Wall clock time and date at job start Mon Mar 30 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38313 * 120.05142 * 2 1 4 4 C 1.37809 * 119.94801 * 180.36526 * 3 2 1 5 5 C 1.39622 * 120.42166 * 359.55831 * 4 3 2 6 6 C 1.38378 * 119.38627 * 0.20006 * 5 4 3 7 7 C 1.38051 * 120.05595 * 180.02562 * 2 1 3 8 8 C 1.50805 * 122.01463 * 180.29134 * 6 5 4 9 9 C 1.53043 * 109.64769 * 344.42434 * 8 6 5 10 10 C 1.53378 * 107.92673 * 47.31567 * 9 8 6 11 11 N 1.39409 * 117.64934 * 179.97438 * 5 4 3 12 12 C 1.46900 * 110.99898 * 285.80706 * 11 5 4 13 13 H 1.08997 * 109.47011 * 87.34202 * 12 11 5 14 14 C 1.52999 * 109.46975 * 327.34222 * 12 11 5 15 15 C 1.52997 * 109.46955 * 207.33946 * 12 11 5 16 16 C 1.50698 * 109.47533 * 294.29221 * 15 12 11 17 17 H 1.07999 * 119.99426 * 355.18618 * 16 15 12 18 18 C 1.37871 * 120.00171 * 175.19030 * 16 15 12 19 19 N 1.31513 * 120.00394 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46983 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47346 * 119.99418 * 20 18 16 23 23 H 1.48494 * 109.47240 * 239.99900 * 20 18 16 24 24 H 1.09004 * 109.46401 * 269.97674 * 1 2 3 25 25 H 1.08994 * 109.46998 * 29.97372 * 1 2 3 26 26 H 1.08999 * 109.47000 * 149.97553 * 1 2 3 27 27 H 1.07996 * 120.03137 * 0.15805 * 3 2 1 28 28 H 1.08000 * 119.79254 * 179.76790 * 4 3 2 29 29 H 1.07995 * 119.75800 * 0.02562 * 7 2 1 30 30 H 1.08995 * 109.43549 * 224.37099 * 8 6 5 31 31 H 1.08995 * 109.44261 * 104.48344 * 8 6 5 32 32 H 1.08998 * 109.77311 * 287.70267 * 9 8 6 33 33 H 1.09007 * 109.80908 * 166.94500 * 9 8 6 34 34 H 1.08996 * 109.60663 * 171.98485 * 10 9 8 35 35 H 1.08998 * 109.60532 * 51.48615 * 10 9 8 36 36 H 1.09005 * 109.46434 * 189.51629 * 14 12 11 37 37 H 1.08999 * 109.47207 * 309.51726 * 14 12 11 38 38 H 1.09000 * 109.47450 * 69.52353 * 14 12 11 39 39 H 1.09001 * 109.46908 * 54.29637 * 15 12 11 40 40 H 1.09005 * 109.46728 * 174.29253 * 15 12 11 41 41 H 0.96990 * 120.00421 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1997 1.1972 0.0000 4 6 3.5778 1.1947 -0.0076 5 6 4.2826 -0.0105 -0.0061 6 6 3.5846 -1.2053 -0.0010 7 6 2.1985 -1.1949 -0.0005 8 6 4.2854 -2.5406 0.0074 9 6 5.7546 -2.3531 -0.3779 10 6 6.3119 -1.1825 0.4416 11 7 5.6752 0.0544 -0.0146 12 6 6.1758 0.4458 -1.3390 13 1 6.2105 1.5331 -1.4076 14 6 5.2427 -0.1038 -2.4198 15 6 7.5816 -0.1230 -1.5414 16 6 8.5306 0.5241 -0.5659 17 1 8.1852 1.3215 0.0753 18 6 9.8399 0.0983 -0.4922 19 7 10.2605 -0.8730 -1.2727 20 14 11.0161 0.8999 0.7175 21 1 10.3017 1.9591 1.4746 22 1 11.5286 -0.1245 1.6625 23 1 12.1530 1.5030 -0.0233 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6611 2.1333 0.0026 28 1 4.1161 2.1310 -0.0114 29 1 1.6555 -2.1284 -0.0014 30 1 3.8047 -3.2070 -0.7087 31 1 4.2245 -2.9760 1.0047 32 1 5.8311 -2.1280 -1.4416 33 1 6.3145 -3.2608 -0.1521 34 1 7.3899 -1.1144 0.2958 35 1 6.0923 -1.3381 1.4978 36 1 5.6984 0.0384 -3.3998 37 1 5.0743 -1.1670 -2.2482 38 1 4.2907 0.4257 -2.3816 39 1 7.5655 -1.1998 -1.3728 40 1 7.9127 0.0804 -2.5598 41 1 11.1814 -1.1729 -1.2206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709980701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:52 Heat of formation + Delta-G solvation = 14.709928 kcal Electronic energy + Delta-G solvation = -20186.133813 eV Core-core repulsion = 17450.980107 eV Total energy + Delta-G solvation = -2735.153706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95746 -38.77788 -35.57938 -34.66998 -33.18381 -31.81842 -30.70570 -29.58760 -27.34996 -25.69673 -24.85014 -23.63119 -22.75645 -21.08230 -19.98737 -18.42562 -17.82564 -17.00237 -16.49462 -16.39904 -15.56515 -15.15183 -14.97249 -14.81892 -14.32678 -14.21657 -13.86029 -13.79099 -13.68937 -13.33441 -13.10670 -13.03882 -13.02179 -12.80275 -12.58431 -12.38090 -12.09894 -11.94234 -11.81036 -11.53023 -11.25161 -11.10624 -10.83906 -10.51877 -9.83900 -9.51839 -8.48176 -8.14488 -6.19861 0.54270 0.56979 1.39453 1.42164 1.54113 2.44288 2.83172 3.11790 3.23138 3.85600 3.97774 4.07484 4.12651 4.19653 4.25815 4.31296 4.46248 4.49394 4.59072 4.62558 4.71820 4.84195 4.91204 4.93726 4.96115 4.99522 5.03342 5.08430 5.15543 5.25181 5.28216 5.37448 5.44282 5.53444 5.57789 5.68001 5.75388 5.80924 5.87153 6.12228 6.28787 6.38929 6.81909 6.92309 7.45841 8.96460 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.005663 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.634116 B = 4943.451333 C = 5162.852527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.114 4.114 3 C -0.112 4.112 4 C -0.140 4.140 5 C 0.107 3.893 6 C -0.131 4.131 7 C -0.109 4.109 8 C -0.070 4.070 9 C -0.161 4.161 10 C 0.045 3.955 11 N -0.497 5.497 12 C 0.104 3.896 13 H 0.057 0.943 14 C -0.173 4.173 15 C 0.018 3.982 16 C -0.509 4.509 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.950 3.050 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.282 1.282 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.029 0.971 40 H -0.009 1.009 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 -1.473 2.158 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.130 4.130 4 C -0.160 4.160 5 C 0.010 3.990 6 C -0.134 4.134 7 C -0.127 4.127 8 C -0.107 4.107 9 C -0.199 4.199 10 C -0.082 4.082 11 N -0.213 5.213 12 C -0.001 4.001 13 H 0.075 0.925 14 C -0.231 4.231 15 C -0.019 4.019 16 C -0.547 4.547 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.570 5.570 20 Si 0.777 3.223 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.208 1.208 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.157 0.843 28 H 0.130 0.870 29 H 0.156 0.844 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.010 0.990 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.653 -1.191 2.436 17.860 hybrid contribution 1.194 -0.077 -0.008 1.197 sum -16.458 -1.268 2.428 16.685 Atomic orbital electron populations 1.20738 0.89096 1.03403 1.02797 1.20091 0.97421 0.92556 1.01423 1.21045 0.92888 0.98721 1.00374 1.21118 0.94730 0.96711 1.03396 1.18774 0.88384 0.93342 0.98505 1.20132 0.94644 0.94625 1.03999 1.21055 0.92357 0.98645 1.00637 1.20506 0.93919 0.93680 1.02553 1.22398 0.96767 0.99700 1.01081 1.22418 1.01857 0.86481 0.97482 1.58626 1.03033 1.33464 1.26146 1.21629 0.94815 0.98672 0.85020 0.92533 1.22639 0.99410 1.01877 0.99157 1.19491 0.90397 0.96989 0.94978 1.21407 0.94930 1.18386 1.20022 0.92935 1.25712 0.99877 0.95726 0.97579 1.70065 1.17111 1.29371 1.40436 0.85611 0.78917 0.78630 0.79180 1.19397 1.20552 1.20792 0.90650 0.90853 0.90831 0.84289 0.86979 0.84430 0.89349 0.90043 0.91322 0.90915 0.88402 0.92176 0.92636 0.91464 0.92360 0.95303 0.99049 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 10.02 71.24 0.71 -0.89 16 2 C -0.11 -2.64 5.88 -19.89 -0.12 -2.76 16 3 C -0.11 -2.86 9.69 22.19 0.22 -2.64 16 4 C -0.14 -4.45 8.86 22.50 0.20 -4.25 16 5 C 0.11 3.72 3.43 38.30 0.13 3.86 16 6 C -0.13 -3.96 5.16 -19.71 -0.10 -4.06 16 7 C -0.11 -2.70 9.29 22.32 0.21 -2.49 16 8 C -0.07 -1.94 5.71 29.90 0.17 -1.77 16 9 C -0.16 -5.54 4.97 30.74 0.15 -5.39 16 10 C 0.04 1.82 5.17 86.52 0.45 2.27 16 11 N -0.50 -20.18 4.57 -672.04 -3.07 -23.26 16 12 C 0.10 4.43 2.52 44.91 0.11 4.54 16 13 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 14 C -0.17 -6.30 7.85 71.98 0.57 -5.74 16 15 C 0.02 0.94 3.81 29.85 0.11 1.05 16 16 C -0.51 -28.20 7.12 25.60 0.18 -28.02 16 17 H 0.05 2.96 7.75 -2.91 -0.02 2.93 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.93 -54.70 13.29 21.44 0.28 -54.41 16 20 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 26 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 28 H 0.11 3.68 8.06 -2.91 -0.02 3.65 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.55 3.93 -2.39 -0.01 2.54 16 33 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.10 4.78 4.29 -2.39 -0.01 4.77 16 35 H 0.06 2.34 8.11 -2.39 -0.02 2.32 16 36 H 0.05 1.98 8.09 -2.38 -0.02 1.96 16 37 H 0.07 2.40 4.26 -2.39 -0.01 2.39 16 38 H 0.06 1.98 6.79 -2.39 -0.02 1.96 16 39 H 0.03 1.51 4.79 -2.39 -0.01 1.50 16 40 H -0.01 -0.48 8.11 -2.38 -0.02 -0.50 16 41 H 0.26 14.58 8.31 -92.72 -0.77 13.81 16 Total: -1.00 -61.50 309.11 3.70 -57.81 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.01 Total: 18.66 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 3.46 Total: -45.33 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.79 Total: -77.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.50 3.70 -57.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709980701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.515 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds