Wall clock time and date at job start Mon Mar 30 2020 07:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 115.55623 * 2 1 4 4 C 1.52996 * 117.50365 * 214.31485 * 2 1 3 5 5 C 1.52996 * 117.50407 * 145.68561 * 2 1 3 6 6 C 1.53002 * 117.52044 * 214.97244 * 5 2 1 7 7 C 1.53003 * 117.49705 * 0.02562 * 5 2 1 8 8 N 1.46504 * 109.47239 * 133.95700 * 7 5 2 9 9 C 1.39679 * 120.00265 * 183.40144 * 8 7 5 10 10 C 1.39340 * 119.95137 * 0.25498 * 9 8 7 11 11 C 1.38477 * 120.42286 * 180.30229 * 10 9 8 12 12 C 1.37685 * 120.32808 * 359.72232 * 11 10 9 13 13 C 1.40749 * 119.89148 * 0.02562 * 12 11 10 14 14 C 1.41404 * 120.20831 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00025 * 24.54670 * 14 13 12 16 16 C 1.39934 * 120.00015 * 204.54189 * 14 13 12 17 17 N 1.30827 * 119.99770 * 18.13441 * 16 14 13 18 18 Si 1.86797 * 119.99918 * 198.12573 * 16 14 13 19 19 H 1.48500 * 109.47393 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47114 * 120.00733 * 18 16 14 21 21 H 1.48507 * 109.47292 * 240.00228 * 18 16 14 22 22 C 1.38275 * 119.95431 * 180.02562 * 9 8 7 23 23 H 1.08998 * 109.47015 * 274.30422 * 1 2 3 24 24 H 1.08998 * 109.47811 * 34.31116 * 1 2 3 25 25 H 1.09008 * 109.46964 * 154.31545 * 1 2 3 26 26 H 1.09002 * 109.47164 * 205.69114 * 3 2 1 27 27 H 1.08999 * 109.47586 * 325.68750 * 3 2 1 28 28 H 1.08998 * 109.47256 * 85.68915 * 3 2 1 29 29 H 1.08992 * 117.50052 * 145.01831 * 4 2 1 30 30 H 1.08998 * 117.51495 * 359.97438 * 4 2 1 31 31 H 1.08995 * 109.46817 * 201.53355 * 6 5 2 32 32 H 1.08996 * 109.46922 * 321.53603 * 6 5 2 33 33 H 1.09000 * 109.46682 * 81.53871 * 6 5 2 34 34 H 1.09001 * 109.46848 * 13.96396 * 7 5 2 35 35 H 1.09000 * 109.47008 * 253.96016 * 7 5 2 36 36 H 0.97003 * 119.99702 * 3.40949 * 8 7 5 37 37 H 1.08008 * 119.78572 * 0.02562 * 10 9 8 38 38 H 1.07999 * 119.83330 * 179.75170 * 11 10 9 39 39 H 1.07995 * 120.05832 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99955 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.15918 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 3.5492 -0.7762 1.4714 7 6 1.3589 -2.1564 1.4711 8 7 1.8646 -3.5014 1.1852 9 6 1.1814 -4.6211 1.6654 10 6 0.0161 -4.4579 2.4117 11 6 -0.6655 -5.5609 2.8978 12 6 -0.2018 -6.8322 2.6439 13 6 0.9710 -7.0129 1.8870 14 6 1.4535 -8.3155 1.6227 15 1 0.7745 -9.1553 1.6330 16 6 2.8107 -8.5164 1.3475 17 7 3.6867 -7.6008 1.6730 18 14 3.3718 -10.0921 0.5157 19 1 2.1952 -10.9591 0.2527 20 1 4.0405 -9.7628 -0.7687 21 1 4.3258 -10.8069 1.4014 22 6 1.6599 -5.8900 1.3955 23 1 -0.3633 0.0771 1.0248 24 1 -0.3634 0.8488 -0.5792 25 1 -0.3633 -0.9262 -0.4454 26 1 3.1822 1.3086 -0.4455 27 1 1.5810 2.0743 -0.5793 28 1 2.2771 1.7414 1.0247 29 1 3.1715 -0.8750 -1.2683 30 1 1.6116 -1.8587 -1.2681 31 1 4.1231 -1.6880 1.6366 32 1 4.1265 -0.0908 0.8510 33 1 3.3329 -0.3044 2.4299 34 1 0.3337 -2.0697 1.1112 35 1 1.3828 -1.9802 2.5465 36 1 2.6739 -3.6143 0.6626 37 1 -0.3554 -3.4645 2.6161 38 1 -1.5656 -5.4232 3.4786 39 1 -0.7367 -7.6893 3.0254 40 1 4.6276 -7.7402 1.4826 41 1 2.5607 -6.0179 0.8136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717062309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:47 Heat of formation + Delta-G solvation = 26.800585 kcal Electronic energy + Delta-G solvation = -19053.737527 eV Core-core repulsion = 16319.108112 eV Total energy + Delta-G solvation = -2734.629416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.44651 -37.52814 -34.52452 -33.12611 -30.65138 -29.37759 -28.69648 -27.74107 -26.92558 -25.19927 -24.58706 -21.05544 -20.49932 -19.63339 -17.85017 -17.12934 -15.83518 -15.12468 -14.96529 -14.70872 -14.26732 -14.23144 -13.78502 -13.30258 -12.77768 -12.68385 -12.62248 -12.37361 -12.23191 -12.12340 -12.02701 -11.95000 -11.52344 -11.32917 -11.14360 -10.98774 -10.63172 -10.55281 -10.32214 -9.72297 -9.64519 -9.42508 -9.27765 -9.17550 -8.67342 -7.25732 -6.68544 -6.08067 -4.26224 2.89402 3.12729 3.18585 3.28432 3.38643 3.57313 4.01407 4.44363 4.64592 4.73315 4.77269 4.88290 5.04801 5.14537 5.46421 5.54817 5.73014 5.78568 5.81329 5.85128 5.87002 5.88986 5.93598 6.00764 6.05999 6.15719 6.25330 6.30514 6.32996 6.43535 6.64440 6.93967 7.17332 7.19102 7.43738 7.51149 7.88092 8.02273 8.17174 8.23179 8.55092 8.80344 8.90381 9.06659 9.18353 10.30217 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.004714 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.173290 B = 5938.201447 C = 6618.280572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.162 4.162 5 C -0.130 4.130 6 C -0.113 4.113 7 C 0.172 3.828 8 N -0.756 5.756 9 C 0.218 3.782 10 C -0.300 4.300 11 C -0.066 4.066 12 C -0.258 4.258 13 C 0.139 3.861 14 C -0.466 4.466 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.902 3.098 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.276 1.276 22 C -0.232 4.232 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.389 0.611 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.276 0.724 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 13.592 -3.719 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.120 4.120 3 C -0.169 4.169 4 C -0.199 4.199 5 C -0.130 4.130 6 C -0.170 4.170 7 C 0.047 3.953 8 N -0.389 5.389 9 C 0.119 3.881 10 C -0.323 4.323 11 C -0.085 4.085 12 C -0.279 4.279 13 C 0.136 3.864 14 C -0.496 4.496 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.418 5.418 18 Si 0.727 3.273 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.256 4.256 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.222 0.778 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.068 13.783 -3.628 14.253 hybrid contribution 0.715 -0.762 -0.466 1.144 sum 0.783 13.021 -4.094 13.672 Atomic orbital electron populations 1.21377 0.92149 1.01923 1.01913 1.21612 0.94747 0.91023 1.04612 1.21326 0.99770 0.94077 1.01684 1.23273 1.02119 1.00853 0.93644 1.21846 0.98241 0.99246 0.93663 1.21294 0.94554 1.01415 0.99699 1.20544 0.95606 0.81476 0.97719 1.44379 1.30286 1.02137 1.62148 1.17651 0.91041 0.86412 0.93038 1.19878 1.01049 0.96633 1.14740 1.20276 0.97170 0.93046 0.97998 1.20849 1.02803 0.94912 1.09340 1.17318 0.89602 0.92790 0.86680 1.19578 0.93216 0.94099 1.42678 0.90599 1.25864 0.96792 0.97903 0.93313 1.69883 1.02815 1.34237 1.34899 0.86368 0.79259 0.82102 0.79568 1.18462 1.19874 1.20144 1.20708 1.05022 0.89390 1.10515 0.92106 0.92399 0.92055 0.92573 0.92380 0.92281 0.89084 0.88558 0.91854 0.92670 0.92349 0.92722 0.93429 0.77752 0.89776 0.89724 0.89459 0.91311 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 8.37 37.16 0.31 -0.95 16 2 C -0.12 -1.33 2.70 -154.51 -0.42 -1.75 16 3 C -0.11 -1.03 8.70 37.16 0.32 -0.71 16 4 C -0.16 -1.98 9.19 -26.73 -0.25 -2.23 16 5 C -0.13 -1.68 2.11 -154.51 -0.33 -2.00 16 6 C -0.11 -1.35 9.15 37.16 0.34 -1.01 16 7 C 0.17 2.77 4.64 -4.04 -0.02 2.75 16 8 N -0.76 -14.75 5.69 -58.68 -0.33 -15.08 16 9 C 0.22 5.18 6.64 -83.86 -0.56 4.62 16 10 C -0.30 -7.00 9.31 -39.08 -0.36 -7.36 16 11 C -0.07 -1.56 10.01 -39.70 -0.40 -1.96 16 12 C -0.26 -6.67 9.79 -38.84 -0.38 -7.05 16 13 C 0.14 3.86 5.57 -106.85 -0.60 3.26 16 14 C -0.47 -12.80 9.05 -37.74 -0.34 -13.14 16 15 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 16 C 0.08 2.03 5.13 -17.35 -0.09 1.94 16 17 N -0.79 -21.00 10.98 55.55 0.61 -20.39 16 18 Si 0.90 19.15 29.60 -169.99 -5.03 14.11 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.23 -6.19 8.53 -38.68 -0.33 -6.52 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.54 7.92 -51.93 -0.41 0.12 16 25 H 0.06 0.73 7.33 -51.92 -0.38 0.35 16 26 H 0.06 0.49 7.26 -51.93 -0.38 0.12 16 27 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.10 1.29 8.05 -51.93 -0.42 0.88 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.57 6.90 -51.93 -0.36 0.21 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.89 5.68 -51.93 -0.30 0.60 16 35 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.39 7.37 8.48 -40.82 -0.35 7.03 16 37 H 0.08 1.78 6.70 -52.48 -0.35 1.43 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 41 H 0.12 3.17 6.17 -52.49 -0.32 2.85 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -28.20 329.87 -9.47 -37.66 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -6.59 Total: 10.84 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -3.09 Total: -32.11 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.28 Total: -35.48 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.20 -9.47 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717062309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.464 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds