Wall clock time and date at job start Mon Mar 30 2020 07:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 115.55623 * 2 1 4 4 C 1.52996 * 117.50365 * 214.31485 * 2 1 3 5 5 C 1.52996 * 117.50407 * 145.68561 * 2 1 3 6 6 C 1.53002 * 117.52044 * 214.97244 * 5 2 1 7 7 C 1.53003 * 117.49705 * 0.02562 * 5 2 1 8 8 N 1.46504 * 109.47239 * 133.95700 * 7 5 2 9 9 C 1.39679 * 120.00265 * 183.40144 * 8 7 5 10 10 C 1.39340 * 119.95137 * 0.25498 * 9 8 7 11 11 C 1.38477 * 120.42286 * 180.30229 * 10 9 8 12 12 C 1.37685 * 120.32808 * 359.72232 * 11 10 9 13 13 C 1.40749 * 119.89148 * 0.02562 * 12 11 10 14 14 C 1.41404 * 120.20831 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00025 * 24.54670 * 14 13 12 16 16 C 1.39934 * 120.00015 * 204.54189 * 14 13 12 17 17 N 1.30827 * 119.99770 * 18.13441 * 16 14 13 18 18 Si 1.86797 * 119.99918 * 198.12573 * 16 14 13 19 19 H 1.48500 * 109.47393 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47114 * 120.00733 * 18 16 14 21 21 H 1.48507 * 109.47292 * 240.00228 * 18 16 14 22 22 C 1.38275 * 119.95431 * 180.02562 * 9 8 7 23 23 H 1.08998 * 109.47015 * 274.30422 * 1 2 3 24 24 H 1.08998 * 109.47811 * 34.31116 * 1 2 3 25 25 H 1.09008 * 109.46964 * 154.31545 * 1 2 3 26 26 H 1.09002 * 109.47164 * 205.69114 * 3 2 1 27 27 H 1.08999 * 109.47586 * 325.68750 * 3 2 1 28 28 H 1.08998 * 109.47256 * 85.68915 * 3 2 1 29 29 H 1.08992 * 117.50052 * 145.01831 * 4 2 1 30 30 H 1.08998 * 117.51495 * 359.97438 * 4 2 1 31 31 H 1.08995 * 109.46817 * 201.53355 * 6 5 2 32 32 H 1.08996 * 109.46922 * 321.53603 * 6 5 2 33 33 H 1.09000 * 109.46682 * 81.53871 * 6 5 2 34 34 H 1.09001 * 109.46848 * 13.96396 * 7 5 2 35 35 H 1.09000 * 109.47008 * 253.96016 * 7 5 2 36 36 H 0.97003 * 119.99702 * 3.40949 * 8 7 5 37 37 H 1.08008 * 119.78572 * 0.02562 * 10 9 8 38 38 H 1.07999 * 119.83330 * 179.75170 * 11 10 9 39 39 H 1.07995 * 120.05832 * 179.97438 * 12 11 10 40 40 H 0.97006 * 119.99955 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.15918 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7650 6 6 3.5492 -0.7762 1.4714 7 6 1.3589 -2.1564 1.4711 8 7 1.8646 -3.5014 1.1852 9 6 1.1814 -4.6211 1.6654 10 6 0.0161 -4.4579 2.4117 11 6 -0.6655 -5.5609 2.8978 12 6 -0.2018 -6.8322 2.6439 13 6 0.9710 -7.0129 1.8870 14 6 1.4535 -8.3155 1.6227 15 1 0.7745 -9.1553 1.6330 16 6 2.8107 -8.5164 1.3475 17 7 3.6867 -7.6008 1.6730 18 14 3.3718 -10.0921 0.5157 19 1 2.1952 -10.9591 0.2527 20 1 4.0405 -9.7628 -0.7687 21 1 4.3258 -10.8069 1.4014 22 6 1.6599 -5.8900 1.3955 23 1 -0.3633 0.0771 1.0248 24 1 -0.3634 0.8488 -0.5792 25 1 -0.3633 -0.9262 -0.4454 26 1 3.1822 1.3086 -0.4455 27 1 1.5810 2.0743 -0.5793 28 1 2.2771 1.7414 1.0247 29 1 3.1715 -0.8750 -1.2683 30 1 1.6116 -1.8587 -1.2681 31 1 4.1231 -1.6880 1.6366 32 1 4.1265 -0.0908 0.8510 33 1 3.3329 -0.3044 2.4299 34 1 0.3337 -2.0697 1.1112 35 1 1.3828 -1.9802 2.5465 36 1 2.6739 -3.6143 0.6626 37 1 -0.3554 -3.4645 2.6161 38 1 -1.5656 -5.4232 3.4786 39 1 -0.7367 -7.6893 3.0254 40 1 4.6276 -7.7402 1.4826 41 1 2.5607 -6.0179 0.8136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717062309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:47 Heat of formation + Delta-G solvation = 13.210241 kcal Electronic energy + Delta-G solvation = -19054.326849 eV Core-core repulsion = 16319.108112 eV Total energy + Delta-G solvation = -2735.218738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54316 -39.32268 -36.25512 -34.96724 -31.76218 -31.33913 -30.03253 -28.78616 -27.96564 -27.13074 -26.02534 -22.92978 -21.94589 -21.11523 -19.06250 -18.95782 -17.46660 -16.59554 -16.51250 -16.14871 -15.91639 -15.52008 -14.79066 -14.61086 -14.51053 -14.21769 -14.01123 -13.83076 -13.36412 -13.23615 -13.10692 -12.92825 -12.88424 -12.81373 -12.72618 -12.47488 -12.28245 -12.10097 -11.66913 -11.53564 -11.32287 -11.07953 -10.67874 -10.43850 -10.32828 -9.25570 -8.62333 -7.89076 -6.32102 1.07684 1.33571 1.38274 1.53128 1.57472 2.23131 2.48169 2.81216 3.10227 3.65401 3.72875 3.86484 3.88701 4.06521 4.19873 4.50744 4.53271 4.68702 4.77884 4.78565 4.83370 4.88975 4.89493 4.98985 5.00674 5.04788 5.06229 5.09452 5.16617 5.20390 5.28760 5.31073 5.36663 5.45348 5.51788 5.60910 5.96574 6.10885 6.21545 6.27067 6.58538 6.95022 7.05598 7.07287 7.26072 8.38461 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.004714 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.173290 B = 5938.201447 C = 6618.280572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C -0.110 4.110 4 C -0.166 4.166 5 C -0.141 4.141 6 C -0.108 4.108 7 C 0.171 3.829 8 N -0.749 5.749 9 C 0.221 3.779 10 C -0.304 4.304 11 C -0.062 4.062 12 C -0.286 4.286 13 C 0.110 3.890 14 C -0.505 4.505 15 H 0.072 0.928 16 C 0.038 3.962 17 N -0.823 5.823 18 Si 0.979 3.021 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.261 4.261 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.390 0.610 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.285 0.715 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 15.270 -4.215 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.102 4.102 3 C -0.167 4.167 4 C -0.203 4.203 5 C -0.142 4.142 6 C -0.165 4.165 7 C 0.047 3.953 8 N -0.380 5.380 9 C 0.119 3.881 10 C -0.327 4.327 11 C -0.080 4.080 12 C -0.307 4.307 13 C 0.107 3.893 14 C -0.535 4.535 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.449 5.449 18 Si 0.800 3.200 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.285 4.285 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.224 0.776 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.246 15.506 -4.122 16.046 hybrid contribution 0.611 -1.155 -0.283 1.337 sum 0.857 14.350 -4.405 15.036 Atomic orbital electron populations 1.21417 0.91952 1.02039 1.02237 1.21749 0.94950 0.91542 1.02002 1.21363 1.00183 0.92711 1.02479 1.23285 1.02757 1.01328 0.92927 1.21756 0.98730 0.99773 0.93928 1.21265 0.93940 1.01025 1.00302 1.20663 0.96337 0.80397 0.97854 1.44491 1.29808 1.02580 1.61124 1.17783 0.91223 0.86805 0.92265 1.20201 1.00638 0.97801 1.14070 1.20641 0.97935 0.92195 0.97259 1.21017 1.03044 0.96206 1.10408 1.17712 0.90717 0.93478 0.87437 1.19831 0.94407 0.94191 1.45032 0.91031 1.26717 0.96204 1.01608 0.93161 1.69936 1.03443 1.36232 1.35242 0.85214 0.78752 0.77460 0.78564 1.18293 1.18907 1.18994 1.20636 1.05180 0.90633 1.12051 0.91969 0.90421 0.93557 0.91909 0.90958 0.91653 0.87779 0.90211 0.93670 0.90689 0.91845 0.92690 0.93915 0.77625 0.87259 0.86377 0.89166 0.90470 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.37 71.98 0.60 -1.73 16 2 C -0.10 -2.03 2.70 -52.19 -0.14 -2.17 16 3 C -0.11 -1.66 8.70 71.98 0.63 -1.03 16 4 C -0.17 -3.82 9.19 30.59 0.28 -3.53 16 5 C -0.14 -3.45 2.11 -52.18 -0.11 -3.56 16 6 C -0.11 -2.41 9.15 71.98 0.66 -1.75 16 7 C 0.17 5.37 4.64 86.38 0.40 5.78 16 8 N -0.75 -29.32 5.69 -339.57 -1.93 -31.25 16 9 C 0.22 10.64 6.64 38.17 0.25 10.89 16 10 C -0.30 -13.96 9.31 22.59 0.21 -13.75 16 11 C -0.06 -2.88 10.01 22.20 0.22 -2.66 16 12 C -0.29 -15.10 9.79 22.75 0.22 -14.88 16 13 C 0.11 6.30 5.57 -21.31 -0.12 6.18 16 14 C -0.50 -28.81 9.05 23.46 0.21 -28.60 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.04 1.99 5.13 85.25 0.44 2.43 16 17 N -0.82 -44.72 10.98 21.82 0.24 -44.48 16 18 Si 0.98 39.78 29.60 68.60 2.03 41.81 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 22 C -0.26 -14.39 8.53 22.86 0.20 -14.20 16 23 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 24 H 0.08 1.21 7.92 -2.39 -0.02 1.19 16 25 H 0.05 1.04 7.33 -2.38 -0.02 1.02 16 26 H 0.06 0.88 7.26 -2.39 -0.02 0.86 16 27 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.08 2.11 8.05 -2.39 -0.02 2.09 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.36 6.90 -2.39 -0.02 1.34 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.73 5.68 -2.39 -0.01 1.72 16 35 H 0.04 1.39 8.07 -2.39 -0.02 1.38 16 36 H 0.39 15.05 8.48 -92.71 -0.79 14.26 16 37 H 0.11 4.41 6.70 -2.91 -0.02 4.39 16 38 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 39 H 0.09 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.28 13.94 8.30 -92.70 -0.77 13.17 16 41 H 0.10 5.65 6.17 -2.91 -0.02 5.63 16 Total: -1.00 -62.12 329.87 4.51 -57.61 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.22 Total: 38.90 kcal Atomic # 6 Polarization: -66.54 SS G_CDS: 3.95 Total: -62.59 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -1.69 Total: -75.73 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -62.12 4.51 -57.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717062309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.822 kcal (2) G-P(sol) polarization free energy of solvation -62.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds