Wall clock time and date at job start Mon Mar 30 2020 07:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 115.56207 * 2 1 4 4 C 1.53005 * 117.49782 * 214.31403 * 2 1 3 5 5 C 1.53001 * 117.49899 * 145.69318 * 2 1 3 6 6 C 1.52995 * 117.51747 * 0.02562 * 5 2 1 7 7 N 1.46902 * 117.49715 * 214.97820 * 5 2 1 8 8 C 1.46893 * 111.00119 * 179.97438 * 7 5 2 9 9 H 1.09009 * 109.47398 * 34.99536 * 8 7 5 10 10 C 1.50709 * 109.47095 * 275.00100 * 8 7 5 11 11 H 1.07995 * 120.00126 * 125.32601 * 10 8 7 12 12 C 1.37881 * 119.99483 * 305.32329 * 10 8 7 13 13 N 1.31512 * 120.00150 * 9.52509 * 12 10 8 14 14 Si 1.86797 * 119.99405 * 189.52170 * 12 10 8 15 15 H 1.48495 * 109.47482 * 90.00186 * 14 12 10 16 16 H 1.48500 * 109.46936 * 210.00322 * 14 12 10 17 17 H 1.48498 * 109.47381 * 329.99856 * 14 12 10 18 18 C 1.50693 * 109.47528 * 155.00114 * 8 7 5 19 19 C 1.38234 * 120.00189 * 32.39459 * 18 8 7 20 20 C 1.38240 * 120.00194 * 179.79473 * 19 18 8 21 21 C 1.38236 * 120.00066 * 0.45734 * 20 19 18 22 22 C 1.38237 * 119.99867 * 359.77496 * 21 20 19 23 23 C 1.38238 * 119.99881 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46581 * 274.31025 * 1 2 3 25 25 H 1.08999 * 109.46738 * 34.30655 * 1 2 3 26 26 H 1.08995 * 109.46750 * 154.30975 * 1 2 3 27 27 H 1.08997 * 109.46858 * 205.68990 * 3 2 1 28 28 H 1.08996 * 109.47255 * 325.69226 * 3 2 1 29 29 H 1.08998 * 109.46941 * 85.68984 * 3 2 1 30 30 H 1.08997 * 117.49648 * 145.02143 * 4 2 1 31 31 H 1.08994 * 117.51944 * 359.97438 * 4 2 1 32 32 H 1.08993 * 109.47398 * 299.88349 * 6 5 2 33 33 H 1.08997 * 109.47368 * 59.88518 * 6 5 2 34 34 H 1.09004 * 109.47015 * 179.88263 * 6 5 2 35 35 H 1.00901 * 110.99762 * 303.93907 * 7 5 2 36 36 H 0.97000 * 119.99832 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.99491 * 359.97438 * 19 18 8 38 38 H 1.07994 * 119.99885 * 180.25635 * 20 19 18 39 39 H 1.07994 * 119.99869 * 179.79168 * 21 20 19 40 40 H 1.07993 * 120.00205 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99928 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 6 1.3593 -2.1568 1.4709 7 7 3.4967 -0.7897 1.4432 8 6 4.0495 -1.9646 2.1301 9 1 3.8340 -2.8607 1.5480 10 6 3.4228 -2.0896 3.4950 11 1 2.9388 -3.0105 3.7847 12 6 3.4676 -1.0280 4.3738 13 7 3.8860 0.1489 3.9626 14 14 2.9337 -1.2619 6.1486 15 1 4.1035 -1.6681 6.9680 16 1 2.3819 0.0137 6.6716 17 1 1.8911 -2.3170 6.2170 18 6 5.5411 -1.8063 2.2749 19 6 6.0899 -0.5483 2.4397 20 6 7.4579 -0.4035 2.5768 21 6 8.2778 -1.5158 2.5395 22 6 7.7295 -2.7733 2.3699 23 6 6.3612 -2.9185 2.2370 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8489 -0.5792 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5792 29 1 2.2773 1.7413 1.0247 30 1 3.1715 -0.8751 -1.2683 31 1 1.6116 -1.8588 -1.2682 32 1 0.7311 -1.6584 2.2091 33 1 0.7289 -2.6596 0.7375 34 1 1.9930 -2.8906 1.9691 35 1 4.1654 -0.4021 0.7946 36 1 3.9171 0.8958 4.5808 37 1 5.4496 0.3211 2.4643 38 1 7.8862 0.5789 2.7097 39 1 9.3468 -1.4022 2.6432 40 1 8.3701 -3.6423 2.3404 41 1 5.9328 -3.9010 2.1040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701951606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:59 Heat of formation + Delta-G solvation = 56.196978 kcal Electronic energy + Delta-G solvation = -20202.679708 eV Core-core repulsion = 17469.325016 eV Total energy + Delta-G solvation = -2733.354693 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.85665 -37.91379 -34.40634 -31.53354 -30.10069 -29.80616 -28.38320 -27.57801 -26.18283 -25.73118 -22.62552 -21.46715 -20.27062 -19.50038 -17.37207 -16.29946 -15.80946 -14.94049 -14.64899 -14.31001 -13.81029 -13.63788 -13.34206 -13.03876 -12.61487 -12.38978 -12.24185 -11.94461 -11.75034 -11.65140 -11.44512 -11.38157 -11.09651 -10.96311 -10.85216 -10.72670 -10.41269 -10.17658 -10.02043 -9.86996 -9.30995 -9.22254 -8.83029 -8.36686 -7.88086 -7.50486 -6.67075 -5.81736 -3.97597 2.40269 2.49808 3.33516 3.40320 3.43128 4.47152 4.48348 4.88912 5.12326 5.39335 5.40802 5.49436 5.68630 5.74881 5.78833 5.87875 5.95458 6.13407 6.15961 6.30673 6.32504 6.37234 6.42249 6.52055 6.52930 6.57203 6.65400 6.69501 6.77839 6.85945 6.98120 7.03637 7.04533 7.19224 7.30430 7.43267 7.60115 7.88855 7.91189 8.15139 8.21571 8.47568 8.82062 9.09259 9.65981 11.11832 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.009138 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.483055 B = 3063.397112 C = 4021.348167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.233 4.233 5 C 0.104 3.896 6 C -0.105 4.105 7 N -0.598 5.598 8 C 0.251 3.749 9 H 0.005 0.995 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.092 3.908 13 N -0.826 5.826 14 Si 0.875 3.125 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.043 4.043 19 C -0.081 4.081 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.140 4.140 23 C -0.132 4.132 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.085 0.915 35 H 0.310 0.690 36 H 0.253 0.747 37 H 0.159 0.841 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -0.456 -6.311 6.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.132 4.132 3 C -0.156 4.156 4 C -0.274 4.274 5 C 0.010 3.990 6 C -0.162 4.162 7 N -0.225 5.225 8 C 0.144 3.856 9 H 0.023 0.977 10 C -0.553 4.553 11 H 0.074 0.926 12 C -0.116 4.116 13 N -0.459 5.459 14 Si 0.703 3.297 15 H -0.210 1.210 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.044 4.044 19 C -0.099 4.099 20 C -0.161 4.161 21 C -0.171 4.171 22 C -0.159 4.159 23 C -0.151 4.151 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.176 0.824 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.369 -0.006 -5.649 5.661 hybrid contribution 0.200 -0.547 0.397 0.705 sum -0.169 -0.553 -5.251 5.283 Atomic orbital electron populations 1.21228 0.93204 1.00444 1.01343 1.21673 0.93831 0.91894 1.05818 1.21121 0.98534 0.93731 1.02251 1.24037 1.02016 1.02481 0.98840 1.21570 0.94761 0.95797 0.86861 1.21393 0.98386 0.97826 0.98639 1.60587 1.02401 1.31363 1.28193 1.18186 0.86319 0.87080 0.94007 0.97718 1.20780 1.37599 0.99242 0.97704 0.92638 1.24791 0.94592 0.95041 0.97170 1.69988 1.43289 0.99598 1.33043 0.86903 0.78740 0.77459 0.86620 1.20967 1.21430 1.20133 1.20551 0.96826 0.92386 0.94680 1.21753 0.93413 0.99708 0.95056 1.21157 0.94921 0.97351 1.02662 1.20814 0.98335 0.93348 1.04562 1.20798 0.95084 0.96449 1.03523 1.20903 0.93171 0.98283 1.02731 0.92378 0.93351 0.93275 0.93414 0.94231 0.91113 0.90168 0.90305 0.92292 0.95009 0.89630 0.87203 0.93690 0.82394 0.87936 0.88189 0.87988 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 8.88 37.16 0.33 -1.27 16 2 C -0.13 -2.26 2.70 -154.50 -0.42 -2.68 16 3 C -0.10 -1.67 9.16 37.16 0.34 -1.33 16 4 C -0.23 -3.97 9.17 -26.73 -0.24 -4.22 16 5 C 0.10 2.02 2.78 -131.60 -0.37 1.65 16 6 C -0.11 -2.04 7.85 37.15 0.29 -1.74 16 7 N -0.60 -12.89 4.08 -95.46 -0.39 -13.28 16 8 C 0.25 5.75 2.02 -70.02 -0.14 5.60 16 9 H 0.01 0.12 6.87 -51.92 -0.36 -0.24 16 10 C -0.52 -13.00 6.65 -34.43 -0.23 -13.22 16 11 H 0.06 1.42 7.46 -52.49 -0.39 1.03 16 12 C 0.09 2.35 5.20 -17.82 -0.09 2.26 16 13 N -0.83 -21.27 9.24 55.43 0.51 -20.76 16 14 Si 0.87 20.60 29.55 -169.99 -5.02 15.58 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.04 -0.97 4.65 -104.63 -0.49 -1.45 16 19 C -0.08 -1.79 7.66 -39.58 -0.30 -2.09 16 20 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 21 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.14 -2.63 10.05 -39.58 -0.40 -3.03 16 23 C -0.13 -2.73 9.69 -39.58 -0.38 -3.11 16 24 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 25 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 26 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 27 H 0.05 0.78 7.69 -51.93 -0.40 0.39 16 28 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.35 7.99 -51.93 -0.42 0.93 16 31 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 32 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 33 H 0.03 0.53 7.77 -51.93 -0.40 0.12 16 34 H 0.09 1.80 4.54 -51.93 -0.24 1.56 16 35 H 0.31 6.54 7.02 -39.29 -0.28 6.27 16 36 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16 37 H 0.16 3.74 5.59 -52.49 -0.29 3.44 16 38 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -25.51 321.97 -9.44 -34.94 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.49 Total: 9.73 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -2.89 Total: -31.08 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.12 Total: -34.03 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.51 -9.44 -34.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.140 kcal (2) G-P(sol) polarization free energy of solvation -25.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds