Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00159 * 2 1 4 4 H 1.48494 * 109.47427 * 270.00680 * 3 2 1 5 5 H 1.48509 * 109.46668 * 30.00638 * 3 2 1 6 6 H 1.48500 * 109.46980 * 150.00181 * 3 2 1 7 7 C 1.37879 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00455 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99776 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.38534 * 119.99891 * 269.99861 * 10 9 7 12 12 C 1.39665 * 120.53515 * 188.79499 * 11 10 9 13 13 C 1.38072 * 118.33836 * 180.02562 * 12 11 10 14 14 C 1.50695 * 120.40420 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49601 * 343.74373 * 14 13 12 16 16 C 1.53006 * 117.49493 * 275.08676 * 14 13 12 17 17 N 1.32578 * 119.19790 * 359.97438 * 13 12 11 18 18 C 1.31758 * 121.01655 * 359.97438 * 17 13 12 19 19 N 1.31783 * 121.82919 * 359.72072 * 18 17 13 20 20 C 1.46500 * 119.99944 * 90.00436 * 10 9 7 21 21 C 1.52994 * 117.50138 * 55.83247 * 20 10 9 22 22 C 1.52992 * 117.50139 * 347.20599 * 20 10 9 23 23 H 0.97002 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47025 * 60.00705 * 9 7 2 25 25 H 1.09001 * 109.47265 * 300.00274 * 9 7 2 26 26 H 1.08004 * 120.82880 * 0.02562 * 12 11 10 27 27 H 1.08997 * 115.55388 * 129.41196 * 14 13 12 28 28 H 1.08999 * 117.49968 * 0.02562 * 15 14 13 29 29 H 1.09001 * 117.50110 * 145.02293 * 15 14 13 30 30 H 1.09003 * 117.49296 * 214.97533 * 16 14 13 31 31 H 1.08997 * 117.50277 * 359.97277 * 16 14 13 32 32 H 1.08000 * 119.08941 * 180.02562 * 18 17 13 33 33 H 1.09000 * 115.55906 * 201.51783 * 20 10 9 34 34 H 1.08999 * 117.49898 * 145.02372 * 21 20 10 35 35 H 1.08997 * 117.50028 * 359.97438 * 21 20 10 36 36 H 1.09000 * 117.49874 * 0.02562 * 22 20 10 37 37 H 1.09001 * 117.50213 * 214.98420 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6531 -4.1391 -1.2003 12 6 3.4130 -5.3108 -1.2204 13 6 3.8384 -5.7952 -2.4414 14 6 4.6613 -7.0554 -2.5172 15 6 5.3170 -7.5496 -1.2262 16 6 6.1740 -6.9236 -2.3293 17 7 3.5142 -5.1382 -3.5464 18 6 2.7949 -4.0355 -3.4943 19 7 2.3628 -3.5408 -2.3518 20 6 2.6790 -4.1694 1.2682 21 6 1.6261 -4.6660 2.2610 22 6 2.3921 -3.3716 2.5417 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.6615 -5.8252 -0.3038 27 1 4.3051 -7.8078 -3.2208 28 1 5.1528 -6.9635 -0.3220 29 1 5.3926 -8.6272 -1.0807 30 1 6.8130 -7.5897 -2.9091 31 1 6.5741 -5.9254 -2.1513 32 1 2.5484 -3.5254 -4.4138 33 1 3.6208 -4.7159 1.2181 34 1 1.8753 -5.5390 2.8642 35 1 0.5793 -4.5780 1.9704 36 1 1.8488 -2.4326 2.4357 37 1 3.1451 -3.3931 3.3295 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710119596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = 110.833361 kcal Electronic energy + Delta-G solvation = -19087.430051 eV Core-core repulsion = 16252.904227 eV Total energy + Delta-G solvation = -2834.525825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46140 -37.97079 -37.06706 -34.15310 -32.79267 -31.72326 -30.22592 -27.17593 -24.72933 -23.72277 -22.89335 -22.26327 -21.93273 -20.99434 -19.35615 -17.39698 -16.93196 -16.36871 -15.64855 -15.01812 -14.93931 -14.60747 -14.20761 -14.01408 -13.76657 -13.39098 -12.63667 -12.21524 -11.86357 -11.59841 -11.48931 -11.36594 -10.99399 -10.85109 -10.76927 -10.56601 -10.53293 -10.14748 -10.09151 -9.97061 -9.74639 -9.44800 -9.05543 -8.47034 -8.42594 -7.04845 -6.04612 -4.09928 1.60363 1.97145 3.29534 3.35837 3.37586 3.51781 3.74232 4.21638 4.32771 4.41980 4.59219 4.79816 4.88816 5.01916 5.17023 5.21199 5.26462 5.30678 5.33743 5.42275 5.52500 5.64574 5.76077 5.92047 5.96034 6.01889 6.03225 6.10488 6.25510 6.38602 6.68888 6.80581 7.03623 7.37109 7.56133 7.83796 8.08855 8.18768 8.23234 8.91155 9.00646 9.54062 11.01554 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.006192 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.655836 B = 4521.143433 C = 5206.733859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.252 3.748 10 N -0.547 5.547 11 C 0.451 3.549 12 C -0.302 4.302 13 C 0.220 3.780 14 C -0.102 4.102 15 C -0.173 4.173 16 C -0.161 4.161 17 N -0.579 5.579 18 C 0.333 3.667 19 N -0.554 5.554 20 C 0.087 3.913 21 C -0.201 4.201 22 C -0.174 4.174 23 H 0.263 0.737 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.188 0.812 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 -12.981 0.605 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.133 3.867 10 N -0.253 5.253 11 C 0.207 3.793 12 C -0.332 4.332 13 C 0.078 3.922 14 C -0.121 4.121 15 C -0.211 4.211 16 C -0.199 4.199 17 N -0.300 5.300 18 C 0.043 3.957 19 N -0.277 5.277 20 C -0.020 4.020 21 C -0.240 4.240 22 C -0.212 4.212 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.151 0.849 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.204 0.796 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.217 -12.273 -0.008 14.238 hybrid contribution 0.572 0.707 0.718 1.159 sum 7.789 -11.567 0.711 13.963 Atomic orbital electron populations 1.69919 1.05928 1.26963 1.50680 1.24887 0.94805 0.99023 0.95208 0.86542 0.79678 0.83240 0.78217 1.20584 1.21220 1.20046 1.21346 0.93204 0.90318 1.50541 0.92622 1.19363 0.87001 0.81972 0.98378 1.46589 1.44684 1.34427 0.99574 1.18491 0.86829 0.87011 0.87013 1.21862 1.10544 1.00830 0.99921 1.20165 0.91211 0.92624 0.88233 1.20712 0.94003 0.95975 1.01395 1.23066 1.03764 1.01076 0.93171 1.22939 0.92156 1.02608 1.02184 1.68048 1.19274 1.11095 1.31560 1.24596 0.87783 0.88135 0.95236 1.68170 1.27777 1.34005 0.97734 1.21383 0.97335 1.01912 0.81327 1.23418 0.98721 0.98162 1.03679 1.23398 1.03197 0.97311 0.97310 0.92754 0.93569 0.94918 0.84913 0.86189 0.88296 0.88226 0.88311 0.88733 0.79586 0.86689 0.88893 0.88620 0.86158 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 13.28 55.43 0.74 -25.18 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.12 8.96 -34.44 -0.31 -14.42 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.16 16 9 C 0.25 6.35 4.40 -5.19 -0.02 6.33 16 10 N -0.55 -11.66 2.91 -167.44 -0.49 -12.14 16 11 C 0.45 9.44 7.36 -154.79 -1.14 8.30 16 12 C -0.30 -5.26 8.58 -39.11 -0.34 -5.59 16 13 C 0.22 3.64 6.49 -82.33 -0.53 3.11 16 14 C -0.10 -1.28 6.24 -91.77 -0.57 -1.86 16 15 C -0.17 -1.74 9.83 -26.69 -0.26 -2.00 16 16 C -0.16 -1.72 10.24 -26.69 -0.27 -2.00 16 17 N -0.58 -10.42 10.37 -10.89 -0.11 -10.53 16 18 C 0.33 6.26 12.28 -92.20 -1.13 5.13 16 19 N -0.55 -12.23 9.37 -13.81 -0.13 -12.36 16 20 C 0.09 1.49 5.94 -67.94 -0.40 1.08 16 21 C -0.20 -3.02 10.03 -26.74 -0.27 -3.29 16 22 C -0.17 -2.88 9.72 -26.74 -0.26 -3.14 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 25 H 0.03 0.85 6.25 -51.93 -0.32 0.52 16 26 H 0.13 1.97 4.73 -52.48 -0.25 1.72 16 27 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.10 1.02 6.46 -51.93 -0.34 0.68 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.19 2.89 8.06 -52.49 -0.42 2.47 16 33 H 0.12 1.70 6.61 -51.93 -0.34 1.36 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.58 7.87 -51.93 -0.41 1.17 16 36 H 0.12 2.41 6.29 -51.93 -0.33 2.09 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -30.75 311.12 -10.82 -41.57 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.88 Total: 4.04 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -5.61 Total: -6.71 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.01 Total: -60.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.75 -10.82 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710119596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.405 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds