0.88996 0.90201 0.88596 0.96904 1.21627 1.20879 1.09688 1.07510 0.94162 1.25387 0.98447 0.96287 0.95500 1.69790 1.39250 1.15061 1.26507 0.85903 0.81188 0.78054 0.78837 1.20380 1.20974 1.20319 1.20460 0.95710 0.92383 0.95894 1.21428 0.96758 1.00480 0.91619 1.21413 1.01242 0.96734 0.97871 1.21176 1.02506 0.93675 0.99422 1.21147 1.01136 1.00115 0.93180 1.21104 1.02394 0.96003 0.97893 0.91093 0.91685 0.91605 0.94979 0.92950 0.90546 0.88492 0.91628 0.90015 0.93015 0.93485 0.81177 0.92506 0.85221 0.86228 0.84655 0.84732 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.55 8.34 71.98 0.60 -1.95 16 2 C -0.12 -4.11 2.70 -52.18 -0.14 -4.25 16 3 C -0.11 -3.76 8.49 71.98 0.61 -3.15 16 4 C -0.21 -7.84 9.07 30.59 0.28 -7.56 16 5 C 0.05 1.87 2.07 3.53 0.01 1.87 16 6 C -0.10 -3.26 9.83 71.98 0.71 -2.55 16 7 N -0.65 -29.97 5.16 -455.95 -2.35 -32.33 16 8 C 0.25 12.45 2.35 43.42 0.10 12.55 16 9 H 0.01 0.64 7.40 -2.39 -0.02 0.63 16 10 C -0.56 -29.84 8.71 25.60 0.22 -29.62 16 11 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 12 C 0.05 2.46 4.98 84.66 0.42 2.88 16 13 N -0.87 -44.96 8.31 21.45 0.18 -44.78 16 14 Si 0.93 42.54 29.55 68.60 2.03 44.57 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 C -0.04 -2.07 4.83 -19.87 -0.10 -2.16 16 19 C -0.08 -3.99 8.10 22.27 0.18 -3.81 16 20 C -0.15 -6.28 10.05 22.27 0.22 -6.05 16 21 C -0.15 -5.40 10.05 22.27 0.22 -5.18 16 22 C -0.14 -5.09 10.05 22.27 0.22 -4.86 16 23 C -0.16 -6.69 9.69 22.27 0.22 -6.47 16 24 H 0.07 1.52 7.92 -2.39 -0.02 1.50 16 25 H 0.06 1.54 7.91 -2.38 -0.02 1.52 16 26 H 0.06 1.47 7.49 -2.39 -0.02 1.45 16 27 H 0.03 1.28 7.47 -2.39 -0.02 1.26 16 28 H 0.05 1.90 8.07 -2.39 -0.02 1.88 16 29 H 0.08 2.16 7.92 -2.39 -0.02 2.14 16 30 H 0.10 3.14 8.05 -2.39 -0.02 3.12 16 31 H 0.07 2.83 8.05 -2.38 -0.02 2.81 16 32 H 0.08 2.20 5.91 -2.39 -0.01 2.19 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.36 17.83 4.00 -89.70 -0.36 17.47 16 36 H 0.26 13.21 8.31 -92.70 -0.77 12.44 16 37 H 0.13 6.66 5.73 -2.91 -0.02 6.65 16 38 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 40 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -56.11 324.23 4.27 -51.84 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: 0.64 Total: 41.02 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 3.78 Total: -60.32 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.18 Total: -77.11 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -56.11 4.27 -51.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.262 kcal (2) G-P(sol) polarization free energy of solvation -56.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds