Wall clock time and date at job start Mon Mar 30 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.54979 * 2 1 4 4 C 1.53072 * 117.51245 * 214.27339 * 2 1 3 5 5 C 1.53002 * 117.49723 * 145.66350 * 2 1 3 6 6 C 1.53002 * 117.50014 * 215.00334 * 5 2 1 7 7 C 1.53001 * 117.49689 * 0.02562 * 5 2 1 8 8 N 1.46495 * 109.47290 * 279.57400 * 7 5 2 9 9 C 1.38847 * 120.00050 * 184.26461 * 8 7 5 10 10 C 1.39574 * 119.84479 * 359.72885 * 9 8 7 11 11 C 1.36334 * 120.16382 * 180.27735 * 10 9 8 12 12 C 1.40891 * 119.83589 * 359.97438 * 11 10 9 13 13 C 1.41138 * 120.15521 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99967 * 155.03786 * 13 12 11 15 15 C 1.39867 * 119.99815 * 335.02984 * 13 12 11 16 16 N 1.30901 * 120.00200 * 342.77183 * 15 13 12 17 17 Si 1.86799 * 120.00004 * 162.76590 * 15 13 12 18 18 H 1.48503 * 109.46873 * 59.99866 * 17 15 13 19 19 H 1.48492 * 109.47200 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47202 * 300.00377 * 17 15 13 21 21 C 1.40882 * 119.69081 * 359.97438 * 12 11 10 22 22 C 1.36346 * 119.83640 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.47213 * 274.33572 * 1 2 3 24 24 H 1.09003 * 109.47163 * 34.32928 * 1 2 3 25 25 H 1.08998 * 109.47210 * 154.33263 * 1 2 3 26 26 H 1.08998 * 109.46674 * 205.66803 * 3 2 1 27 27 H 1.08999 * 109.46830 * 325.66712 * 3 2 1 28 28 H 1.08999 * 109.47424 * 85.66866 * 3 2 1 29 29 H 1.08999 * 117.49136 * 145.04212 * 4 2 1 30 30 H 1.08997 * 117.51215 * 359.97438 * 4 2 1 31 31 H 1.08994 * 109.47022 * 211.78760 * 6 5 2 32 32 H 1.09002 * 109.47026 * 331.78654 * 6 5 2 33 33 H 1.09000 * 109.46772 * 91.78687 * 6 5 2 34 34 H 1.09000 * 109.46931 * 159.57694 * 7 5 2 35 35 H 1.09003 * 109.47085 * 39.58127 * 7 5 2 36 36 H 0.97000 * 119.99677 * 4.27386 * 8 7 5 37 37 H 1.08004 * 119.91456 * 0.25795 * 10 9 8 38 38 H 1.08002 * 120.08323 * 180.02562 * 11 10 9 39 39 H 0.96999 * 120.00108 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.08210 * 179.97438 * 21 12 11 41 41 H 1.08000 * 119.91923 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2371 -1.1219 -0.7645 5 6 2.2364 -1.1207 0.7655 6 6 3.5487 -0.7752 1.4723 7 6 1.3587 -2.1559 1.4719 8 7 0.8898 -1.6095 2.7477 9 6 0.1459 -2.4026 3.6111 10 6 -0.1581 -3.7182 3.2577 11 6 -0.8929 -4.5009 4.0980 12 6 -1.3451 -3.9789 5.3261 13 6 -2.1058 -4.7834 6.2013 14 1 -2.1144 -4.5707 7.2601 15 6 -2.8486 -5.8561 5.6975 16 7 -3.1184 -5.9218 4.4182 17 14 -3.4557 -7.1950 6.8500 18 1 -4.3425 -6.5968 7.8800 19 1 -4.2119 -8.2105 6.0742 20 1 -2.2946 -7.8422 7.5120 21 6 -1.0335 -2.6505 5.6767 22 6 -0.2978 -1.8792 4.8265 23 1 -0.3634 0.0777 1.0248 24 1 -0.3634 0.8487 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1822 1.3086 -0.4451 27 1 1.5809 2.0742 -0.5796 28 1 2.2766 1.7417 1.0247 29 1 3.1723 -0.8761 -1.2675 30 1 1.6123 -1.8602 -1.2671 31 1 4.2004 -1.6489 1.4758 32 1 4.0404 0.0428 0.9459 33 1 3.3400 -0.4735 2.4987 34 1 1.9393 -3.0600 1.6553 35 1 0.5017 -2.3958 0.8424 36 1 1.0990 -0.6936 2.9893 37 1 0.1893 -4.1170 2.3160 38 1 -1.1271 -5.5188 3.8234 39 1 -3.6339 -6.6655 4.0688 40 1 -1.3773 -2.2438 6.6163 41 1 -0.0578 -0.8608 5.0942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717129433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:53 Heat of formation + Delta-G solvation = 17.724282 kcal Electronic energy + Delta-G solvation = -18999.430309 eV Core-core repulsion = 16264.407315 eV Total energy + Delta-G solvation = -2735.022994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.55388 -39.42755 -36.39009 -34.59914 -31.75453 -31.34431 -30.45229 -29.11523 -27.92958 -27.01404 -25.41709 -23.02248 -21.85111 -21.39254 -19.14376 -18.81347 -17.67118 -16.81028 -16.46050 -16.12945 -15.71630 -15.31062 -14.78651 -14.50173 -14.38976 -14.26959 -13.90048 -13.78553 -13.53216 -13.30041 -13.11307 -12.95895 -12.85146 -12.76232 -12.72869 -12.60654 -12.26608 -12.24585 -11.66822 -11.56920 -11.19057 -11.06060 -10.67458 -10.38305 -10.12070 -9.40079 -8.53261 -8.13596 -5.99889 1.12187 1.19579 1.40050 1.51153 1.60563 2.27883 2.55769 2.85801 3.12375 3.69737 3.74126 3.86281 3.95478 4.08539 4.21352 4.44474 4.50647 4.57833 4.73274 4.78683 4.84519 4.90485 4.92609 4.99194 5.04048 5.06719 5.07865 5.12419 5.15276 5.21862 5.28609 5.33490 5.39763 5.46715 5.53071 5.69700 5.81457 5.97496 6.19553 6.40302 6.68671 6.88744 7.09310 7.16410 7.34624 8.49589 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.040642 B = 0.003976 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.776484 B = 7040.845886 C = 7200.566772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.109 4.109 7 C 0.177 3.823 8 N -0.741 5.741 9 C 0.117 3.883 10 C -0.177 4.177 11 C -0.142 4.142 12 C 0.034 3.966 13 C -0.508 4.508 14 H 0.068 0.932 15 C 0.032 3.968 16 N -0.844 5.844 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.270 1.270 20 H -0.263 1.263 21 C -0.194 4.194 22 C -0.167 4.167 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.395 0.605 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 10.019 -9.721 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.116 4.116 3 C -0.167 4.167 4 C -0.191 4.191 5 C -0.140 4.140 6 C -0.166 4.166 7 C 0.052 3.948 8 N -0.375 5.375 9 C 0.017 3.983 10 C -0.199 4.199 11 C -0.162 4.162 12 C 0.031 3.969 13 C -0.539 4.539 14 H 0.086 0.914 15 C -0.180 4.180 16 N -0.472 5.472 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.195 1.195 20 H -0.188 1.188 21 C -0.214 4.214 22 C -0.189 4.189 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.229 0.771 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.008 9.759 -10.045 17.213 hybrid contribution -0.616 -0.667 0.624 1.102 sum 9.392 9.092 -9.421 16.113 Atomic orbital electron populations 1.21337 0.92790 1.01608 1.01454 1.21709 0.94301 0.91961 1.03643 1.21353 1.00283 0.92968 1.02116 1.23387 1.02872 1.00805 0.92002 1.21734 0.98195 0.99999 0.94025 1.21259 0.93769 1.01676 0.99861 1.20485 0.95023 0.94850 0.84447 1.43790 1.60960 1.13955 1.18800 1.17451 0.98177 0.91200 0.91480 1.20213 1.05275 0.94220 1.00201 1.20856 0.99756 0.99181 0.96427 1.17800 0.93392 0.92038 0.93642 1.19579 1.26633 1.12642 0.95078 0.91396 1.26608 0.94421 1.00026 0.96928 1.69915 1.31576 1.30106 1.15603 0.85343 0.78733 0.77413 0.78678 1.18600 1.19471 1.18783 1.20759 1.05859 0.94169 1.00602 1.20085 1.04553 0.99468 0.94778 0.93401 0.91172 0.93563 0.91299 0.91553 0.92228 0.86889 0.89125 0.92483 0.90550 0.92828 0.94172 0.94621 0.77082 0.88209 0.88422 0.90820 0.88509 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 8.72 71.98 0.63 -1.95 16 2 C -0.12 -2.27 2.70 -52.16 -0.14 -2.41 16 3 C -0.11 -1.67 8.56 71.98 0.62 -1.06 16 4 C -0.15 -2.84 9.23 30.62 0.28 -2.56 16 5 C -0.14 -3.05 2.13 -52.18 -0.11 -3.16 16 6 C -0.11 -2.09 9.28 71.98 0.67 -1.42 16 7 C 0.18 5.23 4.17 86.38 0.36 5.59 16 8 N -0.74 -24.82 5.41 -338.99 -1.83 -26.66 16 9 C 0.12 5.05 6.67 38.68 0.26 5.31 16 10 C -0.18 -8.55 9.21 22.15 0.20 -8.35 16 11 C -0.14 -7.87 8.63 22.48 0.19 -7.68 16 12 C 0.03 1.94 5.57 -21.27 -0.12 1.82 16 13 C -0.51 -29.11 9.03 23.38 0.21 -28.90 16 14 H 0.07 3.76 7.90 -2.91 -0.02 3.74 16 15 C 0.03 1.71 5.14 85.23 0.44 2.14 16 16 N -0.84 -47.00 10.94 21.82 0.24 -46.76 16 17 Si 0.98 40.79 29.59 68.60 2.03 42.82 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 C -0.19 -9.89 9.74 22.48 0.22 -9.67 16 22 C -0.17 -7.44 9.82 22.15 0.22 -7.22 16 23 H 0.05 1.25 8.01 -2.38 -0.02 1.24 16 24 H 0.07 1.33 7.92 -2.39 -0.02 1.31 16 25 H 0.05 1.12 7.27 -2.39 -0.02 1.10 16 26 H 0.07 0.87 7.22 -2.39 -0.02 0.85 16 27 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 1.67 8.05 -2.39 -0.02 1.65 16 30 H 0.09 1.76 8.05 -2.39 -0.02 1.74 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.16 6.50 -2.39 -0.02 1.14 16 33 H 0.05 1.12 7.72 -2.39 -0.02 1.10 16 34 H 0.04 1.28 7.71 -2.39 -0.02 1.26 16 35 H 0.04 1.14 6.89 -2.39 -0.02 1.13 16 36 H 0.39 11.77 8.12 -92.71 -0.75 11.02 16 37 H 0.10 4.44 6.67 -2.91 -0.02 4.43 16 38 H 0.10 5.70 6.16 -2.91 -0.02 5.69 16 39 H 0.28 14.32 8.30 -92.71 -0.77 13.55 16 40 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -61.72 328.69 4.61 -57.11 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.25 Total: 33.00 kcal Atomic # 6 Polarization: -63.43 SS G_CDS: 3.93 Total: -59.50 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.60 Total: -73.42 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -61.72 4.61 -57.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717129433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.831 kcal (2) G-P(sol) polarization free energy of solvation -61.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds