Wall clock time and date at job start Mon Mar 30 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38313 * 120.05142 * 2 1 4 4 C 1.37809 * 119.94801 * 180.36526 * 3 2 1 5 5 C 1.39622 * 120.42166 * 359.55831 * 4 3 2 6 6 C 1.38378 * 119.38627 * 0.20006 * 5 4 3 7 7 C 1.38051 * 120.05595 * 180.02562 * 2 1 3 8 8 C 1.50805 * 122.01463 * 180.29134 * 6 5 4 9 9 C 1.53043 * 109.64769 * 344.42434 * 8 6 5 10 10 C 1.53378 * 107.92673 * 47.31567 * 9 8 6 11 11 N 1.39409 * 117.64934 * 179.97438 * 5 4 3 12 12 C 1.46900 * 110.99898 * 285.80706 * 11 5 4 13 13 H 1.08997 * 109.47011 * 87.34202 * 12 11 5 14 14 C 1.52999 * 109.46975 * 327.34222 * 12 11 5 15 15 C 1.52997 * 109.46955 * 207.33946 * 12 11 5 16 16 C 1.50698 * 109.47533 * 294.29221 * 15 12 11 17 17 H 1.07999 * 119.99426 * 355.18618 * 16 15 12 18 18 C 1.37871 * 120.00171 * 175.19030 * 16 15 12 19 19 N 1.31513 * 120.00394 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46983 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47346 * 119.99418 * 20 18 16 23 23 H 1.48494 * 109.47240 * 239.99900 * 20 18 16 24 24 H 1.09004 * 109.46401 * 269.97674 * 1 2 3 25 25 H 1.08994 * 109.46998 * 29.97372 * 1 2 3 26 26 H 1.08999 * 109.47000 * 149.97553 * 1 2 3 27 27 H 1.07996 * 120.03137 * 0.15805 * 3 2 1 28 28 H 1.08000 * 119.79254 * 179.76790 * 4 3 2 29 29 H 1.07995 * 119.75800 * 0.02562 * 7 2 1 30 30 H 1.08995 * 109.43549 * 224.37099 * 8 6 5 31 31 H 1.08995 * 109.44261 * 104.48344 * 8 6 5 32 32 H 1.08998 * 109.77311 * 287.70267 * 9 8 6 33 33 H 1.09007 * 109.80908 * 166.94500 * 9 8 6 34 34 H 1.08996 * 109.60663 * 171.98485 * 10 9 8 35 35 H 1.08998 * 109.60532 * 51.48615 * 10 9 8 36 36 H 1.09005 * 109.46434 * 189.51629 * 14 12 11 37 37 H 1.08999 * 109.47207 * 309.51726 * 14 12 11 38 38 H 1.09000 * 109.47450 * 69.52353 * 14 12 11 39 39 H 1.09001 * 109.46908 * 54.29637 * 15 12 11 40 40 H 1.09005 * 109.46728 * 174.29253 * 15 12 11 41 41 H 0.96990 * 120.00421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1997 1.1972 0.0000 4 6 3.5778 1.1947 -0.0076 5 6 4.2826 -0.0105 -0.0061 6 6 3.5846 -1.2053 -0.0010 7 6 2.1985 -1.1949 -0.0005 8 6 4.2854 -2.5406 0.0074 9 6 5.7546 -2.3531 -0.3779 10 6 6.3119 -1.1825 0.4416 11 7 5.6752 0.0544 -0.0146 12 6 6.1758 0.4458 -1.3390 13 1 6.2105 1.5331 -1.4076 14 6 5.2427 -0.1038 -2.4198 15 6 7.5816 -0.1230 -1.5414 16 6 8.5306 0.5241 -0.5659 17 1 8.1852 1.3215 0.0753 18 6 9.8399 0.0983 -0.4922 19 7 10.2605 -0.8730 -1.2727 20 14 11.0161 0.8999 0.7175 21 1 10.3017 1.9591 1.4746 22 1 11.5286 -0.1245 1.6625 23 1 12.1530 1.5030 -0.0233 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6611 2.1333 0.0026 28 1 4.1161 2.1310 -0.0114 29 1 1.6555 -2.1284 -0.0014 30 1 3.8047 -3.2070 -0.7087 31 1 4.2245 -2.9760 1.0047 32 1 5.8311 -2.1280 -1.4416 33 1 6.3145 -3.2608 -0.1521 34 1 7.3899 -1.1144 0.2958 35 1 6.0923 -1.3381 1.4978 36 1 5.6984 0.0384 -3.3998 37 1 5.0743 -1.1670 -2.2482 38 1 4.2907 0.4257 -2.3816 39 1 7.5655 -1.1998 -1.3728 40 1 7.9127 0.0804 -2.5598 41 1 11.1814 -1.1729 -1.2206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709980701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:53 Heat of formation + Delta-G solvation = 28.869129 kcal Electronic energy + Delta-G solvation = -20185.519824 eV Core-core repulsion = 17450.980107 eV Total energy + Delta-G solvation = -2734.539717 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.59757 -37.48695 -34.04949 -32.97583 -31.77512 -30.41108 -29.41885 -27.86772 -26.10893 -24.29917 -23.02706 -22.34924 -21.49353 -19.57277 -18.59079 -16.44998 -16.32727 -15.63863 -15.17148 -14.57851 -14.24865 -13.82349 -13.66000 -13.47980 -13.17414 -12.91368 -12.66334 -12.23981 -12.04711 -11.93736 -11.85743 -11.60598 -11.45364 -11.26267 -10.95487 -10.88136 -10.63957 -10.47677 -10.35493 -9.82188 -9.69854 -9.14376 -9.06522 -8.56873 -8.37456 -8.35050 -7.12446 -6.02269 -4.02251 1.70726 1.73030 3.31391 3.39925 3.45640 4.01275 4.45754 4.57943 4.98697 5.08367 5.23517 5.31787 5.38517 5.42961 5.47107 5.60953 5.64340 5.74002 5.81695 5.88545 5.91620 6.01051 6.06643 6.11662 6.14170 6.25184 6.39554 6.43769 6.55699 6.63841 6.70387 6.77079 6.89508 6.92157 6.97564 7.11081 7.25380 7.52054 7.67882 7.90196 8.00198 8.19319 8.42340 9.04985 9.60585 11.08306 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.005663 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.634116 B = 4943.451333 C = 5162.852527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.139 3.861 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.076 4.076 9 C -0.166 4.166 10 C 0.040 3.960 11 N -0.484 5.484 12 C 0.095 3.905 13 H 0.071 0.929 14 C -0.187 4.187 15 C 0.009 3.991 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.139 0.861 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.019 0.981 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 -1.198 1.491 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.130 4.130 4 C -0.146 4.146 5 C 0.041 3.959 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.113 4.113 9 C -0.205 4.205 10 C -0.086 4.086 11 N -0.199 5.199 12 C -0.010 4.010 13 H 0.089 0.911 14 C -0.245 4.245 15 C -0.028 4.028 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.212 1.212 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.957 -0.922 1.764 15.089 hybrid contribution 0.468 -0.181 0.185 0.534 sum -14.490 -1.104 1.949 14.662 Atomic orbital electron populations 1.20667 0.91896 1.02026 1.01580 1.19633 0.95410 0.93252 1.03982 1.20751 0.93835 0.97071 1.01302 1.21044 0.93530 0.97448 1.02579 1.18691 0.89657 0.91957 0.95630 1.19964 0.93584 0.95002 1.04099 1.20747 0.93161 0.97076 1.01398 1.20520 0.96011 0.93530 1.01268 1.22508 0.94712 1.00747 1.02509 1.22661 1.04145 0.85016 0.96802 1.58694 1.01203 1.33233 1.26769 1.21923 0.96276 0.99747 0.83060 0.91122 1.22807 0.99687 1.01730 1.00269 1.19654 0.88345 0.97533 0.97269 1.21230 0.94240 1.18870 1.20055 0.91915 1.25005 0.98300 0.95188 0.95965 1.69964 1.16691 1.28056 1.38879 0.86577 0.81027 0.79498 0.81214 1.19620 1.21128 1.21217 0.91939 0.92107 0.92198 0.86699 0.86008 0.87012 0.91544 0.91329 0.89905 0.91389 0.84389 0.92462 0.92620 0.91828 0.93432 0.94406 0.96284 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.02 36.01 0.36 -0.69 16 2 C -0.12 -1.64 5.88 -104.66 -0.62 -2.25 16 3 C -0.11 -1.56 9.69 -39.71 -0.38 -1.95 16 4 C -0.13 -2.06 8.86 -39.22 -0.35 -2.41 16 5 C 0.14 2.46 3.43 -83.85 -0.29 2.17 16 6 C -0.12 -1.99 5.16 -104.38 -0.54 -2.53 16 7 C -0.11 -1.50 9.29 -39.51 -0.37 -1.86 16 8 C -0.08 -1.14 5.71 -27.81 -0.16 -1.30 16 9 C -0.17 -2.87 4.97 -26.51 -0.13 -3.00 16 10 C 0.04 0.80 5.17 -3.90 -0.02 0.78 16 11 N -0.48 -9.62 4.57 -163.77 -0.75 -10.36 16 12 C 0.09 1.95 2.52 -67.72 -0.17 1.78 16 13 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 14 C -0.19 -3.39 7.85 37.16 0.29 -3.10 16 15 C 0.01 0.22 3.81 -27.89 -0.11 0.11 16 16 C -0.51 -13.47 7.12 -34.44 -0.25 -13.71 16 17 H 0.06 1.70 7.75 -52.49 -0.41 1.29 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.53 3.93 -51.93 -0.20 1.32 16 33 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.14 3.21 4.29 -51.93 -0.22 2.99 16 35 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.06 1.14 4.26 -51.93 -0.22 0.92 16 38 H 0.05 0.82 6.79 -51.93 -0.35 0.47 16 39 H 0.04 0.94 4.79 -51.93 -0.25 0.69 16 40 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -28.00 309.11 -9.47 -37.47 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.27 Total: 3.46 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -2.82 Total: -26.53 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.01 Total: -35.28 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.00 -9.47 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709980701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.336 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds