Wall clock time and date at job start Mon Mar 30 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38310 * 120.05697 * 2 1 4 4 C 1.37804 * 119.95263 * 180.15799 * 3 2 1 5 5 C 1.39615 * 120.41786 * 0.04683 * 4 3 2 6 6 C 1.38380 * 119.39491 * 359.69885 * 5 4 3 7 7 C 1.38057 * 120.05108 * 180.02562 * 2 1 3 8 8 C 1.50802 * 122.00858 * 180.42367 * 6 5 4 9 9 C 1.53036 * 109.66472 * 344.27415 * 8 6 5 10 10 C 1.53381 * 107.98524 * 47.27622 * 9 8 6 11 11 N 1.39406 * 117.65214 * 179.26611 * 5 4 3 12 12 C 1.46898 * 110.99799 * 34.61347 * 11 5 4 13 13 H 1.09001 * 109.47298 * 304.55626 * 12 11 5 14 14 C 1.52996 * 109.47184 * 64.55956 * 12 11 5 15 15 C 1.53008 * 109.47053 * 184.55464 * 12 11 5 16 16 C 1.50703 * 109.46878 * 62.44956 * 15 12 11 17 17 H 1.08001 * 120.00003 * 355.23577 * 16 15 12 18 18 C 1.37872 * 120.00119 * 175.23311 * 16 15 12 19 19 N 1.31519 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00382 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47222 * 59.99977 * 20 18 16 22 22 H 1.48500 * 109.47310 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46795 * 300.00186 * 20 18 16 24 24 H 1.08996 * 109.47172 * 269.98021 * 1 2 3 25 25 H 1.09002 * 109.47092 * 29.97980 * 1 2 3 26 26 H 1.09001 * 109.47095 * 149.97742 * 1 2 3 27 27 H 1.08006 * 120.02093 * 0.18302 * 3 2 1 28 28 H 1.08003 * 119.79354 * 180.02562 * 4 3 2 29 29 H 1.07996 * 119.75686 * 359.94153 * 7 2 1 30 30 H 1.08998 * 109.43822 * 224.21396 * 8 6 5 31 31 H 1.09008 * 109.40567 * 104.31139 * 8 6 5 32 32 H 1.08990 * 109.77269 * 166.91634 * 9 8 6 33 33 H 1.09009 * 109.76814 * 287.64611 * 9 8 6 34 34 H 1.08996 * 109.60306 * 51.56160 * 10 9 8 35 35 H 1.09000 * 109.60971 * 172.05971 * 10 9 8 36 36 H 1.08999 * 109.47278 * 185.92376 * 14 12 11 37 37 H 1.09004 * 109.46909 * 305.92456 * 14 12 11 38 38 H 1.08998 * 109.47281 * 65.91956 * 14 12 11 39 39 H 1.09002 * 109.47080 * 182.44578 * 15 12 11 40 40 H 1.08994 * 109.47438 * 302.45114 * 15 12 11 41 41 H 0.96996 * 120.00383 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1971 0.0000 4 6 3.5777 1.1946 -0.0033 5 6 4.2824 -0.0107 -0.0076 6 6 3.5845 -1.2055 -0.0022 7 6 2.1983 -1.1950 -0.0005 8 6 4.2855 -2.5407 0.0030 9 6 5.7528 -2.3535 -0.3892 10 6 6.3152 -1.1823 0.4261 11 7 5.6748 0.0541 -0.0266 12 6 6.1586 1.2093 0.7411 13 1 5.6966 2.1193 0.3581 14 6 5.7908 1.0320 2.2155 15 6 7.6790 1.3124 0.6036 16 6 8.0380 1.5471 -0.8411 17 1 7.2670 1.5392 -1.5973 18 6 9.3508 1.7720 -1.1975 19 7 10.2898 1.7813 -0.2767 20 14 9.7957 2.0636 -2.9881 21 1 9.0778 3.2639 -3.4874 22 1 11.2605 2.2778 -3.1056 23 1 9.4026 0.8804 -3.7948 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6610 2.1332 0.0030 28 1 4.1161 2.1309 -0.0029 29 1 1.6552 -2.1285 0.0000 30 1 3.8014 -3.2073 -0.7108 31 1 4.2294 -2.9753 1.0011 32 1 6.3131 -3.2611 -0.1652 33 1 5.8243 -2.1295 -1.4536 34 1 6.1022 -1.3373 1.4837 35 1 7.3923 -1.1142 0.2735 36 1 6.0553 1.9343 2.7670 37 1 4.7191 0.8534 2.3037 38 1 6.3357 0.1822 2.6263 39 1 8.0429 2.1433 1.2080 40 1 8.1385 0.3853 0.9462 41 1 11.2134 1.9391 -0.5274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709980702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:54 Heat of formation + Delta-G solvation = -0.000519 kcal Electronic energy + Delta-G solvation = -19900.510513 eV Core-core repulsion = 17164.718914 eV Total energy + Delta-G solvation = -2735.791599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69197 -38.56409 -36.17002 -34.77779 -33.03801 -31.82736 -30.59982 -29.27572 -27.63788 -25.75581 -24.82586 -24.08372 -22.87385 -20.80008 -19.77882 -18.39487 -17.90203 -17.09995 -16.48018 -16.35432 -15.56608 -15.29731 -14.81178 -14.58929 -14.49588 -14.27053 -14.23114 -13.99192 -13.61266 -13.40348 -13.19528 -13.01316 -12.87073 -12.75882 -12.64152 -12.41336 -12.26718 -11.95139 -11.82897 -11.59725 -11.28680 -11.16841 -11.04343 -10.50553 -10.34659 -9.53914 -8.25062 -8.14114 -6.20434 0.57082 0.61934 1.39234 1.40982 1.49042 2.43546 2.77671 3.09281 3.21481 3.78308 3.95945 3.96392 4.11130 4.20540 4.24257 4.37513 4.44387 4.46135 4.48981 4.54761 4.68765 4.78017 4.85871 4.91171 4.94354 4.99863 5.01177 5.06658 5.13464 5.15535 5.25732 5.30381 5.33910 5.42936 5.54696 5.58992 5.68964 5.83722 5.85363 6.11538 6.28261 6.42929 6.66590 6.92627 7.46254 8.96798 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024763 B = 0.005753 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.461498 B = 4865.475645 C = 5018.940206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.135 4.135 3 C -0.100 4.100 4 C -0.181 4.181 5 C 0.119 3.881 6 C -0.146 4.146 7 C -0.094 4.094 8 C -0.067 4.067 9 C -0.118 4.118 10 C 0.059 3.941 11 N -0.486 5.486 12 C 0.095 3.905 13 H 0.073 0.927 14 C -0.167 4.167 15 C 0.034 3.966 16 C -0.508 4.508 17 H 0.053 0.947 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.134 0.866 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.648 -7.335 2.415 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.136 4.136 3 C -0.119 4.119 4 C -0.202 4.202 5 C 0.019 3.981 6 C -0.150 4.150 7 C -0.112 4.112 8 C -0.104 4.104 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.197 5.197 12 C -0.010 4.010 13 H 0.091 0.909 14 C -0.225 4.225 15 C -0.003 4.003 16 C -0.546 4.546 17 H 0.071 0.929 18 C -0.194 4.194 19 N -0.576 5.576 20 Si 0.779 3.221 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.152 0.848 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.200 -7.245 1.969 18.767 hybrid contribution 0.919 0.522 -0.232 1.082 sum -16.281 -6.722 1.737 17.700 Atomic orbital electron populations 1.20689 0.89234 1.03191 1.02620 1.20021 0.97357 0.92603 1.03624 1.20998 0.92873 0.98688 0.99309 1.21248 0.95219 0.96691 1.07078 1.18971 0.88006 0.94086 0.97006 1.19782 0.94454 0.93897 1.06866 1.21041 0.92285 0.98544 0.99368 1.20495 0.93943 0.93275 1.02723 1.21697 0.96542 0.97558 0.99737 1.22092 0.99066 0.88213 0.97310 1.57915 1.03488 1.05347 1.52903 1.21814 0.96896 0.91799 0.90540 0.90913 1.22329 1.00993 1.02313 0.96913 1.19110 0.89759 0.95458 0.95952 1.21389 0.92612 1.46485 0.94096 0.92894 1.25779 0.96713 0.95728 1.01193 1.70065 1.01015 1.51899 1.34656 0.85679 0.76844 0.78771 0.80774 1.19710 1.20910 1.19914 0.90821 0.91281 0.90817 0.84792 0.86910 0.84054 0.89035 0.89822 0.88856 0.92578 0.93603 0.91634 0.91588 0.92239 0.92894 0.98079 0.97964 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.01 71.23 0.71 -0.94 16 2 C -0.13 -3.24 5.88 -19.89 -0.12 -3.35 16 3 C -0.10 -2.73 9.69 22.18 0.22 -2.52 16 4 C -0.18 -6.07 8.26 22.50 0.19 -5.89 16 5 C 0.12 4.21 4.81 38.30 0.18 4.40 16 6 C -0.15 -4.33 5.74 -19.71 -0.11 -4.45 16 7 C -0.09 -2.32 9.29 22.32 0.21 -2.12 16 8 C -0.07 -1.67 5.81 29.89 0.17 -1.50 16 9 C -0.12 -3.48 6.19 30.73 0.19 -3.29 16 10 C 0.06 2.18 4.70 86.52 0.41 2.59 16 11 N -0.49 -19.49 4.12 -672.01 -2.77 -22.26 16 12 C 0.10 4.02 1.92 44.92 0.09 4.11 16 13 H 0.07 3.15 5.82 -2.39 -0.01 3.14 16 14 C -0.17 -5.92 8.47 71.98 0.61 -5.31 16 15 C 0.03 1.79 4.12 29.85 0.12 1.91 16 16 C -0.51 -29.00 8.79 25.60 0.23 -28.77 16 17 H 0.05 3.06 7.68 -2.91 -0.02 3.03 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 20 Si 0.95 45.72 29.54 68.60 2.03 47.75 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.02 8.09 -2.39 -0.02 1.01 16 26 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 27 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.11 3.98 5.80 -2.91 -0.02 3.97 16 29 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.05 1.58 6.41 -2.39 -0.02 1.56 16 35 H 0.07 2.83 6.28 -2.39 -0.02 2.82 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 1.96 6.63 -2.38 -0.02 1.94 16 38 H 0.05 1.86 6.75 -2.39 -0.02 1.84 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.00 0.12 6.26 -2.39 -0.01 0.10 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -65.03 316.63 4.09 -60.94 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.00 Total: 14.66 kcal Atomic # 6 Polarization: -48.05 SS G_CDS: 3.55 Total: -44.50 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.48 Total: -78.85 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.03 4.09 -60.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709980702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.941 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds