Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 120.00159 * 2 1 4 4 H 1.48494 * 109.47427 * 270.00680 * 3 2 1 5 5 H 1.48509 * 109.46668 * 30.00638 * 3 2 1 6 6 H 1.48500 * 109.46980 * 150.00181 * 3 2 1 7 7 C 1.37879 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00455 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99776 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.38534 * 119.99891 * 269.99861 * 10 9 7 12 12 C 1.39665 * 120.53515 * 188.79499 * 11 10 9 13 13 C 1.38072 * 118.33836 * 180.02562 * 12 11 10 14 14 C 1.50695 * 120.40420 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49601 * 343.74373 * 14 13 12 16 16 C 1.53006 * 117.49493 * 275.08676 * 14 13 12 17 17 N 1.32578 * 119.19790 * 359.97438 * 13 12 11 18 18 C 1.31758 * 121.01655 * 359.97438 * 17 13 12 19 19 N 1.31783 * 121.82919 * 359.72072 * 18 17 13 20 20 C 1.46500 * 119.99944 * 90.00436 * 10 9 7 21 21 C 1.52994 * 117.50138 * 55.83247 * 20 10 9 22 22 C 1.52992 * 117.50139 * 347.20599 * 20 10 9 23 23 H 0.97002 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47025 * 60.00705 * 9 7 2 25 25 H 1.09001 * 109.47265 * 300.00274 * 9 7 2 26 26 H 1.08004 * 120.82880 * 0.02562 * 12 11 10 27 27 H 1.08997 * 115.55388 * 129.41196 * 14 13 12 28 28 H 1.08999 * 117.49968 * 0.02562 * 15 14 13 29 29 H 1.09001 * 117.50110 * 145.02293 * 15 14 13 30 30 H 1.09003 * 117.49296 * 214.97533 * 16 14 13 31 31 H 1.08997 * 117.50277 * 359.97277 * 16 14 13 32 32 H 1.08000 * 119.08941 * 180.02562 * 18 17 13 33 33 H 1.09000 * 115.55906 * 201.51783 * 20 10 9 34 34 H 1.08999 * 117.49898 * 145.02372 * 21 20 10 35 35 H 1.08997 * 117.50028 * 359.97438 * 21 20 10 36 36 H 1.09000 * 117.49874 * 0.02562 * 22 20 10 37 37 H 1.09001 * 117.50213 * 214.98420 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.6531 -4.1391 -1.2003 12 6 3.4130 -5.3108 -1.2204 13 6 3.8384 -5.7952 -2.4414 14 6 4.6613 -7.0554 -2.5172 15 6 5.3170 -7.5496 -1.2262 16 6 6.1740 -6.9236 -2.3293 17 7 3.5142 -5.1382 -3.5464 18 6 2.7949 -4.0355 -3.4943 19 7 2.3628 -3.5408 -2.3518 20 6 2.6790 -4.1694 1.2682 21 6 1.6261 -4.6660 2.2610 22 6 2.3921 -3.3716 2.5417 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 3.6615 -5.8252 -0.3038 27 1 4.3051 -7.8078 -3.2208 28 1 5.1528 -6.9635 -0.3220 29 1 5.3926 -8.6272 -1.0807 30 1 6.8130 -7.5897 -2.9091 31 1 6.5741 -5.9254 -2.1513 32 1 2.5484 -3.5254 -4.4138 33 1 3.6208 -4.7159 1.2181 34 1 1.8753 -5.5390 2.8642 35 1 0.5793 -4.5780 1.9704 36 1 1.8488 -2.4326 2.4357 37 1 3.1451 -3.3931 3.3295 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710119596.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = 94.860795 kcal Electronic energy + Delta-G solvation = -19088.122674 eV Core-core repulsion = 16252.904227 eV Total energy + Delta-G solvation = -2835.218447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87886 -39.36917 -38.08780 -35.66699 -34.78651 -33.14697 -31.85319 -29.02316 -26.19689 -25.12877 -24.62411 -23.20576 -23.10565 -22.23863 -20.77617 -18.82292 -18.53635 -18.31519 -16.91778 -16.51986 -16.23226 -16.15238 -15.62982 -15.41374 -15.07250 -14.76534 -14.51313 -13.74231 -13.34869 -13.10940 -12.93316 -12.69130 -12.59745 -12.35370 -12.24980 -12.16144 -11.90917 -11.55306 -11.48253 -11.29253 -11.22762 -11.06058 -10.62315 -10.38413 -9.93557 -8.68384 -8.13130 -6.31740 0.21947 0.50700 1.35211 1.37362 1.46598 2.01738 2.38891 2.77470 2.94840 3.09993 3.15045 3.28256 3.53025 3.79646 3.88435 4.00343 4.02038 4.12227 4.17501 4.23889 4.37824 4.61604 4.68297 4.77805 4.81317 4.86010 5.02004 5.07517 5.07861 5.21872 5.25038 5.29982 5.37151 5.55582 5.67660 5.95872 6.09567 6.39800 6.69425 6.78585 7.35771 7.52790 8.86883 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.021021 B = 0.006192 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.655836 B = 4521.143433 C = 5206.733859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.519 4.519 8 H 0.042 0.958 9 C 0.276 3.724 10 N -0.561 5.561 11 C 0.425 3.575 12 C -0.294 4.294 13 C 0.218 3.782 14 C -0.125 4.125 15 C -0.153 4.153 16 C -0.155 4.155 17 N -0.582 5.582 18 C 0.324 3.676 19 N -0.602 5.602 20 C 0.069 3.931 21 C -0.177 4.177 22 C -0.181 4.181 23 H 0.265 0.735 24 H 0.005 0.995 25 H 0.019 0.981 26 H 0.162 0.838 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.208 0.792 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -14.950 1.415 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.061 0.939 9 C 0.155 3.845 10 N -0.268 5.268 11 C 0.182 3.818 12 C -0.323 4.323 13 C 0.076 3.924 14 C -0.144 4.144 15 C -0.190 4.190 16 C -0.193 4.193 17 N -0.302 5.302 18 C 0.035 3.965 19 N -0.327 5.327 20 C -0.036 4.036 21 C -0.216 4.216 22 C -0.219 4.219 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.179 0.821 27 H 0.149 0.851 28 H 0.117 0.883 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.224 0.776 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.509 -14.275 0.803 17.171 hybrid contribution -0.112 1.239 0.406 1.309 sum 9.397 -13.036 1.210 16.115 Atomic orbital electron populations 1.70028 1.07309 1.27871 1.51574 1.25678 0.95612 1.02384 0.94849 0.85557 0.78692 0.79276 0.78113 1.20617 1.20162 1.19330 1.21479 0.92529 0.91634 1.50119 0.93930 1.18693 0.87183 0.83047 0.95550 1.46465 1.44849 1.34112 1.01416 1.18898 0.87985 0.88383 0.86550 1.22066 1.09297 0.99380 1.01517 1.20886 0.90512 0.93521 0.87480 1.20818 0.94772 0.94527 1.04263 1.23216 1.01165 1.02708 0.91930 1.23028 0.90907 1.02596 1.02768 1.68169 1.18954 1.10752 1.32361 1.25028 0.87677 0.88637 0.95204 1.68120 1.29514 1.35926 0.99121 1.21819 0.99254 1.02755 0.79731 1.23451 0.96972 0.98745 1.02441 1.23348 1.04184 0.96134 0.98237 0.92568 0.97655 0.96351 0.82107 0.85084 0.88316 0.85403 0.85936 0.90169 0.77573 0.83622 0.84538 0.90890 0.90515 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.28 21.45 0.28 -55.23 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.52 -29.54 8.96 25.60 0.23 -29.31 16 8 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 9 C 0.28 14.72 4.40 85.63 0.38 15.10 16 10 N -0.56 -24.50 2.91 -683.66 -1.99 -26.49 16 11 C 0.42 18.06 7.36 133.18 0.98 19.04 16 12 C -0.29 -9.85 8.58 22.58 0.19 -9.65 16 13 C 0.22 6.90 6.49 42.41 0.28 7.17 16 14 C -0.13 -2.77 6.24 -11.54 -0.07 -2.85 16 15 C -0.15 -2.42 9.83 30.62 0.30 -2.12 16 16 C -0.16 -2.79 10.24 30.62 0.31 -2.48 16 17 N -0.58 -20.64 10.37 -188.36 -1.95 -22.59 16 18 C 0.32 12.44 12.28 180.90 2.22 14.66 16 19 N -0.60 -27.59 9.37 -197.60 -1.85 -29.44 16 20 C 0.07 2.29 5.94 44.99 0.27 2.55 16 21 C -0.18 -5.04 10.03 30.59 0.31 -4.73 16 22 C -0.18 -5.87 9.72 30.59 0.30 -5.57 16 23 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 24 H 0.01 0.33 7.55 -2.39 -0.02 0.31 16 25 H 0.02 1.02 6.25 -2.39 -0.01 1.01 16 26 H 0.16 4.30 4.73 -2.91 -0.01 4.28 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.10 1.59 6.46 -2.39 -0.02 1.57 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.21 6.59 8.06 -2.91 -0.02 6.56 16 33 H 0.15 3.85 6.61 -2.39 -0.02 3.84 16 34 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.07 2.42 7.87 -2.39 -0.02 2.40 16 36 H 0.08 3.20 6.29 -2.39 -0.02 3.18 16 37 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -70.15 311.12 3.75 -66.40 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.08 Total: 17.10 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.15 Total: 3.05 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.51 Total: -133.75 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.15 3.75 -66.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710119596.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.263 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds