Wall clock time and date at job start Mon Mar 30 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 115.56422 * 2 1 4 4 C 1.53004 * 117.49907 * 214.30328 * 2 1 3 5 5 C 1.53000 * 59.99972 * 252.51442 * 4 2 1 6 6 C 1.53001 * 117.49767 * 107.51499 * 5 4 2 7 7 N 1.46903 * 117.49663 * 252.51166 * 5 4 2 8 8 C 1.46905 * 110.99794 * 248.60811 * 7 5 4 9 9 C 1.50705 * 109.47165 * 180.02562 * 8 7 5 10 10 C 1.38637 * 119.74509 * 90.00041 * 9 8 7 11 11 C 1.37625 * 120.24304 * 179.70452 * 10 9 8 12 12 C 1.40708 * 119.74347 * 0.27322 * 11 10 9 13 13 C 1.41406 * 120.24262 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99645 * 24.39362 * 13 12 11 15 15 C 1.39941 * 120.00275 * 204.38991 * 13 12 11 16 16 N 1.30826 * 119.99936 * 17.85416 * 15 13 12 17 17 Si 1.86794 * 120.00203 * 197.85018 * 15 13 12 18 18 H 1.48503 * 109.47022 * 60.00288 * 17 15 13 19 19 H 1.48503 * 109.47309 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46979 * 300.00013 * 17 15 13 21 21 C 1.40716 * 119.51660 * 0.02562 * 12 11 10 22 22 C 1.37613 * 119.74218 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.47553 * 274.31421 * 1 2 3 24 24 H 1.09004 * 109.47205 * 34.31961 * 1 2 3 25 25 H 1.08999 * 109.46903 * 154.31236 * 1 2 3 26 26 H 1.09002 * 109.47152 * 205.68619 * 3 2 1 27 27 H 1.09006 * 109.46625 * 325.68153 * 3 2 1 28 28 H 1.08996 * 109.47554 * 85.68543 * 3 2 1 29 29 H 1.09005 * 117.49745 * 145.02569 * 4 2 1 30 30 H 1.08994 * 117.51885 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47201 * 231.24939 * 6 5 4 32 32 H 1.08994 * 109.46839 * 351.25423 * 6 5 4 33 33 H 1.09003 * 109.47129 * 111.25253 * 6 5 4 34 34 H 1.00896 * 111.00582 * 12.56225 * 7 5 4 35 35 H 1.08996 * 109.46981 * 60.00478 * 8 7 5 36 36 H 1.08994 * 109.47146 * 300.00177 * 8 7 5 37 37 H 1.07993 * 119.88074 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.12446 * 180.29908 * 11 10 9 39 39 H 0.96996 * 120.00202 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.12892 * 179.97438 * 21 12 11 41 41 H 1.08008 * 119.87512 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1210 0.7651 6 6 1.3591 -2.1564 1.4716 7 7 3.4966 -0.7896 1.4434 8 6 4.0494 -1.9645 2.1304 9 6 5.3385 -1.5867 2.8135 10 6 5.3143 -1.1214 4.1192 11 6 6.4860 -0.7792 4.7550 12 6 7.7108 -0.8977 4.0726 13 6 8.9210 -0.5495 4.7158 14 1 8.9861 -0.5739 5.7936 15 6 10.0344 -0.1735 3.9559 16 7 9.8817 0.1947 2.7099 17 14 11.7384 -0.1969 4.7208 18 1 12.0601 -1.5751 5.1706 19 1 12.7387 0.2421 3.7148 20 1 11.7710 0.7242 5.8852 21 6 7.7227 -1.3651 2.7454 22 6 6.5389 -1.7015 2.1295 23 1 -0.3634 0.0773 1.0247 24 1 -0.3634 0.8488 -0.5794 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1824 1.3083 -0.4454 27 1 1.5812 2.0742 -0.5794 28 1 2.2773 1.7414 1.0247 29 1 3.1716 -0.8753 -1.2681 30 1 1.6115 -1.8591 -1.2678 31 1 0.7312 -1.6576 2.2099 32 1 0.7285 -2.6592 0.7384 33 1 1.9927 -2.8902 1.9699 34 1 4.1653 -0.4020 0.7949 35 1 4.2409 -2.7537 1.4033 36 1 3.3357 -2.3203 2.8733 37 1 4.3731 -1.0312 4.6409 38 1 6.4654 -0.4215 5.7738 39 1 10.6534 0.4550 2.1830 40 1 8.6571 -1.4595 2.2122 41 1 6.5455 -2.0610 1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702006306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:01 Heat of formation + Delta-G solvation = 28.168968 kcal Electronic energy + Delta-G solvation = -18858.846346 eV Core-core repulsion = 16124.276267 eV Total energy + Delta-G solvation = -2734.570078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.30506 -37.55187 -34.50147 -33.11633 -30.31960 -29.28438 -29.15140 -28.04935 -26.74271 -25.94691 -23.15283 -20.96219 -20.53553 -19.71296 -18.01698 -17.27007 -15.82431 -15.31679 -15.12809 -14.32347 -14.02343 -13.83589 -13.59363 -13.33431 -13.15961 -12.65487 -12.42385 -12.20091 -12.09152 -12.03917 -11.92032 -11.83653 -11.63464 -11.37284 -11.08135 -10.99713 -10.91067 -10.57653 -10.29263 -10.10582 -9.57754 -9.41256 -9.30431 -9.11074 -7.78568 -7.41970 -7.26429 -6.74922 -4.33419 2.76244 3.06601 3.09180 3.11159 3.19958 3.79918 3.93735 4.39762 4.70930 4.74394 4.84830 4.95046 5.15215 5.53101 5.64863 5.69774 5.73442 5.79258 5.83996 5.86449 5.89753 5.90087 6.00295 6.03793 6.13915 6.16117 6.25473 6.35613 6.41934 6.45033 6.48735 6.96791 7.09136 7.29923 7.40233 7.49488 7.63639 7.77219 7.92277 8.07272 8.16863 8.32674 8.65861 8.91400 9.00013 10.19512 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003906 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.683417 B = 7167.274350 C = 7424.790483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.215 4.215 5 C 0.065 3.935 6 C -0.118 4.118 7 N -0.644 5.644 8 C 0.124 3.876 9 C -0.215 4.215 10 C -0.068 4.068 11 C -0.229 4.229 12 C 0.113 3.887 13 C -0.464 4.464 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.793 5.793 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.166 4.166 22 C -0.095 4.095 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.343 0.657 35 H 0.020 0.980 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.116 0.884 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 -1.795 -5.501 13.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.122 4.122 3 C -0.165 4.165 4 C -0.254 4.254 5 C -0.027 4.027 6 C -0.176 4.176 7 N -0.273 5.273 8 C -0.003 4.003 9 C -0.217 4.217 10 C -0.087 4.087 11 C -0.248 4.248 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.418 5.418 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.186 4.186 22 C -0.114 4.114 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.993 -1.458 -5.117 13.120 hybrid contribution 1.219 -0.323 -0.652 1.419 sum -10.774 -1.781 -5.769 12.350 Atomic orbital electron populations 1.21295 0.92393 1.01343 1.01671 1.21761 0.94365 0.91853 1.04196 1.21223 0.99399 0.93584 1.02338 1.23990 1.02621 1.02122 0.96707 1.21773 0.94022 0.97670 0.89272 1.21451 0.98700 0.97277 1.00137 1.60406 1.04188 1.30640 1.32038 1.20638 0.94164 0.89812 0.95723 1.18925 0.92464 1.14575 0.95731 1.20334 0.96185 0.98086 0.94072 1.20975 0.92587 1.11289 0.99978 1.17614 0.91941 0.87583 0.91817 1.19577 0.94914 1.40257 0.94622 0.90524 1.25902 1.01248 0.92376 0.94593 1.69824 1.32652 1.30609 1.08733 0.86386 0.80925 0.79796 0.79712 1.18844 1.20365 1.19011 1.21267 0.96612 1.03863 0.96842 1.20522 0.93106 1.00673 0.97095 0.92218 0.92500 0.92814 0.92734 0.93064 0.91451 0.89225 0.89346 0.91787 0.92442 0.91198 0.83720 0.96173 0.91481 0.89482 0.89130 0.90878 0.86583 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 8.88 37.16 0.33 -0.79 16 2 C -0.12 -1.48 2.70 -154.51 -0.42 -1.90 16 3 C -0.11 -1.36 9.16 37.16 0.34 -1.02 16 4 C -0.21 -2.67 9.17 -26.73 -0.25 -2.91 16 5 C 0.07 0.89 2.89 -131.60 -0.38 0.51 16 6 C -0.12 -1.43 8.50 37.16 0.32 -1.11 16 7 N -0.64 -10.65 6.23 -101.21 -0.63 -11.28 16 8 C 0.12 2.19 4.81 -4.97 -0.02 2.17 16 9 C -0.22 -4.67 5.42 -104.33 -0.56 -5.24 16 10 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 11 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 12 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 13 C -0.46 -12.43 9.05 -37.74 -0.34 -12.78 16 14 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 15 C 0.08 1.93 5.14 -17.34 -0.09 1.85 16 16 N -0.79 -20.61 10.95 55.55 0.61 -20.00 16 17 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 22 C -0.09 -2.21 9.67 -39.66 -0.38 -2.59 16 23 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 24 H 0.06 0.52 7.92 -51.93 -0.41 0.11 16 25 H 0.05 0.50 7.77 -51.93 -0.40 0.09 16 26 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 27 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.09 1.15 8.00 -51.93 -0.42 0.73 16 30 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 31 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 32 H 0.06 0.59 7.77 -51.93 -0.40 0.19 16 33 H 0.07 0.88 5.61 -51.93 -0.29 0.59 16 34 H 0.34 5.90 8.08 -39.29 -0.32 5.58 16 35 H 0.02 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.07 1.13 6.29 -51.93 -0.33 0.81 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.12 3.13 6.15 -52.49 -0.32 2.80 16 41 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 331.04 15.07 4.99 4.99 Total: -1.00 -26.87 331.04 -9.83 -36.70 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -6.61 Total: 9.93 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -3.16 Total: -34.05 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: -0.02 Total: -31.28 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.87 -9.83 -36.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702006306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.868 kcal (2) G-P(sol) polarization free energy of solvation -26.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds