Wall clock time and date at job start Mon Mar 30 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.54940 * 2 1 4 4 C 1.53002 * 117.49810 * 145.66280 * 2 1 3 5 5 C 1.52990 * 117.50043 * 214.28920 * 2 1 3 6 6 C 1.52996 * 117.50146 * 359.97438 * 5 2 1 7 7 N 1.46908 * 117.50045 * 145.02090 * 5 2 1 8 8 C 1.46896 * 111.00060 * 179.97438 * 7 5 2 9 9 C 1.50700 * 109.46939 * 180.02562 * 8 7 5 10 10 C 1.38638 * 119.75098 * 269.72693 * 9 8 7 11 11 C 1.37620 * 120.24565 * 179.76502 * 10 9 8 12 12 C 1.40709 * 119.74744 * 0.52827 * 11 10 9 13 13 C 1.41396 * 120.24467 * 179.74661 * 12 11 10 14 14 H 1.08000 * 120.00193 * 24.36549 * 13 12 11 15 15 C 1.39949 * 119.99863 * 204.36787 * 13 12 11 16 16 N 1.30818 * 120.00190 * 17.85640 * 15 13 12 17 17 Si 1.86803 * 119.99699 * 197.85362 * 15 13 12 18 18 H 1.48495 * 109.46991 * 60.00464 * 17 15 13 19 19 H 1.48507 * 109.46847 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47181 * 300.00171 * 17 15 13 21 21 C 1.40724 * 119.51220 * 359.72789 * 12 11 10 22 22 C 1.37609 * 119.74210 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47380 * 325.73023 * 1 2 3 24 24 H 1.08994 * 109.47086 * 205.72267 * 1 2 3 25 25 H 1.09005 * 109.47040 * 85.72138 * 1 2 3 26 26 H 1.09002 * 109.47220 * 34.41231 * 3 2 1 27 27 H 1.09000 * 109.47076 * 154.41262 * 3 2 1 28 28 H 1.09004 * 109.46664 * 274.41605 * 3 2 1 29 29 H 1.09002 * 117.49757 * 214.97670 * 4 2 1 30 30 H 1.08993 * 117.50095 * 359.97438 * 4 2 1 31 31 H 1.09007 * 109.46852 * 60.00293 * 6 5 2 32 32 H 1.08997 * 109.47321 * 179.97438 * 6 5 2 33 33 H 1.08999 * 109.47412 * 300.00695 * 6 5 2 34 34 H 1.00907 * 110.99788 * 56.04618 * 7 5 2 35 35 H 1.08999 * 109.47121 * 300.00048 * 8 7 5 36 36 H 1.09000 * 109.47058 * 60.00388 * 8 7 5 37 37 H 1.07999 * 119.87291 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.12375 * 180.23624 * 11 10 9 39 39 H 0.96999 * 120.00431 * 179.97438 * 16 15 13 40 40 H 1.08001 * 120.12518 * 180.02562 * 21 12 11 41 41 H 1.08007 * 119.87650 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 2.2364 -1.1212 -0.7645 6 6 1.3589 -2.1570 -1.4701 7 7 3.4967 -0.7901 -1.4429 8 6 4.0501 -1.9656 -2.1285 9 6 5.3398 -1.5882 -2.8106 10 6 5.3175 -1.1292 -4.1186 11 6 6.4887 -0.7773 -4.7498 12 6 7.7130 -0.8953 -4.0663 13 6 8.9231 -0.5417 -4.7065 14 1 8.9151 0.1619 -5.5257 15 6 10.1312 -1.1036 -4.2785 16 7 10.1255 -2.1894 -3.5487 17 14 11.7521 -0.3033 -4.7494 18 1 11.7927 1.0826 -4.2176 19 1 12.8760 -1.0870 -4.1765 20 1 11.8762 -0.2697 -6.2288 21 6 7.7240 -1.3675 -2.7406 22 6 6.5402 -1.7078 -2.1272 23 1 -0.3634 0.8492 0.5787 24 1 -0.3633 -0.9258 0.4460 25 1 -0.3633 0.0767 -1.0249 26 1 1.5817 2.0739 0.5808 27 1 3.1828 1.3085 0.4438 28 1 2.2752 1.7423 -1.0247 29 1 3.1715 -0.8746 1.2687 30 1 1.6113 -1.8576 1.2695 31 1 0.7293 -1.6583 -2.2070 32 1 1.9923 -2.8896 -1.9703 33 1 0.7299 -2.6607 -0.7362 34 1 4.1654 -0.4020 -0.7945 35 1 4.2417 -2.7540 -1.4006 36 1 3.3366 -2.3223 -2.8713 37 1 4.3772 -1.0444 -4.6430 38 1 6.4687 -0.4163 -5.7675 39 1 10.9629 -2.5790 -3.2524 40 1 8.6580 -1.4616 -2.2065 41 1 6.5462 -2.0708 -1.1100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702006303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:58 Heat of formation + Delta-G solvation = 28.075303 kcal Electronic energy + Delta-G solvation = -18826.420827 eV Core-core repulsion = 16091.846687 eV Total energy + Delta-G solvation = -2734.574140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.32428 -37.55414 -34.51088 -33.12449 -30.32918 -29.29119 -29.16113 -28.06333 -26.76431 -25.95319 -23.15645 -20.96285 -20.55250 -19.71781 -18.03726 -17.27117 -15.83896 -15.34225 -15.12307 -14.33025 -14.02979 -13.85086 -13.60122 -13.34831 -13.17109 -12.65817 -12.44234 -12.19784 -12.10931 -12.06176 -11.93121 -11.90158 -11.63675 -11.30015 -11.05656 -11.04895 -10.94521 -10.52977 -10.37477 -10.09813 -9.57912 -9.42304 -9.32309 -9.09550 -7.80904 -7.42081 -7.26850 -6.75320 -4.33519 2.76034 3.06493 3.09151 3.11180 3.19954 3.78045 3.93620 4.38833 4.69710 4.72613 4.82816 4.93449 5.13032 5.51409 5.63163 5.69325 5.72541 5.77854 5.82332 5.84836 5.88203 5.89811 5.99072 6.01555 6.12654 6.14447 6.23334 6.35191 6.41735 6.44546 6.46814 6.96644 7.08922 7.29661 7.40051 7.47368 7.63560 7.75208 7.92009 8.07294 8.16682 8.32525 8.65732 8.91287 8.99936 10.19209 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040223 B = 0.003779 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.943439 B = 7406.994063 C = 7499.014643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.215 4.215 5 C 0.066 3.934 6 C -0.119 4.119 7 N -0.643 5.643 8 C 0.123 3.877 9 C -0.215 4.215 10 C -0.068 4.068 11 C -0.229 4.229 12 C 0.113 3.887 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.794 5.794 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.166 4.166 22 C -0.095 4.095 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.342 0.658 35 H 0.020 0.980 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.280 0.720 40 H 0.116 0.884 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.181 1.399 6.622 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.165 4.165 4 C -0.254 4.254 5 C -0.027 4.027 6 C -0.176 4.176 7 N -0.272 5.272 8 C -0.004 4.004 9 C -0.217 4.217 10 C -0.087 4.087 11 C -0.248 4.248 12 C 0.111 3.889 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.186 4.186 22 C -0.114 4.114 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.305 1.449 6.136 13.826 hybrid contribution 1.208 -0.238 0.687 1.410 sum -11.097 1.211 6.823 13.083 Atomic orbital electron populations 1.21296 0.92382 1.01358 1.01685 1.21762 0.94385 0.91832 1.04219 1.21222 0.99370 0.93613 1.02299 1.23989 1.02603 1.02134 0.96700 1.21770 0.94001 0.97651 0.89279 1.21455 0.98715 0.97290 1.00152 1.60418 1.04153 1.30656 1.31996 1.20632 0.94185 0.89773 0.95783 1.18909 0.92380 1.14418 0.95963 1.20332 0.96168 0.98173 0.94010 1.20970 0.93090 1.11888 0.98889 1.17616 0.92057 0.88215 0.91061 1.19578 0.90890 1.23180 1.15709 0.90509 1.25907 1.01320 0.93461 0.93430 1.69820 1.29444 1.14828 1.27811 0.86385 0.80275 0.80342 0.79815 1.18820 1.20371 1.19013 1.21269 0.96451 1.05524 0.95319 1.20524 0.93013 1.00595 0.97276 0.92502 0.92796 0.92210 0.93062 0.92775 0.91468 0.89242 0.89327 0.91784 0.91160 0.92424 0.83841 0.96128 0.91456 0.89479 0.89126 0.90870 0.86584 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 8.88 37.16 0.33 -0.76 16 2 C -0.12 -1.45 2.70 -154.51 -0.42 -1.86 16 3 C -0.11 -1.29 9.16 37.16 0.34 -0.95 16 4 C -0.21 -2.61 9.17 -26.73 -0.24 -2.85 16 5 C 0.07 0.88 2.89 -131.60 -0.38 0.50 16 6 C -0.12 -1.43 8.51 37.16 0.32 -1.11 16 7 N -0.64 -10.39 6.23 -101.22 -0.63 -11.02 16 8 C 0.12 2.19 4.82 -4.98 -0.02 2.16 16 9 C -0.22 -4.67 5.41 -104.33 -0.56 -5.23 16 10 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 11 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 12 C 0.11 3.04 5.58 -106.82 -0.60 2.45 16 13 C -0.46 -12.43 9.05 -37.74 -0.34 -12.78 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 16 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 17 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.17 -4.34 8.70 -38.87 -0.34 -4.67 16 22 C -0.10 -2.21 9.67 -39.66 -0.38 -2.59 16 23 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 24 H 0.05 0.49 7.77 -51.93 -0.40 0.09 16 25 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 26 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 27 H 0.05 0.66 7.69 -51.93 -0.40 0.26 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.11 8.00 -51.93 -0.42 0.70 16 30 H 0.09 0.98 7.96 -51.93 -0.41 0.56 16 31 H 0.06 0.74 8.02 -51.92 -0.42 0.33 16 32 H 0.07 0.89 5.60 -51.93 -0.29 0.60 16 33 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 34 H 0.34 5.65 8.07 -39.29 -0.32 5.33 16 35 H 0.02 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.07 1.15 6.29 -51.93 -0.33 0.82 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 41 H 0.08 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -26.85 331.02 -9.83 -36.68 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.61 Total: 9.53 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -3.16 Total: -33.88 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: -0.02 Total: -31.04 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.85 -9.83 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702006303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.756 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds