Wall clock time and date at job start Mon Mar 30 2020 07:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 115.56207 * 2 1 4 4 C 1.53005 * 117.49782 * 214.31403 * 2 1 3 5 5 C 1.53001 * 117.49899 * 145.69318 * 2 1 3 6 6 C 1.52995 * 117.51747 * 0.02562 * 5 2 1 7 7 N 1.46902 * 117.49715 * 214.97820 * 5 2 1 8 8 C 1.46893 * 111.00119 * 179.97438 * 7 5 2 9 9 H 1.09009 * 109.47398 * 34.99536 * 8 7 5 10 10 C 1.50709 * 109.47095 * 275.00100 * 8 7 5 11 11 H 1.07995 * 120.00126 * 125.32601 * 10 8 7 12 12 C 1.37881 * 119.99483 * 305.32329 * 10 8 7 13 13 N 1.31512 * 120.00150 * 9.52509 * 12 10 8 14 14 Si 1.86797 * 119.99405 * 189.52170 * 12 10 8 15 15 H 1.48495 * 109.47482 * 90.00186 * 14 12 10 16 16 H 1.48500 * 109.46936 * 210.00322 * 14 12 10 17 17 H 1.48498 * 109.47381 * 329.99856 * 14 12 10 18 18 C 1.50693 * 109.47528 * 155.00114 * 8 7 5 19 19 C 1.38234 * 120.00189 * 32.39459 * 18 8 7 20 20 C 1.38240 * 120.00194 * 179.79473 * 19 18 8 21 21 C 1.38236 * 120.00066 * 0.45734 * 20 19 18 22 22 C 1.38237 * 119.99867 * 359.77496 * 21 20 19 23 23 C 1.38238 * 119.99881 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46581 * 274.31025 * 1 2 3 25 25 H 1.08999 * 109.46738 * 34.30655 * 1 2 3 26 26 H 1.08995 * 109.46750 * 154.30975 * 1 2 3 27 27 H 1.08997 * 109.46858 * 205.68990 * 3 2 1 28 28 H 1.08996 * 109.47255 * 325.69226 * 3 2 1 29 29 H 1.08998 * 109.46941 * 85.68984 * 3 2 1 30 30 H 1.08997 * 117.49648 * 145.02143 * 4 2 1 31 31 H 1.08994 * 117.51944 * 359.97438 * 4 2 1 32 32 H 1.08993 * 109.47398 * 299.88349 * 6 5 2 33 33 H 1.08997 * 109.47368 * 59.88518 * 6 5 2 34 34 H 1.09004 * 109.47015 * 179.88263 * 6 5 2 35 35 H 1.00901 * 110.99762 * 303.93907 * 7 5 2 36 36 H 0.97000 * 119.99832 * 179.97438 * 13 12 10 37 37 H 1.08000 * 119.99491 * 359.97438 * 19 18 8 38 38 H 1.07994 * 119.99885 * 180.25635 * 20 19 18 39 39 H 1.07994 * 119.99869 * 179.79168 * 21 20 19 40 40 H 1.07993 * 120.00205 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.99928 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1210 0.7649 6 6 1.3593 -2.1568 1.4709 7 7 3.4967 -0.7897 1.4432 8 6 4.0495 -1.9646 2.1301 9 1 3.8340 -2.8607 1.5480 10 6 3.4228 -2.0896 3.4950 11 1 2.9388 -3.0105 3.7847 12 6 3.4676 -1.0280 4.3738 13 7 3.8860 0.1489 3.9626 14 14 2.9337 -1.2619 6.1486 15 1 4.1035 -1.6681 6.9680 16 1 2.3819 0.0137 6.6716 17 1 1.8911 -2.3170 6.2170 18 6 5.5411 -1.8063 2.2749 19 6 6.0899 -0.5483 2.4397 20 6 7.4579 -0.4035 2.5768 21 6 8.2778 -1.5158 2.5395 22 6 7.7295 -2.7733 2.3699 23 6 6.3612 -2.9185 2.2370 24 1 -0.3632 0.0772 1.0248 25 1 -0.3633 0.8489 -0.5792 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5792 29 1 2.2773 1.7413 1.0247 30 1 3.1715 -0.8751 -1.2683 31 1 1.6116 -1.8588 -1.2682 32 1 0.7311 -1.6584 2.2091 33 1 0.7289 -2.6596 0.7375 34 1 1.9930 -2.8906 1.9691 35 1 4.1654 -0.4021 0.7946 36 1 3.9171 0.8958 4.5808 37 1 5.4496 0.3211 2.4643 38 1 7.8862 0.5789 2.7097 39 1 9.3468 -1.4022 2.6432 40 1 8.3701 -3.6423 2.3404 41 1 5.9328 -3.9010 2.1040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701951606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:59 Heat of formation + Delta-G solvation = 45.380731 kcal Electronic energy + Delta-G solvation = -20203.148736 eV Core-core repulsion = 17469.325016 eV Total energy + Delta-G solvation = -2733.823720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39319 -39.41893 -36.08215 -33.37287 -31.62698 -31.35397 -29.90898 -29.05518 -27.68039 -27.35347 -24.36495 -23.03029 -21.81115 -21.04081 -18.89926 -18.05023 -17.42222 -16.76048 -16.17218 -15.92121 -15.38082 -15.15917 -14.84319 -14.52050 -14.21259 -13.95427 -13.82649 -13.48908 -13.32175 -13.11855 -12.88052 -12.83076 -12.71628 -12.64344 -12.47808 -12.40119 -11.94499 -11.79671 -11.72567 -11.48913 -11.04107 -10.81494 -10.48781 -10.09778 -9.45567 -9.13637 -8.31017 -7.72277 -5.94670 0.82071 0.93737 1.41969 1.46728 1.50698 2.52824 3.03075 3.28548 3.40829 3.69942 4.00590 4.11205 4.25044 4.35074 4.36689 4.40508 4.50278 4.71182 4.80755 4.89321 4.96337 4.97107 5.00099 5.04304 5.11141 5.12038 5.14205 5.20793 5.23066 5.39967 5.46180 5.47143 5.60515 5.65236 5.73572 5.85026 5.87964 6.03948 6.25810 6.37559 6.54885 6.69629 7.10450 7.30405 7.68940 9.14749 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.009138 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.483055 B = 3063.397112 C = 4021.348167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.213 4.213 5 C 0.069 3.931 6 C -0.096 4.096 7 N -0.605 5.605 8 C 0.258 3.742 9 H -0.006 1.006 10 C -0.523 4.523 11 H 0.041 0.959 12 C 0.059 3.941 13 N -0.835 5.835 14 Si 0.917 3.083 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.277 1.277 18 C -0.067 4.067 19 C -0.097 4.097 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.137 4.137 23 C -0.147 4.147 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.308 0.692 36 H 0.248 0.752 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.601 -0.641 -7.358 7.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.129 4.129 3 C -0.151 4.151 4 C -0.253 4.253 5 C -0.024 4.024 6 C -0.153 4.153 7 N -0.232 5.232 8 C 0.150 3.850 9 H 0.011 0.989 10 C -0.561 4.561 11 H 0.059 0.941 12 C -0.147 4.147 13 N -0.469 5.469 14 Si 0.745 3.255 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.068 4.068 19 C -0.115 4.115 20 C -0.168 4.168 21 C -0.165 4.165 22 C -0.155 4.155 23 C -0.166 4.166 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.334 -0.194 -6.702 6.713 hybrid contribution 0.023 -0.522 0.670 0.850 sum 0.358 -0.716 -6.031 6.084 Atomic orbital electron populations 1.21231 0.91458 1.02077 1.01166 1.21840 0.95173 0.91607 1.04297 1.21057 0.99072 0.94098 1.00875 1.23988 1.02237 1.02316 0.96745 1.21713 0.94428 0.97777 0.88505 1.21253 0.98016 0.97278 0.98744 1.60447 1.02971 1.30989 1.28821 1.18005 0.86989 0.87140 0.92842 0.98874 1.20888 1.37702 0.98513 0.99026 0.94106 1.25200 0.95190 0.95179 0.99133 1.70117 1.44083 0.99569 1.33097 0.86250 0.78050 0.77037 0.84168 1.21523 1.21560 1.20214 1.20587 0.96668 0.93291 0.96253 1.21595 0.94446 0.98889 0.96611 1.21414 0.94150 0.99054 1.02170 1.21223 1.00040 0.92591 1.02625 1.21188 0.94529 0.97949 1.01803 1.21120 0.94299 0.98055 1.03121 0.93530 0.91287 0.92030 0.93555 0.91743 0.93886 0.90001 0.88608 0.94104 0.92428 0.91915 0.87396 0.94272 0.84534 0.86071 0.84603 0.84630 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.90 8.88 71.98 0.64 -2.26 16 2 C -0.13 -4.27 2.70 -52.18 -0.14 -4.41 16 3 C -0.09 -3.08 9.16 71.98 0.66 -2.42 16 4 C -0.21 -6.90 9.17 30.60 0.28 -6.62 16 5 C 0.07 2.68 2.78 3.53 0.01 2.69 16 6 C -0.10 -3.74 7.85 71.98 0.57 -3.17 16 7 N -0.61 -26.73 4.08 -455.93 -1.86 -28.59 16 8 C 0.26 12.14 2.02 43.42 0.09 12.23 16 9 H -0.01 -0.31 6.87 -2.38 -0.02 -0.32 16 10 C -0.52 -27.19 6.65 25.60 0.17 -27.02 16 11 H 0.04 2.18 7.46 -2.91 -0.02 2.16 16 12 C 0.06 3.09 5.20 84.66 0.44 3.53 16 13 N -0.83 -44.12 9.24 21.45 0.20 -43.92 16 14 Si 0.92 43.11 29.55 68.60 2.03 45.14 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 C -0.07 -3.03 4.65 -19.87 -0.09 -3.12 16 19 C -0.10 -4.32 7.66 22.27 0.17 -4.15 16 20 C -0.15 -5.74 10.05 22.27 0.22 -5.52 16 21 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 22 C -0.14 -4.77 10.05 22.27 0.22 -4.54 16 23 C -0.15 -5.98 9.69 22.27 0.22 -5.77 16 24 H 0.05 1.43 8.03 -2.39 -0.02 1.41 16 25 H 0.07 1.67 7.92 -2.39 -0.02 1.65 16 26 H 0.06 1.58 7.77 -2.39 -0.02 1.56 16 27 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 28 H 0.06 1.77 7.92 -2.39 -0.02 1.75 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.63 7.99 -2.39 -0.02 2.61 16 31 H 0.10 2.78 7.96 -2.39 -0.02 2.76 16 32 H 0.04 1.69 8.02 -2.39 -0.02 1.67 16 33 H 0.06 1.88 7.77 -2.39 -0.02 1.86 16 34 H 0.06 2.72 4.54 -2.38 -0.01 2.71 16 35 H 0.31 13.39 7.02 -89.69 -0.63 12.76 16 36 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 37 H 0.14 6.66 5.59 -2.91 -0.02 6.65 16 38 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 41 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -55.06 321.97 4.41 -50.65 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.37 Total: 32.04 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 3.68 Total: -55.32 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.66 Total: -72.51 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -55.06 4.41 -50.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701951606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.028 kcal (2) G-P(sol) polarization free energy of solvation -55.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds