Wall clock time and date at job start Mon Mar 30 2020 07:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 115.56422 * 2 1 4 4 C 1.53004 * 117.49907 * 214.30328 * 2 1 3 5 5 C 1.53000 * 59.99972 * 252.51442 * 4 2 1 6 6 C 1.53001 * 117.49767 * 107.51499 * 5 4 2 7 7 N 1.46903 * 117.49663 * 252.51166 * 5 4 2 8 8 C 1.46905 * 110.99794 * 248.60811 * 7 5 4 9 9 C 1.50705 * 109.47165 * 180.02562 * 8 7 5 10 10 C 1.38637 * 119.74509 * 90.00041 * 9 8 7 11 11 C 1.37625 * 120.24304 * 179.70452 * 10 9 8 12 12 C 1.40708 * 119.74347 * 0.27322 * 11 10 9 13 13 C 1.41406 * 120.24262 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99645 * 24.39362 * 13 12 11 15 15 C 1.39941 * 120.00275 * 204.38991 * 13 12 11 16 16 N 1.30826 * 119.99936 * 17.85416 * 15 13 12 17 17 Si 1.86794 * 120.00203 * 197.85018 * 15 13 12 18 18 H 1.48503 * 109.47022 * 60.00288 * 17 15 13 19 19 H 1.48503 * 109.47309 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46979 * 300.00013 * 17 15 13 21 21 C 1.40716 * 119.51660 * 0.02562 * 12 11 10 22 22 C 1.37613 * 119.74218 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.47553 * 274.31421 * 1 2 3 24 24 H 1.09004 * 109.47205 * 34.31961 * 1 2 3 25 25 H 1.08999 * 109.46903 * 154.31236 * 1 2 3 26 26 H 1.09002 * 109.47152 * 205.68619 * 3 2 1 27 27 H 1.09006 * 109.46625 * 325.68153 * 3 2 1 28 28 H 1.08996 * 109.47554 * 85.68543 * 3 2 1 29 29 H 1.09005 * 117.49745 * 145.02569 * 4 2 1 30 30 H 1.08994 * 117.51885 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.47201 * 231.24939 * 6 5 4 32 32 H 1.08994 * 109.46839 * 351.25423 * 6 5 4 33 33 H 1.09003 * 109.47129 * 111.25253 * 6 5 4 34 34 H 1.00896 * 111.00582 * 12.56225 * 7 5 4 35 35 H 1.08996 * 109.46981 * 60.00478 * 8 7 5 36 36 H 1.08994 * 109.47146 * 300.00177 * 8 7 5 37 37 H 1.07993 * 119.88074 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.12446 * 180.29908 * 11 10 9 39 39 H 0.96996 * 120.00202 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.12892 * 179.97438 * 21 12 11 41 41 H 1.08008 * 119.87512 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1210 0.7651 6 6 1.3591 -2.1564 1.4716 7 7 3.4966 -0.7896 1.4434 8 6 4.0494 -1.9645 2.1304 9 6 5.3385 -1.5867 2.8135 10 6 5.3143 -1.1214 4.1192 11 6 6.4860 -0.7792 4.7550 12 6 7.7108 -0.8977 4.0726 13 6 8.9210 -0.5495 4.7158 14 1 8.9861 -0.5739 5.7936 15 6 10.0344 -0.1735 3.9559 16 7 9.8817 0.1947 2.7099 17 14 11.7384 -0.1969 4.7208 18 1 12.0601 -1.5751 5.1706 19 1 12.7387 0.2421 3.7148 20 1 11.7710 0.7242 5.8852 21 6 7.7227 -1.3651 2.7454 22 6 6.5389 -1.7015 2.1295 23 1 -0.3634 0.0773 1.0247 24 1 -0.3634 0.8488 -0.5794 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1824 1.3083 -0.4454 27 1 1.5812 2.0742 -0.5794 28 1 2.2773 1.7414 1.0247 29 1 3.1716 -0.8753 -1.2681 30 1 1.6115 -1.8591 -1.2678 31 1 0.7312 -1.6576 2.2099 32 1 0.7285 -2.6592 0.7384 33 1 1.9927 -2.8902 1.9699 34 1 4.1653 -0.4020 0.7949 35 1 4.2409 -2.7537 1.4033 36 1 3.3357 -2.3203 2.8733 37 1 4.3731 -1.0312 4.6409 38 1 6.4654 -0.4215 5.7738 39 1 10.6534 0.4550 2.1830 40 1 8.6571 -1.4595 2.2122 41 1 6.5455 -2.0610 1.1110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702006306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:00 Heat of formation + Delta-G solvation = 15.116195 kcal Electronic energy + Delta-G solvation = -18859.412356 eV Core-core repulsion = 16124.276267 eV Total energy + Delta-G solvation = -2735.136089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.40429 -39.33789 -36.13792 -34.71593 -31.86758 -31.12796 -30.42400 -29.07466 -27.78259 -27.51135 -24.79557 -22.87010 -21.84280 -21.22467 -19.21506 -19.05364 -17.32705 -16.80141 -16.36746 -15.92431 -15.62865 -15.27024 -14.83443 -14.64779 -14.25815 -14.24106 -13.80942 -13.66810 -13.48533 -13.16687 -13.07440 -12.98798 -12.97467 -12.79474 -12.61669 -12.48979 -12.38511 -11.97282 -11.88900 -11.34917 -11.32161 -11.12545 -10.98985 -10.38801 -9.37284 -9.22585 -8.91822 -8.63145 -6.32840 0.95289 1.16660 1.37439 1.48524 1.53196 2.20741 2.65699 2.82744 3.33669 3.76887 3.80064 3.88626 3.92684 4.24949 4.31958 4.38126 4.57143 4.61023 4.68820 4.75020 4.83497 4.84647 4.88564 4.93043 4.97582 5.04847 5.08099 5.10796 5.16668 5.20077 5.26367 5.36171 5.38807 5.48697 5.52356 5.71974 5.96859 6.11040 6.22467 6.30655 6.40882 6.48877 6.71272 6.95130 7.05241 8.33457 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003906 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.683417 B = 7167.274350 C = 7424.790483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.208 4.208 5 C 0.047 3.953 6 C -0.116 4.116 7 N -0.654 5.654 8 C 0.133 3.867 9 C -0.202 4.202 10 C -0.072 4.072 11 C -0.245 4.245 12 C 0.080 3.920 13 C -0.505 4.505 14 H 0.074 0.926 15 C 0.036 3.964 16 N -0.826 5.826 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.260 1.260 21 C -0.190 4.190 22 C -0.098 4.098 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.336 0.664 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.287 0.713 40 H 0.099 0.901 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 -2.231 -6.172 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.166 4.166 4 C -0.247 4.247 5 C -0.045 4.045 6 C -0.173 4.173 7 N -0.282 5.282 8 C 0.006 3.994 9 C -0.203 4.203 10 C -0.090 4.090 11 C -0.265 4.265 12 C 0.078 3.922 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.210 4.210 22 C -0.117 4.117 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.046 0.954 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.606 -1.896 -5.792 14.908 hybrid contribution 1.546 -0.185 -0.517 1.641 sum -12.060 -2.081 -6.310 13.769 Atomic orbital electron populations 1.21311 0.90476 1.02544 1.02116 1.21892 0.95728 0.91171 1.03102 1.21218 0.99378 0.94491 1.01512 1.24001 1.02614 1.02451 0.95682 1.21946 0.93089 0.99366 0.90104 1.21459 0.98552 0.96688 1.00599 1.60330 1.05060 1.30096 1.32747 1.20529 0.92340 0.90422 0.96134 1.19364 0.93819 1.11766 0.95360 1.20639 0.96416 0.97370 0.94606 1.21177 0.92978 1.11911 1.00406 1.17954 0.92947 0.88674 0.92632 1.19831 0.96329 1.42464 0.94814 0.90801 1.26751 1.04931 0.91266 0.94958 1.69879 1.34087 1.31153 1.10042 0.85262 0.75659 0.79860 0.78970 1.18497 1.19112 1.18394 1.21240 0.97053 1.05628 0.97037 1.20764 0.92854 1.00095 0.97991 0.92123 0.91448 0.91551 0.93771 0.91308 0.93033 0.90039 0.87618 0.91554 0.90413 0.91819 0.84531 0.95397 0.90108 0.86994 0.88785 0.90197 0.88332 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 8.88 71.98 0.64 -1.19 16 2 C -0.12 -2.62 2.70 -52.18 -0.14 -2.76 16 3 C -0.11 -2.58 9.16 71.98 0.66 -1.92 16 4 C -0.21 -4.63 9.17 30.60 0.28 -4.35 16 5 C 0.05 1.18 2.89 3.53 0.01 1.19 16 6 C -0.12 -2.44 8.50 71.98 0.61 -1.82 16 7 N -0.65 -20.61 6.23 -474.13 -2.95 -23.56 16 8 C 0.13 4.46 4.81 85.56 0.41 4.87 16 9 C -0.20 -8.58 5.42 -19.67 -0.11 -8.68 16 10 C -0.07 -3.22 9.67 22.22 0.21 -3.00 16 11 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 12 C 0.08 4.47 5.58 -21.29 -0.12 4.35 16 13 C -0.50 -28.10 9.05 23.46 0.21 -27.88 16 14 H 0.07 3.97 7.91 -2.91 -0.02 3.94 16 15 C 0.04 1.84 5.14 85.26 0.44 2.28 16 16 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 17 Si 0.98 38.98 29.59 68.60 2.03 41.01 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 C -0.19 -10.24 8.70 22.73 0.20 -10.05 16 22 C -0.10 -4.59 9.67 22.22 0.21 -4.37 16 23 H 0.06 1.04 8.03 -2.39 -0.02 1.02 16 24 H 0.07 1.02 7.92 -2.38 -0.02 1.00 16 25 H 0.07 0.97 7.77 -2.39 -0.02 0.95 16 26 H 0.04 1.11 7.69 -2.39 -0.02 1.10 16 27 H 0.07 1.36 7.92 -2.38 -0.02 1.34 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.95 8.00 -2.38 -0.02 1.93 16 30 H 0.11 1.99 7.96 -2.39 -0.02 1.97 16 31 H 0.07 1.36 8.03 -2.39 -0.02 1.34 16 32 H 0.08 1.31 7.77 -2.39 -0.02 1.29 16 33 H 0.06 1.41 5.61 -2.39 -0.01 1.40 16 34 H 0.34 11.27 8.08 -89.70 -0.72 10.55 16 35 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 36 H 0.08 2.51 6.29 -2.39 -0.02 2.50 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.09 4.56 8.06 -2.91 -0.02 4.54 16 39 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 40 H 0.10 5.57 6.15 -2.91 -0.02 5.55 16 41 H 0.10 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -58.98 331.04 3.34 -55.64 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.28 Total: 36.47 kcal Atomic # 6 Polarization: -69.35 SS G_CDS: 3.75 Total: -65.60 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -2.71 Total: -67.52 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -58.98 3.34 -55.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702006306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.758 kcal (2) G-P(sol) polarization free energy of solvation -58.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds