Wall clock time and date at job start Mon Mar 30 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38310 * 120.05697 * 2 1 4 4 C 1.37804 * 119.95263 * 180.15799 * 3 2 1 5 5 C 1.39615 * 120.41786 * 0.04683 * 4 3 2 6 6 C 1.38380 * 119.39491 * 359.69885 * 5 4 3 7 7 C 1.38057 * 120.05108 * 180.02562 * 2 1 3 8 8 C 1.50802 * 122.00858 * 180.42367 * 6 5 4 9 9 C 1.53036 * 109.66472 * 344.27415 * 8 6 5 10 10 C 1.53381 * 107.98524 * 47.27622 * 9 8 6 11 11 N 1.39406 * 117.65214 * 179.26611 * 5 4 3 12 12 C 1.46898 * 110.99799 * 34.61347 * 11 5 4 13 13 H 1.09001 * 109.47298 * 304.55626 * 12 11 5 14 14 C 1.52996 * 109.47184 * 64.55956 * 12 11 5 15 15 C 1.53008 * 109.47053 * 184.55464 * 12 11 5 16 16 C 1.50703 * 109.46878 * 62.44956 * 15 12 11 17 17 H 1.08001 * 120.00003 * 355.23577 * 16 15 12 18 18 C 1.37872 * 120.00119 * 175.23311 * 16 15 12 19 19 N 1.31519 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47222 * 59.99977 * 20 18 16 22 22 H 1.48500 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46795 * 300.00186 * 20 18 16 24 24 H 1.08996 * 109.47172 * 269.98021 * 1 2 3 25 25 H 1.09002 * 109.47092 * 29.97980 * 1 2 3 26 26 H 1.09001 * 109.47095 * 149.97742 * 1 2 3 27 27 H 1.08006 * 120.02093 * 0.18302 * 3 2 1 28 28 H 1.08003 * 119.79354 * 180.02562 * 4 3 2 29 29 H 1.07996 * 119.75686 * 359.94153 * 7 2 1 30 30 H 1.08998 * 109.43822 * 224.21396 * 8 6 5 31 31 H 1.09008 * 109.40567 * 104.31139 * 8 6 5 32 32 H 1.08990 * 109.77269 * 166.91634 * 9 8 6 33 33 H 1.09009 * 109.76814 * 287.64611 * 9 8 6 34 34 H 1.08996 * 109.60306 * 51.56160 * 10 9 8 35 35 H 1.09000 * 109.60971 * 172.05971 * 10 9 8 36 36 H 1.08999 * 109.47278 * 185.92376 * 14 12 11 37 37 H 1.09004 * 109.46909 * 305.92456 * 14 12 11 38 38 H 1.08998 * 109.47281 * 65.91956 * 14 12 11 39 39 H 1.09002 * 109.47080 * 182.44578 * 15 12 11 40 40 H 1.08994 * 109.47438 * 302.45114 * 15 12 11 41 41 H 0.96996 * 120.00383 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1971 0.0000 4 6 3.5777 1.1946 -0.0033 5 6 4.2824 -0.0107 -0.0076 6 6 3.5845 -1.2055 -0.0022 7 6 2.1983 -1.1950 -0.0005 8 6 4.2855 -2.5407 0.0030 9 6 5.7528 -2.3535 -0.3892 10 6 6.3152 -1.1823 0.4261 11 7 5.6748 0.0541 -0.0266 12 6 6.1586 1.2093 0.7411 13 1 5.6966 2.1193 0.3581 14 6 5.7908 1.0320 2.2155 15 6 7.6790 1.3124 0.6036 16 6 8.0380 1.5471 -0.8411 17 1 7.2670 1.5392 -1.5973 18 6 9.3508 1.7720 -1.1975 19 7 10.2898 1.7813 -0.2767 20 14 9.7957 2.0636 -2.9881 21 1 9.0778 3.2639 -3.4874 22 1 11.2605 2.2778 -3.1056 23 1 9.4026 0.8804 -3.7948 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6610 2.1332 0.0030 28 1 4.1161 2.1309 -0.0029 29 1 1.6552 -2.1285 0.0000 30 1 3.8014 -3.2073 -0.7108 31 1 4.2294 -2.9753 1.0011 32 1 6.3131 -3.2611 -0.1652 33 1 5.8243 -2.1295 -1.4536 34 1 6.1022 -1.3373 1.4837 35 1 7.3923 -1.1142 0.2735 36 1 6.0553 1.9343 2.7670 37 1 4.7191 0.8534 2.3037 38 1 6.3357 0.1822 2.6263 39 1 8.0429 2.1433 1.2080 40 1 8.1385 0.3853 0.9462 41 1 11.2134 1.9391 -0.5274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709980702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:55 Heat of formation + Delta-G solvation = 15.046532 kcal Electronic energy + Delta-G solvation = -19899.858024 eV Core-core repulsion = 17164.718914 eV Total energy + Delta-G solvation = -2735.139110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39689 -37.27325 -34.80139 -32.85313 -31.73296 -30.44599 -29.32901 -27.44014 -26.53149 -24.34257 -23.07936 -22.76162 -21.63286 -19.33682 -18.51151 -16.54752 -16.23940 -15.77139 -15.11134 -14.52221 -14.28711 -14.01082 -13.53485 -13.43604 -13.13037 -13.04936 -12.86771 -12.63469 -12.08478 -11.98189 -11.78234 -11.69694 -11.51068 -11.21969 -11.05235 -10.77493 -10.66570 -10.48876 -10.46826 -10.18596 -9.76214 -9.35930 -9.14454 -8.93022 -8.39580 -8.31816 -6.93851 -5.95620 -3.95008 1.72984 1.79786 3.37714 3.41466 3.45612 3.99782 4.43239 4.52002 4.91759 5.09164 5.20087 5.27595 5.36070 5.38882 5.41744 5.59554 5.67763 5.68356 5.75436 5.77529 5.87213 5.91145 5.95223 6.00111 6.04425 6.11911 6.31929 6.33162 6.40749 6.47842 6.59921 6.65759 6.73040 6.76801 6.84636 6.95825 7.24371 7.48932 7.65043 7.86223 8.00672 8.05097 8.47829 9.11913 9.68222 11.15914 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.005753 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.461498 B = 4865.475645 C = 5018.940206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.141 4.141 3 C -0.094 4.094 4 C -0.164 4.164 5 C 0.150 3.850 6 C -0.139 4.139 7 C -0.091 4.091 8 C -0.072 4.072 9 C -0.123 4.123 10 C 0.058 3.942 11 N -0.465 5.465 12 C 0.086 3.914 13 H 0.082 0.918 14 C -0.181 4.181 15 C 0.026 3.974 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -6.097 2.881 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.142 4.142 3 C -0.113 4.113 4 C -0.185 4.185 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.161 4.161 10 C -0.068 4.068 11 N -0.175 5.175 12 C -0.020 4.020 13 H 0.099 0.901 14 C -0.239 4.239 15 C -0.011 4.011 16 C -0.539 4.539 17 H 0.079 0.921 18 C -0.146 4.146 19 N -0.542 5.542 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.470 -6.004 2.439 15.855 hybrid contribution 0.178 0.137 -0.398 0.458 sum -14.292 -5.867 2.040 15.584 Atomic orbital electron populations 1.20625 0.91970 1.01909 1.01384 1.19557 0.95364 0.93229 1.06063 1.20727 0.93736 0.97064 0.99775 1.21214 0.94048 0.97399 1.05853 1.18847 0.89068 0.92731 0.94516 1.19450 0.93422 0.93830 1.07583 1.20684 0.92944 0.97042 1.00314 1.20459 0.95563 0.93805 1.01126 1.21724 0.94812 0.98041 1.01516 1.22165 1.01088 0.87259 0.96301 1.57949 1.01821 1.05559 1.52129 1.22142 1.00324 0.91019 0.88475 0.90054 1.22495 1.00394 1.02101 0.98922 1.19293 0.86399 0.97575 0.97844 1.21140 0.92670 1.47086 0.92956 0.92058 1.24994 0.96709 0.95816 0.97053 1.69947 1.00730 1.50807 1.32697 0.86684 0.76939 0.78751 0.85760 1.20397 1.21558 1.20343 0.92174 0.92219 0.92326 0.86765 0.85459 0.86977 0.91347 0.91568 0.91135 0.90679 0.94265 0.88033 0.92121 0.93429 0.92814 0.95439 0.96328 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.14 -1.92 5.88 -104.66 -0.62 -2.54 16 3 C -0.09 -1.37 9.69 -39.71 -0.38 -1.76 16 4 C -0.16 -2.76 8.26 -39.23 -0.32 -3.09 16 5 C 0.15 2.67 4.81 -83.85 -0.40 2.27 16 6 C -0.14 -2.20 5.74 -104.38 -0.60 -2.80 16 7 C -0.09 -1.29 9.29 -39.51 -0.37 -1.65 16 8 C -0.07 -0.99 5.81 -27.81 -0.16 -1.16 16 9 C -0.12 -1.87 6.19 -26.52 -0.16 -2.03 16 10 C 0.06 1.04 4.70 -3.89 -0.02 1.02 16 11 N -0.47 -9.09 4.12 -163.76 -0.67 -9.76 16 12 C 0.09 1.73 1.92 -67.71 -0.13 1.60 16 13 H 0.08 1.67 5.82 -51.93 -0.30 1.37 16 14 C -0.18 -3.15 8.47 37.16 0.31 -2.83 16 15 C 0.03 0.64 4.12 -27.88 -0.11 0.52 16 16 C -0.50 -13.75 8.79 -34.44 -0.30 -14.05 16 17 H 0.06 1.71 7.68 -52.49 -0.40 1.31 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 26 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 28 H 0.13 2.17 5.80 -52.48 -0.30 1.86 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.04 0.67 6.41 -51.93 -0.33 0.34 16 35 H 0.10 2.07 6.28 -51.93 -0.33 1.74 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.79 6.63 -51.93 -0.34 0.44 16 38 H 0.05 0.93 6.75 -51.93 -0.35 0.57 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.02 0.48 6.26 -51.93 -0.33 0.15 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -29.45 316.63 -9.66 -39.11 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.47 Total: 0.66 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -3.01 Total: -25.75 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.06 Total: -35.66 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.45 -9.66 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709980702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.161 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds