Wall clock time and date at job start Mon Mar 30 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 115.54940 * 2 1 4 4 C 1.53002 * 117.49810 * 145.66280 * 2 1 3 5 5 C 1.52990 * 117.50043 * 214.28920 * 2 1 3 6 6 C 1.52996 * 117.50146 * 359.97438 * 5 2 1 7 7 N 1.46908 * 117.50045 * 145.02090 * 5 2 1 8 8 C 1.46896 * 111.00060 * 179.97438 * 7 5 2 9 9 C 1.50700 * 109.46939 * 180.02562 * 8 7 5 10 10 C 1.38638 * 119.75098 * 269.72693 * 9 8 7 11 11 C 1.37620 * 120.24565 * 179.76502 * 10 9 8 12 12 C 1.40709 * 119.74744 * 0.52827 * 11 10 9 13 13 C 1.41396 * 120.24467 * 179.74661 * 12 11 10 14 14 H 1.08000 * 120.00193 * 24.36549 * 13 12 11 15 15 C 1.39949 * 119.99863 * 204.36787 * 13 12 11 16 16 N 1.30818 * 120.00190 * 17.85640 * 15 13 12 17 17 Si 1.86803 * 119.99699 * 197.85362 * 15 13 12 18 18 H 1.48495 * 109.46991 * 60.00464 * 17 15 13 19 19 H 1.48507 * 109.46847 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47181 * 300.00171 * 17 15 13 21 21 C 1.40724 * 119.51220 * 359.72789 * 12 11 10 22 22 C 1.37609 * 119.74210 * 359.97438 * 21 12 11 23 23 H 1.08999 * 109.47380 * 325.73023 * 1 2 3 24 24 H 1.08994 * 109.47086 * 205.72267 * 1 2 3 25 25 H 1.09005 * 109.47040 * 85.72138 * 1 2 3 26 26 H 1.09002 * 109.47220 * 34.41231 * 3 2 1 27 27 H 1.09000 * 109.47076 * 154.41262 * 3 2 1 28 28 H 1.09004 * 109.46664 * 274.41605 * 3 2 1 29 29 H 1.09002 * 117.49757 * 214.97670 * 4 2 1 30 30 H 1.08993 * 117.50095 * 359.97438 * 4 2 1 31 31 H 1.09007 * 109.46852 * 60.00293 * 6 5 2 32 32 H 1.08997 * 109.47321 * 179.97438 * 6 5 2 33 33 H 1.08999 * 109.47412 * 300.00695 * 6 5 2 34 34 H 1.00907 * 110.99788 * 56.04618 * 7 5 2 35 35 H 1.08999 * 109.47121 * 300.00048 * 8 7 5 36 36 H 1.09000 * 109.47058 * 60.00388 * 8 7 5 37 37 H 1.07999 * 119.87291 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.12375 * 180.23624 * 11 10 9 39 39 H 0.96999 * 120.00431 * 179.97438 * 16 15 13 40 40 H 1.08001 * 120.12518 * 180.02562 * 21 12 11 41 41 H 1.08007 * 119.87650 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2364 -1.1207 0.7655 5 6 2.2364 -1.1212 -0.7645 6 6 1.3589 -2.1570 -1.4701 7 7 3.4967 -0.7901 -1.4429 8 6 4.0501 -1.9656 -2.1285 9 6 5.3398 -1.5882 -2.8106 10 6 5.3175 -1.1292 -4.1186 11 6 6.4887 -0.7773 -4.7498 12 6 7.7130 -0.8953 -4.0663 13 6 8.9231 -0.5417 -4.7065 14 1 8.9151 0.1619 -5.5257 15 6 10.1312 -1.1036 -4.2785 16 7 10.1255 -2.1894 -3.5487 17 14 11.7521 -0.3033 -4.7494 18 1 11.7927 1.0826 -4.2176 19 1 12.8760 -1.0870 -4.1765 20 1 11.8762 -0.2697 -6.2288 21 6 7.7240 -1.3675 -2.7406 22 6 6.5402 -1.7078 -2.1272 23 1 -0.3634 0.8492 0.5787 24 1 -0.3633 -0.9258 0.4460 25 1 -0.3633 0.0767 -1.0249 26 1 1.5817 2.0739 0.5808 27 1 3.1828 1.3085 0.4438 28 1 2.2752 1.7423 -1.0247 29 1 3.1715 -0.8746 1.2687 30 1 1.6113 -1.8576 1.2695 31 1 0.7293 -1.6583 -2.2070 32 1 1.9923 -2.8896 -1.9703 33 1 0.7299 -2.6607 -0.7362 34 1 4.1654 -0.4020 -0.7945 35 1 4.2417 -2.7540 -1.4006 36 1 3.3366 -2.3223 -2.8713 37 1 4.3772 -1.0444 -4.6430 38 1 6.4687 -0.4163 -5.7675 39 1 10.9629 -2.5790 -3.2524 40 1 8.6580 -1.4616 -2.2065 41 1 6.5462 -2.0708 -1.1100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702006303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:58 Heat of formation + Delta-G solvation = 15.062322 kcal Electronic energy + Delta-G solvation = -18826.985112 eV Core-core repulsion = 16091.846687 eV Total energy + Delta-G solvation = -2735.138425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40440 -39.33846 -36.14049 -34.71655 -31.86728 -31.12874 -30.42392 -29.07528 -27.77824 -27.50937 -24.79603 -22.87085 -21.84324 -21.22574 -19.21547 -19.05403 -17.32824 -16.81023 -16.35513 -15.92705 -15.62931 -15.27134 -14.83195 -14.63815 -14.30111 -14.20668 -13.80871 -13.65429 -13.51499 -13.22220 -13.03298 -13.02646 -12.83679 -12.76982 -12.70749 -12.50474 -12.32767 -12.03523 -11.88032 -11.35483 -11.31547 -11.10957 -10.99277 -10.38611 -9.37530 -9.22898 -8.92023 -8.63583 -6.32879 0.95140 1.16631 1.37405 1.48431 1.53221 2.20656 2.65928 2.82829 3.33232 3.77077 3.79914 3.88961 3.92963 4.25508 4.31809 4.37899 4.57096 4.60515 4.68700 4.75331 4.84059 4.84601 4.89047 4.93566 4.97571 5.04741 5.08567 5.11292 5.16588 5.20566 5.26221 5.36733 5.38658 5.48536 5.52929 5.71922 5.96697 6.11026 6.22260 6.29651 6.40716 6.50078 6.71114 6.95017 7.05128 8.33236 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040223 B = 0.003779 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.943439 B = 7406.994063 C = 7499.014643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.108 4.108 4 C -0.208 4.208 5 C 0.046 3.954 6 C -0.116 4.116 7 N -0.651 5.651 8 C 0.134 3.866 9 C -0.201 4.201 10 C -0.072 4.072 11 C -0.245 4.245 12 C 0.080 3.920 13 C -0.505 4.505 14 H 0.074 0.926 15 C 0.036 3.964 16 N -0.826 5.826 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.190 4.190 22 C -0.098 4.098 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.337 0.663 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 1.407 7.446 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.166 4.166 4 C -0.248 4.248 5 C -0.046 4.046 6 C -0.174 4.174 7 N -0.280 5.280 8 C 0.006 3.994 9 C -0.203 4.203 10 C -0.090 4.090 11 C -0.265 4.265 12 C 0.078 3.922 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.209 4.209 22 C -0.117 4.117 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.044 0.956 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.890 1.454 6.965 15.606 hybrid contribution 1.525 -0.257 0.500 1.626 sum -12.365 1.197 7.465 14.493 Atomic orbital electron populations 1.21316 0.90573 1.02518 1.02109 1.21894 0.95678 0.91253 1.02943 1.21222 0.99437 0.94321 1.01586 1.24003 1.02663 1.02480 0.95630 1.21935 0.93117 0.99403 0.90127 1.21461 0.98572 0.96738 1.00608 1.60337 1.05011 1.29881 1.32740 1.20505 0.92331 0.90460 0.96119 1.19348 0.93730 1.11619 0.95592 1.20636 0.96410 0.97431 0.94565 1.21174 0.93484 1.12494 0.99316 1.17955 0.93064 0.89391 0.91791 1.19827 0.92211 1.24525 1.16857 0.90828 1.26750 1.04551 0.93524 0.93069 1.69871 1.30759 1.15852 1.28707 0.85265 0.75642 0.79190 0.79676 1.18564 1.19082 1.18356 1.21241 0.96879 1.07355 0.95458 1.20764 0.92753 0.99998 0.98198 0.91393 0.91660 0.92143 0.91327 0.93588 0.92923 0.89885 0.87762 0.91538 0.91967 0.90475 0.84399 0.95598 0.90281 0.86993 0.88776 0.90168 0.88330 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.88 71.98 0.64 -1.16 16 2 C -0.12 -2.50 2.70 -52.18 -0.14 -2.64 16 3 C -0.11 -2.43 9.16 71.98 0.66 -1.77 16 4 C -0.21 -4.52 9.17 30.60 0.28 -4.24 16 5 C 0.05 1.13 2.89 3.52 0.01 1.15 16 6 C -0.12 -2.46 8.51 71.98 0.61 -1.85 16 7 N -0.65 -19.97 6.23 -474.16 -2.95 -22.93 16 8 C 0.13 4.48 4.82 85.56 0.41 4.89 16 9 C -0.20 -8.57 5.41 -19.67 -0.11 -8.68 16 10 C -0.07 -3.23 9.67 22.22 0.21 -3.01 16 11 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 12 C 0.08 4.48 5.58 -21.29 -0.12 4.36 16 13 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 14 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 15 C 0.04 1.85 5.14 85.26 0.44 2.29 16 16 N -0.83 -44.11 10.95 21.83 0.24 -43.87 16 17 Si 0.98 38.97 29.60 68.60 2.03 41.00 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16 22 C -0.10 -4.59 9.67 22.22 0.21 -4.38 16 23 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 24 H 0.06 0.94 7.77 -2.39 -0.02 0.92 16 25 H 0.06 1.01 8.02 -2.38 -0.02 0.99 16 26 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 27 H 0.05 1.08 7.69 -2.39 -0.02 1.06 16 28 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.08 1.91 8.00 -2.39 -0.02 1.90 16 30 H 0.10 1.94 7.96 -2.39 -0.02 1.92 16 31 H 0.07 1.36 8.02 -2.38 -0.02 1.34 16 32 H 0.06 1.41 5.60 -2.39 -0.01 1.39 16 33 H 0.08 1.31 7.77 -2.39 -0.02 1.30 16 34 H 0.34 10.79 8.07 -89.69 -0.72 10.07 16 35 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.08 2.50 6.29 -2.39 -0.02 2.48 16 37 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.09 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 40 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 41 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -58.80 331.02 3.34 -55.46 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.28 Total: 35.54 kcal Atomic # 6 Polarization: -68.95 SS G_CDS: 3.75 Total: -65.20 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -2.71 Total: -66.80 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -58.80 3.34 -55.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702006303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -58.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds