Wall clock time and date at job start Mon Mar 30 2020 07:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.56076 * 2 1 4 4 C 1.53001 * 117.50027 * 214.30890 * 2 1 3 5 5 C 1.53002 * 117.49733 * 145.68417 * 2 1 3 6 6 C 1.52999 * 117.51824 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50033 * 214.98174 * 5 2 1 8 8 N 1.46495 * 109.47355 * 226.12368 * 7 5 2 9 9 C 1.38856 * 120.00156 * 178.74026 * 8 7 5 10 10 C 1.39570 * 119.83970 * 179.97438 * 9 8 7 11 11 C 1.36340 * 120.15797 * 179.72882 * 10 9 8 12 12 C 1.40886 * 119.83732 * 0.24753 * 11 10 9 13 13 C 1.41134 * 120.15704 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00239 * 205.27860 * 13 12 11 15 15 C 1.39867 * 119.99888 * 25.26907 * 13 12 11 16 16 N 1.30904 * 120.00024 * 17.35206 * 15 13 12 17 17 Si 1.86808 * 120.00047 * 197.34547 * 15 13 12 18 18 H 1.48496 * 109.46873 * 60.00234 * 17 15 13 19 19 H 1.48495 * 109.46929 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46785 * 300.00388 * 17 15 13 21 21 C 1.40882 * 119.68856 * 0.02562 * 12 11 10 22 22 C 1.36345 * 119.83881 * 0.02562 * 21 12 11 23 23 H 1.08994 * 109.47122 * 274.31518 * 1 2 3 24 24 H 1.08997 * 109.46683 * 34.31485 * 1 2 3 25 25 H 1.09000 * 109.46702 * 154.30882 * 1 2 3 26 26 H 1.08998 * 109.47214 * 205.68293 * 3 2 1 27 27 H 1.09001 * 109.47213 * 325.68500 * 3 2 1 28 28 H 1.09006 * 109.47179 * 85.68530 * 3 2 1 29 29 H 1.09001 * 117.49727 * 145.02570 * 4 2 1 30 30 H 1.09004 * 117.51489 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.47112 * 278.13816 * 6 5 2 32 32 H 1.09008 * 109.47211 * 38.13307 * 6 5 2 33 33 H 1.09000 * 109.47531 * 158.13388 * 6 5 2 34 34 H 1.08998 * 109.47424 * 106.12123 * 7 5 2 35 35 H 1.09003 * 109.47225 * 346.12340 * 7 5 2 36 36 H 0.97004 * 119.99934 * 358.73779 * 8 7 5 37 37 H 1.07998 * 119.92301 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.07835 * 180.23425 * 11 10 9 39 39 H 0.97007 * 119.99761 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.08053 * 179.97438 * 21 12 11 41 41 H 1.07992 * 119.91689 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7651 6 6 1.3592 -2.1566 1.4713 7 6 3.5489 -0.7759 1.4716 8 7 4.5450 -1.8110 1.1844 9 6 5.8298 -1.7001 1.6991 10 6 6.7760 -2.6886 1.4238 11 6 8.0410 -2.5834 1.9213 12 6 8.3906 -1.4763 2.7193 13 6 9.6980 -1.3609 3.2383 14 1 9.8737 -0.7885 4.1371 15 6 10.7661 -1.9881 2.5886 16 7 10.6351 -2.3862 1.3485 17 14 12.3797 -2.2575 3.4905 18 1 12.1421 -3.1026 4.6882 19 1 13.3437 -2.9366 2.5881 20 1 12.9358 -0.9467 3.9121 21 6 7.4287 -0.4853 2.9978 22 6 6.1671 -0.6040 2.4945 23 1 -0.3633 0.0773 1.0247 24 1 -0.3632 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1824 1.3084 -0.4454 27 1 1.5812 2.0743 -0.5793 28 1 2.2772 1.7414 1.0248 29 1 3.1717 -0.8752 -1.2682 30 1 1.6115 -1.8589 -1.2680 31 1 1.0313 -1.7604 2.4323 32 1 0.4888 -2.3775 0.8533 33 1 1.9324 -3.0699 1.6313 34 1 3.3797 -0.7230 2.5470 35 1 3.9122 0.1873 1.1132 36 1 4.3069 -2.5739 0.6346 37 1 6.5065 -3.5367 0.8119 38 1 8.7732 -3.3471 1.7043 39 1 11.3761 -2.8208 0.8978 40 1 7.6897 0.3658 3.6092 41 1 5.4289 0.1550 2.7068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717129432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:50 Heat of formation + Delta-G solvation = 30.442732 kcal Electronic energy + Delta-G solvation = -18830.759746 eV Core-core repulsion = 16096.288265 eV Total energy + Delta-G solvation = -2734.471481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.50224 -37.68160 -34.71091 -32.80622 -30.65069 -29.56601 -28.70812 -28.04234 -27.17404 -25.61225 -23.80165 -21.11149 -20.49966 -19.82036 -17.91560 -17.08544 -16.00050 -15.37762 -15.07444 -14.73368 -14.40717 -13.90882 -13.74568 -13.36300 -12.75799 -12.68666 -12.62219 -12.32253 -12.26396 -12.10107 -12.06367 -11.90282 -11.68281 -11.38382 -11.16616 -11.01816 -10.87600 -10.61712 -10.41843 -9.79637 -9.64224 -9.40288 -9.24140 -9.16654 -8.46940 -7.44394 -6.59684 -6.32292 -3.99338 2.96469 3.14272 3.16577 3.19924 3.40171 3.52755 4.08522 4.41925 4.59825 4.68357 4.81103 4.84673 5.00995 5.08582 5.42273 5.51663 5.67486 5.72609 5.77515 5.80409 5.84044 5.85601 5.89641 5.95712 6.01422 6.10273 6.19523 6.26290 6.32499 6.35138 6.39445 6.90802 7.11604 7.25039 7.35849 7.64939 7.71265 7.85087 8.19070 8.38993 8.55637 8.74677 8.86207 9.10190 9.20090 10.41915 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.003681 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.459293 B = 7604.938799 C = 7733.576762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C -0.117 4.117 4 C -0.163 4.163 5 C -0.130 4.130 6 C -0.112 4.112 7 C 0.173 3.827 8 N -0.757 5.757 9 C 0.096 3.904 10 C -0.165 4.165 11 C -0.121 4.121 12 C 0.074 3.926 13 C -0.469 4.469 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.810 5.810 17 Si 0.903 3.097 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.188 4.188 22 C -0.162 4.162 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.384 0.616 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.090 0.910 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.627 1.937 -3.073 16.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.120 4.120 3 C -0.174 4.174 4 C -0.200 4.200 5 C -0.130 4.130 6 C -0.169 4.169 7 C 0.048 3.952 8 N -0.393 5.393 9 C -0.001 4.001 10 C -0.187 4.187 11 C -0.141 4.141 12 C 0.071 3.929 13 C -0.500 4.500 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.437 5.437 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.208 4.208 22 C -0.184 4.184 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.217 0.783 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.541 2.007 -3.174 15.988 hybrid contribution 0.761 -0.416 0.067 0.870 sum -14.780 1.592 -3.107 15.186 Atomic orbital electron populations 1.21328 0.92254 1.01584 1.01703 1.21618 0.94446 0.91374 1.04518 1.21382 1.00225 0.93839 1.01976 1.23280 1.02287 1.00802 0.93625 1.21844 0.97702 0.99871 0.93600 1.21288 0.98156 0.97667 0.99765 1.20498 0.85203 0.91857 0.97620 1.43838 1.08887 1.26192 1.60368 1.17363 0.84613 0.97354 1.00810 1.20038 0.94497 0.98550 1.05617 1.20911 0.93919 0.98600 1.00646 1.17475 0.92715 0.90359 0.92361 1.19328 0.91598 1.29104 1.09971 0.91041 1.25785 1.00393 0.93708 0.94138 1.69848 1.32984 1.31326 1.09572 0.86466 0.81138 0.79334 0.80245 1.19120 1.20619 1.19308 1.20562 0.94114 0.99418 1.06704 1.19852 0.96968 0.97874 1.03703 0.92266 0.92341 0.92597 0.92020 0.92370 0.92063 0.88545 0.89117 0.92326 0.92678 0.92021 0.93539 0.93023 0.78320 0.89612 0.86412 0.91331 0.89192 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 8.70 37.16 0.32 -0.65 16 2 C -0.12 -1.26 2.70 -154.51 -0.42 -1.68 16 3 C -0.12 -1.24 8.37 37.16 0.31 -0.93 16 4 C -0.16 -1.85 9.19 -26.73 -0.25 -2.10 16 5 C -0.13 -1.56 2.11 -154.51 -0.33 -1.89 16 6 C -0.11 -1.20 9.15 37.16 0.34 -0.86 16 7 C 0.17 2.64 4.60 -4.05 -0.02 2.62 16 8 N -0.76 -13.52 5.66 -58.50 -0.33 -13.85 16 9 C 0.10 2.13 6.67 -83.69 -0.56 1.57 16 10 C -0.17 -3.94 9.82 -39.77 -0.39 -4.33 16 11 C -0.12 -3.22 8.63 -39.26 -0.34 -3.56 16 12 C 0.07 2.03 5.57 -106.80 -0.59 1.44 16 13 C -0.47 -12.96 9.03 -37.87 -0.34 -13.31 16 14 H 0.07 1.91 7.90 -52.49 -0.41 1.49 16 15 C 0.07 1.96 5.14 -17.34 -0.09 1.87 16 16 N -0.81 -21.84 10.97 55.54 0.61 -21.23 16 17 Si 0.90 19.53 29.59 -169.99 -5.03 14.49 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 21 C -0.19 -4.76 9.74 -39.26 -0.38 -5.15 16 22 C -0.16 -3.74 9.23 -39.77 -0.37 -4.10 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 25 H 0.05 0.46 7.26 -51.93 -0.38 0.08 16 26 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 27 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 30 H 0.09 0.92 8.05 -51.93 -0.42 0.51 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.51 6.89 -51.92 -0.36 0.15 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.74 7.96 -51.93 -0.41 0.33 16 35 H 0.05 0.82 5.80 -51.93 -0.30 0.52 16 36 H 0.38 6.35 8.47 -40.82 -0.35 6.00 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 3.25 6.19 -52.49 -0.32 2.92 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.50 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.09 1.79 6.68 -52.49 -0.35 1.44 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -28.15 329.54 -9.47 -37.63 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.59 Total: 9.04 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -3.10 Total: -31.06 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.28 Total: -35.08 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.15 -9.47 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717129432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.072 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds