Wall clock time and date at job start Mon Mar 30 2020 07:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 115.56076 * 2 1 4 4 C 1.53001 * 117.50027 * 214.30890 * 2 1 3 5 5 C 1.53002 * 117.49733 * 145.68417 * 2 1 3 6 6 C 1.52999 * 117.51824 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50033 * 214.98174 * 5 2 1 8 8 N 1.46495 * 109.47355 * 226.12368 * 7 5 2 9 9 C 1.38856 * 120.00156 * 178.74026 * 8 7 5 10 10 C 1.39570 * 119.83970 * 179.97438 * 9 8 7 11 11 C 1.36340 * 120.15797 * 179.72882 * 10 9 8 12 12 C 1.40886 * 119.83732 * 0.24753 * 11 10 9 13 13 C 1.41134 * 120.15704 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00239 * 205.27860 * 13 12 11 15 15 C 1.39867 * 119.99888 * 25.26907 * 13 12 11 16 16 N 1.30904 * 120.00024 * 17.35206 * 15 13 12 17 17 Si 1.86808 * 120.00047 * 197.34547 * 15 13 12 18 18 H 1.48496 * 109.46873 * 60.00234 * 17 15 13 19 19 H 1.48495 * 109.46929 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46785 * 300.00388 * 17 15 13 21 21 C 1.40882 * 119.68856 * 0.02562 * 12 11 10 22 22 C 1.36345 * 119.83881 * 0.02562 * 21 12 11 23 23 H 1.08994 * 109.47122 * 274.31518 * 1 2 3 24 24 H 1.08997 * 109.46683 * 34.31485 * 1 2 3 25 25 H 1.09000 * 109.46702 * 154.30882 * 1 2 3 26 26 H 1.08998 * 109.47214 * 205.68293 * 3 2 1 27 27 H 1.09001 * 109.47213 * 325.68500 * 3 2 1 28 28 H 1.09006 * 109.47179 * 85.68530 * 3 2 1 29 29 H 1.09001 * 117.49727 * 145.02570 * 4 2 1 30 30 H 1.09004 * 117.51489 * 359.97438 * 4 2 1 31 31 H 1.09000 * 109.47112 * 278.13816 * 6 5 2 32 32 H 1.09008 * 109.47211 * 38.13307 * 6 5 2 33 33 H 1.09000 * 109.47531 * 158.13388 * 6 5 2 34 34 H 1.08998 * 109.47424 * 106.12123 * 7 5 2 35 35 H 1.09003 * 109.47225 * 346.12340 * 7 5 2 36 36 H 0.97004 * 119.99934 * 358.73779 * 8 7 5 37 37 H 1.07998 * 119.92301 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.07835 * 180.23425 * 11 10 9 39 39 H 0.97007 * 119.99761 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.08053 * 179.97438 * 21 12 11 41 41 H 1.07992 * 119.91689 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7651 6 6 1.3592 -2.1566 1.4713 7 6 3.5489 -0.7759 1.4716 8 7 4.5450 -1.8110 1.1844 9 6 5.8298 -1.7001 1.6991 10 6 6.7760 -2.6886 1.4238 11 6 8.0410 -2.5834 1.9213 12 6 8.3906 -1.4763 2.7193 13 6 9.6980 -1.3609 3.2383 14 1 9.8737 -0.7885 4.1371 15 6 10.7661 -1.9881 2.5886 16 7 10.6351 -2.3862 1.3485 17 14 12.3797 -2.2575 3.4905 18 1 12.1421 -3.1026 4.6882 19 1 13.3437 -2.9366 2.5881 20 1 12.9358 -0.9467 3.9121 21 6 7.4287 -0.4853 2.9978 22 6 6.1671 -0.6040 2.4945 23 1 -0.3633 0.0773 1.0247 24 1 -0.3632 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.1824 1.3084 -0.4454 27 1 1.5812 2.0743 -0.5793 28 1 2.2772 1.7414 1.0248 29 1 3.1717 -0.8752 -1.2682 30 1 1.6115 -1.8589 -1.2680 31 1 1.0313 -1.7604 2.4323 32 1 0.4888 -2.3775 0.8533 33 1 1.9324 -3.0699 1.6313 34 1 3.3797 -0.7230 2.5470 35 1 3.9122 0.1873 1.1132 36 1 4.3069 -2.5739 0.6346 37 1 6.5065 -3.5367 0.8119 38 1 8.7732 -3.3471 1.7043 39 1 11.3761 -2.8208 0.8978 40 1 7.6897 0.3658 3.6092 41 1 5.4289 0.1550 2.7068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717129432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:49 Heat of formation + Delta-G solvation = 16.924585 kcal Electronic energy + Delta-G solvation = -18831.345937 eV Core-core repulsion = 16096.288265 eV Total energy + Delta-G solvation = -2735.057671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54928 -39.44779 -36.42166 -34.59362 -31.84667 -31.32583 -30.32016 -29.01921 -28.16343 -26.98580 -25.52262 -22.86909 -22.14744 -21.10311 -19.22567 -18.81962 -17.54523 -17.06032 -16.32063 -16.02599 -15.71913 -15.48803 -14.78080 -14.61394 -14.38876 -14.23211 -13.88809 -13.78508 -13.51784 -13.24401 -13.12422 -12.99422 -12.86668 -12.82764 -12.71107 -12.60988 -12.25378 -12.24788 -11.65073 -11.57430 -11.21100 -11.05117 -10.63218 -10.34178 -10.24211 -9.40564 -8.54282 -8.14630 -6.00766 1.10682 1.19131 1.40137 1.51242 1.60283 2.27795 2.52293 2.84880 3.15592 3.68078 3.75118 3.85329 3.90605 4.08768 4.20926 4.44963 4.47756 4.55400 4.73686 4.78448 4.85437 4.91340 4.91628 4.99682 5.02976 5.06390 5.07234 5.11171 5.17566 5.19976 5.30353 5.31969 5.38838 5.42394 5.52861 5.73992 5.76839 5.92715 6.18367 6.41397 6.68311 6.88581 7.08642 7.14328 7.31945 8.49080 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.003681 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.459293 B = 7604.938799 C = 7733.576762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C -0.120 4.120 4 C -0.164 4.164 5 C -0.138 4.138 6 C -0.108 4.108 7 C 0.171 3.829 8 N -0.746 5.746 9 C 0.115 3.885 10 C -0.176 4.176 11 C -0.139 4.139 12 C 0.036 3.964 13 C -0.508 4.508 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.843 5.843 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.262 1.262 21 C -0.197 4.197 22 C -0.169 4.169 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.393 0.607 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.282 0.718 40 H 0.095 0.905 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 2.053 -3.380 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.177 4.177 4 C -0.201 4.201 5 C -0.138 4.138 6 C -0.165 4.165 7 C 0.047 3.953 8 N -0.381 5.381 9 C 0.015 3.985 10 C -0.198 4.198 11 C -0.159 4.159 12 C 0.033 3.967 13 C -0.540 4.540 14 H 0.086 0.914 15 C -0.180 4.180 16 N -0.471 5.471 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.187 1.187 21 C -0.217 4.217 22 C -0.191 4.191 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.227 0.773 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.476 2.128 -3.496 17.948 hybrid contribution 1.157 -0.397 0.097 1.227 sum -16.319 1.731 -3.399 16.759 Atomic orbital electron populations 1.21353 0.90316 1.02617 1.02399 1.21746 0.95755 0.90722 1.02641 1.21413 0.99751 0.94464 1.02081 1.23298 1.02122 1.01751 0.92926 1.21746 0.96615 1.01603 0.93863 1.21270 0.98376 0.96680 1.00161 1.20602 0.86087 0.90767 0.97841 1.43908 1.07710 1.27080 1.59378 1.17465 0.85984 0.96021 0.99031 1.20230 0.93949 0.99778 1.05833 1.20854 0.94838 0.98403 1.01813 1.17797 0.93585 0.91497 0.93855 1.19570 0.92678 1.31088 1.10619 0.91439 1.26618 1.03837 0.92875 0.94678 1.69914 1.34394 1.31962 1.10833 0.85333 0.76488 0.79399 0.78885 1.18749 1.19420 1.18661 1.20758 0.94829 0.99236 1.06892 1.20081 0.96716 0.98780 1.03529 0.91742 0.91228 0.91712 0.93646 0.90638 0.92174 0.90160 0.87512 0.92057 0.90784 0.92992 0.93903 0.93577 0.77276 0.87573 0.88196 0.90755 0.88709 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.70 71.98 0.63 -0.89 16 2 C -0.11 -2.01 2.70 -52.18 -0.14 -2.15 16 3 C -0.12 -2.31 8.37 71.98 0.60 -1.71 16 4 C -0.16 -3.35 9.19 30.60 0.28 -3.07 16 5 C -0.14 -3.00 2.11 -52.18 -0.11 -3.11 16 6 C -0.11 -2.03 9.15 71.98 0.66 -1.37 16 7 C 0.17 4.93 4.60 86.38 0.40 5.32 16 8 N -0.75 -25.52 5.66 -339.01 -1.92 -27.44 16 9 C 0.11 5.03 6.67 38.67 0.26 5.29 16 10 C -0.18 -8.42 9.82 22.15 0.22 -8.20 16 11 C -0.14 -7.66 8.63 22.48 0.19 -7.46 16 12 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 13 C -0.51 -29.15 9.03 23.38 0.21 -28.94 16 14 H 0.07 3.75 7.90 -2.91 -0.02 3.73 16 15 C 0.03 1.70 5.14 85.23 0.44 2.13 16 16 N -0.84 -46.75 10.97 21.82 0.24 -46.51 16 17 Si 0.98 40.71 29.59 68.60 2.03 42.74 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 C -0.20 -10.19 9.74 22.48 0.22 -9.97 16 22 C -0.17 -7.73 9.23 22.15 0.20 -7.52 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.83 7.92 -2.39 -0.02 0.81 16 25 H 0.06 0.80 7.26 -2.39 -0.02 0.78 16 26 H 0.04 1.01 7.33 -2.39 -0.02 0.99 16 27 H 0.07 1.18 7.92 -2.39 -0.02 1.16 16 28 H 0.06 1.16 8.09 -2.38 -0.02 1.14 16 29 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 30 H 0.11 1.84 8.05 -2.38 -0.02 1.82 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 6.89 -2.38 -0.02 1.10 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.04 1.29 7.96 -2.39 -0.02 1.27 16 35 H 0.05 1.40 5.80 -2.39 -0.01 1.39 16 36 H 0.39 12.27 8.47 -92.71 -0.78 11.49 16 37 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 38 H 0.10 5.77 6.19 -2.91 -0.02 5.75 16 39 H 0.28 14.27 8.30 -92.70 -0.77 13.50 16 40 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.11 4.45 6.68 -2.91 -0.02 4.43 16 Total: -1.00 -61.83 329.54 4.51 -57.32 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.22 Total: 33.64 kcal Atomic # 6 Polarization: -63.68 SS G_CDS: 3.94 Total: -59.74 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.68 Total: -73.95 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -61.83 4.51 -57.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717129432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.243 kcal (2) G-P(sol) polarization free energy of solvation -61.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds