Wall clock time and date at job start Mon Mar 30 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.54979 * 2 1 4 4 C 1.53072 * 117.51245 * 214.27339 * 2 1 3 5 5 C 1.53002 * 117.49723 * 145.66350 * 2 1 3 6 6 C 1.53002 * 117.50014 * 215.00334 * 5 2 1 7 7 C 1.53001 * 117.49689 * 0.02562 * 5 2 1 8 8 N 1.46495 * 109.47290 * 279.57400 * 7 5 2 9 9 C 1.38847 * 120.00050 * 184.26461 * 8 7 5 10 10 C 1.39574 * 119.84479 * 359.72885 * 9 8 7 11 11 C 1.36334 * 120.16382 * 180.27735 * 10 9 8 12 12 C 1.40891 * 119.83589 * 359.97438 * 11 10 9 13 13 C 1.41138 * 120.15521 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99967 * 155.03786 * 13 12 11 15 15 C 1.39867 * 119.99815 * 335.02984 * 13 12 11 16 16 N 1.30901 * 120.00200 * 342.77183 * 15 13 12 17 17 Si 1.86799 * 120.00004 * 162.76590 * 15 13 12 18 18 H 1.48503 * 109.46873 * 59.99866 * 17 15 13 19 19 H 1.48492 * 109.47200 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47202 * 300.00377 * 17 15 13 21 21 C 1.40882 * 119.69081 * 359.97438 * 12 11 10 22 22 C 1.36346 * 119.83640 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.47213 * 274.33572 * 1 2 3 24 24 H 1.09003 * 109.47163 * 34.32928 * 1 2 3 25 25 H 1.08998 * 109.47210 * 154.33263 * 1 2 3 26 26 H 1.08998 * 109.46674 * 205.66803 * 3 2 1 27 27 H 1.08999 * 109.46830 * 325.66712 * 3 2 1 28 28 H 1.08999 * 109.47424 * 85.66866 * 3 2 1 29 29 H 1.08999 * 117.49136 * 145.04212 * 4 2 1 30 30 H 1.08997 * 117.51215 * 359.97438 * 4 2 1 31 31 H 1.08994 * 109.47022 * 211.78760 * 6 5 2 32 32 H 1.09002 * 109.47026 * 331.78654 * 6 5 2 33 33 H 1.09000 * 109.46772 * 91.78687 * 6 5 2 34 34 H 1.09000 * 109.46931 * 159.57694 * 7 5 2 35 35 H 1.09003 * 109.47085 * 39.58127 * 7 5 2 36 36 H 0.97000 * 119.99677 * 4.27386 * 8 7 5 37 37 H 1.08004 * 119.91456 * 0.25795 * 10 9 8 38 38 H 1.08002 * 120.08323 * 180.02562 * 11 10 9 39 39 H 0.96999 * 120.00108 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.08210 * 179.97438 * 21 12 11 41 41 H 1.08000 * 119.91923 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2371 -1.1219 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 3.5487 -0.7752 1.4723 7 6 1.3587 -2.1559 1.4719 8 7 0.8898 -1.6095 2.7477 9 6 0.1459 -2.4026 3.6111 10 6 -0.1581 -3.7182 3.2577 11 6 -0.8929 -4.5009 4.0980 12 6 -1.3451 -3.9789 5.3261 13 6 -2.1058 -4.7834 6.2013 14 1 -2.1144 -4.5707 7.2601 15 6 -2.8486 -5.8561 5.6975 16 7 -3.1184 -5.9218 4.4182 17 14 -3.4557 -7.1950 6.8500 18 1 -4.3425 -6.5968 7.8800 19 1 -4.2119 -8.2105 6.0742 20 1 -2.2946 -7.8422 7.5120 21 6 -1.0335 -2.6505 5.6767 22 6 -0.2978 -1.8792 4.8265 23 1 -0.3634 0.0777 1.0248 24 1 -0.3634 0.8487 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1822 1.3086 -0.4451 27 1 1.5809 2.0742 -0.5796 28 1 2.2766 1.7417 1.0247 29 1 3.1723 -0.8761 -1.2675 30 1 1.6123 -1.8602 -1.2671 31 1 4.2004 -1.6489 1.4758 32 1 4.0404 0.0428 0.9459 33 1 3.3400 -0.4735 2.4987 34 1 1.9393 -3.0600 1.6553 35 1 0.5017 -2.3958 0.8424 36 1 1.0990 -0.6936 2.9893 37 1 0.1893 -4.1170 2.3160 38 1 -1.1271 -5.5188 3.8234 39 1 -3.6339 -6.6655 4.0688 40 1 -1.3773 -2.2438 6.6163 41 1 -0.0578 -0.8608 5.0942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717129433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:53 Heat of formation + Delta-G solvation = 30.998453 kcal Electronic energy + Delta-G solvation = -18998.854698 eV Core-core repulsion = 16264.407315 eV Total energy + Delta-G solvation = -2734.447383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.48803 -37.66838 -34.67649 -32.81030 -30.64793 -29.41669 -28.84777 -28.17654 -26.86764 -25.60888 -23.68745 -21.24541 -20.42341 -19.95674 -17.73067 -17.15804 -16.06560 -15.19414 -15.08408 -14.94778 -14.17156 -13.90216 -13.68773 -13.21099 -12.96308 -12.60039 -12.49801 -12.42003 -12.16628 -12.08269 -12.00113 -11.86792 -11.65311 -11.36821 -11.16239 -10.98407 -10.86966 -10.64003 -10.42087 -9.79977 -9.65390 -9.38235 -9.21134 -9.13897 -8.45180 -7.44644 -6.58971 -6.32032 -3.98969 2.96848 3.14404 3.16693 3.19957 3.40219 3.56249 4.08652 4.41749 4.62497 4.64716 4.81343 4.94271 5.05346 5.09755 5.48297 5.60042 5.67353 5.74147 5.80974 5.83547 5.86562 5.89314 5.93927 5.98047 6.08896 6.15369 6.23114 6.32232 6.32581 6.37757 6.45085 6.98542 6.99341 7.24760 7.40559 7.61176 7.73921 7.89926 8.19588 8.34853 8.55660 8.77103 8.86525 9.10477 9.20344 10.42141 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040642 B = 0.003976 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.776484 B = 7040.845886 C = 7200.566772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.112 4.112 4 C -0.164 4.164 5 C -0.129 4.129 6 C -0.113 4.113 7 C 0.178 3.822 8 N -0.755 5.755 9 C 0.097 3.903 10 C -0.166 4.166 11 C -0.123 4.123 12 C 0.073 3.927 13 C -0.469 4.469 14 H 0.071 0.929 15 C 0.075 3.925 16 N -0.810 5.810 17 Si 0.903 3.097 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.186 4.186 22 C -0.161 4.161 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.383 0.617 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.090 0.910 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 8.656 -8.869 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.119 4.119 3 C -0.169 4.169 4 C -0.202 4.202 5 C -0.130 4.130 6 C -0.170 4.170 7 C 0.052 3.948 8 N -0.390 5.390 9 C -0.001 4.001 10 C -0.188 4.188 11 C -0.143 4.143 12 C 0.070 3.930 13 C -0.500 4.500 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.437 5.437 17 Si 0.728 3.272 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.206 4.206 22 C -0.183 4.183 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.743 8.356 -9.169 15.177 hybrid contribution -0.310 -0.382 0.480 0.687 sum 8.433 7.974 -8.689 14.498 Atomic orbital electron populations 1.21351 0.91762 1.01446 1.02593 1.21635 0.94987 0.90968 1.04283 1.21339 0.99585 0.94252 1.01759 1.23301 1.02170 1.01403 0.93305 1.21856 0.98004 0.99998 0.93129 1.21277 0.94433 1.00993 1.00259 1.20434 0.94942 0.93900 0.85514 1.43778 1.62481 1.13933 1.18839 1.17354 0.99705 0.91630 0.91364 1.20086 1.05280 0.93418 0.99966 1.20936 0.98228 0.99492 0.95624 1.17477 0.91966 0.90716 0.92819 1.19331 1.24948 1.10627 0.95078 0.91060 1.25776 0.94693 0.98255 0.95274 1.69844 1.30784 1.29221 1.13881 0.86470 0.79232 0.80584 0.80921 1.19305 1.20616 1.19132 1.20541 1.05652 0.94563 0.99845 1.19794 1.05253 0.98246 0.95040 0.91434 0.92747 0.92463 0.92681 0.92390 0.92226 0.88961 0.88793 0.92349 0.92618 0.91964 0.93220 0.93611 0.78411 0.89537 0.86437 0.91344 0.89155 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 8.72 37.16 0.32 -1.06 16 2 C -0.12 -1.32 2.70 -154.47 -0.42 -1.74 16 3 C -0.11 -1.05 8.56 37.16 0.32 -0.73 16 4 C -0.16 -1.76 9.23 -26.69 -0.25 -2.00 16 5 C -0.13 -1.57 2.13 -154.50 -0.33 -1.89 16 6 C -0.11 -1.24 9.28 37.16 0.34 -0.90 16 7 C 0.18 2.73 4.17 -4.04 -0.02 2.71 16 8 N -0.75 -13.20 5.41 -58.50 -0.32 -13.52 16 9 C 0.10 2.13 6.67 -83.69 -0.56 1.57 16 10 C -0.17 -3.94 9.21 -39.77 -0.37 -4.31 16 11 C -0.12 -3.28 8.63 -39.26 -0.34 -3.61 16 12 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 13 C -0.47 -12.94 9.03 -37.87 -0.34 -13.28 16 14 H 0.07 1.90 7.90 -52.49 -0.41 1.48 16 15 C 0.07 1.96 5.14 -17.34 -0.09 1.87 16 16 N -0.81 -21.82 10.94 55.54 0.61 -21.21 16 17 Si 0.90 19.51 29.59 -169.99 -5.03 14.48 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.19 -4.68 9.74 -39.26 -0.38 -5.06 16 22 C -0.16 -3.67 9.82 -39.77 -0.39 -4.06 16 23 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 24 H 0.05 0.57 7.92 -51.93 -0.41 0.16 16 25 H 0.06 0.72 7.27 -51.93 -0.38 0.34 16 26 H 0.05 0.47 7.22 -51.93 -0.37 0.09 16 27 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.53 6.50 -51.93 -0.34 0.19 16 33 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 34 H 0.05 0.81 7.71 -51.93 -0.40 0.41 16 35 H 0.05 0.75 6.89 -51.93 -0.36 0.39 16 36 H 0.38 6.15 8.12 -40.82 -0.33 5.82 16 37 H 0.09 1.90 6.67 -52.48 -0.35 1.55 16 38 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 39 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 41 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -27.89 328.69 -9.44 -37.33 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.57 Total: 9.05 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -3.09 Total: -31.08 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.29 Total: -34.73 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.89 -9.44 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717129433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.329 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds