Wall clock time and date at job start Mon Mar 30 2020 07:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47102 * 240.00213 * 3 2 1 5 5 H 1.48497 * 109.46844 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46821 * 119.99936 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 197.95225 * 7 2 1 9 9 C 1.41133 * 119.99869 * 17.94535 * 7 2 1 10 10 C 1.40882 * 120.15377 * 204.60464 * 9 7 2 11 11 C 1.36345 * 119.83740 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.15957 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84267 * 179.97438 * 12 11 10 14 14 C 1.46504 * 120.00080 * 180.27567 * 13 12 11 15 15 C 1.53002 * 109.46876 * 179.72624 * 14 13 12 16 16 C 1.52997 * 109.46686 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47205 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47205 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.49573 * 243.74486 * 18 17 16 20 20 C 1.53000 * 117.49879 * 175.08423 * 18 17 16 21 21 C 1.39570 * 120.31425 * 0.25658 * 12 11 10 22 22 C 1.36341 * 120.16056 * 359.48108 * 21 12 11 23 23 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.08733 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.92264 * 179.97438 * 11 10 9 26 26 H 0.97001 * 120.00214 * 359.97438 * 13 12 11 27 27 H 1.08995 * 109.46849 * 299.72365 * 14 13 12 28 28 H 1.08995 * 109.46874 * 59.72266 * 14 13 12 29 29 H 1.09003 * 109.47112 * 299.99212 * 15 14 13 30 30 H 1.08995 * 109.47661 * 60.00125 * 15 14 13 31 31 H 1.09003 * 109.47359 * 299.99635 * 16 15 14 32 32 H 1.09000 * 109.47863 * 59.99380 * 16 15 14 33 33 H 1.09005 * 109.46314 * 299.99301 * 17 16 15 34 34 H 1.08994 * 109.47057 * 59.99332 * 17 16 15 35 35 H 1.09001 * 115.55395 * 29.41115 * 18 17 16 36 36 H 1.08999 * 117.49833 * 359.97438 * 19 18 17 37 37 H 1.08994 * 117.50094 * 145.02270 * 19 18 17 38 38 H 1.08998 * 117.50358 * 214.97507 * 20 18 17 39 39 H 1.09002 * 117.50070 * 0.02562 * 20 18 17 40 40 H 1.07995 * 119.91639 * 179.72755 * 21 12 11 41 41 H 1.07997 * 120.07983 * 180.23327 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2782 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0489 -1.2343 0.2878 9 6 1.3541 -2.4037 -0.3777 10 6 1.8265 -3.6473 0.0861 11 6 1.1898 -4.7952 -0.2827 12 6 0.0723 -4.7402 -1.1171 13 7 -0.5707 -5.9133 -1.4890 14 6 -1.7404 -5.8601 -2.3696 15 6 -2.2498 -7.2796 -2.6271 16 6 -3.4709 -7.2240 -3.5472 17 6 -3.9809 -8.6435 -3.8043 18 6 -5.2024 -8.5878 -4.7239 19 6 -6.5369 -9.0752 -4.1560 20 6 -5.7931 -9.9182 -5.1950 21 6 -0.3983 -3.5121 -1.5842 22 6 0.2252 -2.3558 -1.2192 23 1 -0.4850 0.8401 0.0004 24 1 2.6908 -3.6914 0.7321 25 1 1.5510 -5.7493 0.0717 26 1 -0.2429 -6.7684 -1.1693 27 1 -2.5261 -5.2726 -1.8947 28 1 -1.4618 -5.3967 -3.3159 29 1 -1.4640 -7.8671 -3.1020 30 1 -2.5284 -7.7430 -1.6807 31 1 -4.2569 -6.6364 -3.0728 32 1 -3.1921 -6.7607 -4.4936 33 1 -3.1950 -9.2314 -4.2786 34 1 -4.2598 -9.1063 -2.8578 35 1 -5.2280 -7.7506 -5.4215 36 1 -6.5445 -9.4358 -3.1275 37 1 -7.4404 -8.5590 -4.4803 38 1 -6.2078 -9.9563 -6.2023 39 1 -5.3119 -10.8331 -4.8495 40 1 -1.2609 -3.4773 -2.2331 41 1 -0.1424 -1.4060 -1.5784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720129139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:34 Heat of formation + Delta-G solvation = 20.814851 kcal Electronic energy + Delta-G solvation = -17865.155945 eV Core-core repulsion = 15130.266968 eV Total energy + Delta-G solvation = -2734.888977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.21965 -37.83824 -35.82053 -33.93339 -32.55497 -29.54602 -29.40061 -27.66573 -24.62393 -23.26276 -22.65402 -21.63014 -20.72500 -20.44895 -19.77492 -17.16747 -16.06026 -15.99887 -15.54578 -14.98676 -14.71772 -14.54894 -13.83296 -13.76356 -12.85978 -12.74998 -12.41629 -12.24778 -12.09661 -11.95175 -11.80640 -11.59959 -11.28259 -11.10769 -11.05915 -10.98168 -10.82086 -10.67857 -10.39499 -10.31500 -10.08500 -9.67133 -9.24597 -9.17567 -8.48229 -7.45401 -6.60664 -6.34496 -3.99595 2.96171 3.13744 3.16267 3.19559 3.39640 3.52429 4.07940 4.20220 4.52510 4.65092 4.66692 4.80050 4.92756 5.00464 5.15067 5.31430 5.35351 5.47612 5.59308 5.67905 5.73948 5.79608 5.82585 5.85479 5.95086 6.01516 6.13073 6.31045 6.31595 6.34894 6.38510 6.97910 6.98524 7.23993 7.39652 7.59858 7.73000 7.88680 8.18772 8.33559 8.54045 8.75515 8.84567 9.09506 9.19330 10.40917 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041075 B = 0.002828 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.518488 B = 9898.355019 C =10426.382583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.187 4.187 11 C -0.161 4.161 12 C 0.092 3.908 13 N -0.764 5.764 14 C 0.138 3.862 15 C -0.128 4.128 16 C -0.113 4.113 17 C -0.088 4.088 18 C -0.151 4.151 19 C -0.182 4.182 20 C -0.185 4.185 21 C -0.164 4.164 22 C -0.125 4.125 23 H 0.276 0.724 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.383 0.617 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.190 -13.610 -7.621 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.207 4.207 11 C -0.183 4.183 12 C -0.005 4.005 13 N -0.400 5.400 14 C 0.013 3.987 15 C -0.166 4.166 16 C -0.151 4.151 17 C -0.126 4.126 18 C -0.170 4.170 19 C -0.219 4.219 20 C -0.222 4.222 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.215 0.785 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.530 -13.335 -7.711 18.114 hybrid contribution 0.370 0.480 0.175 0.631 sum -9.160 -12.855 -7.536 17.492 Atomic orbital electron populations 1.69851 1.07355 1.28666 1.37699 1.25798 0.94658 1.00863 0.92765 0.86462 0.80123 0.80866 0.79713 1.19104 1.20613 1.19291 1.19328 0.97881 0.91386 1.41277 0.91004 1.17492 0.92477 0.91988 0.91018 1.20542 1.02693 0.92626 1.04850 1.19813 0.97959 0.97043 1.03465 1.17370 0.95653 0.85751 1.01703 1.43884 1.33166 1.05755 1.57145 1.20997 0.88499 0.95463 0.93769 1.21754 0.97634 0.97416 0.99835 1.21481 0.97313 0.96501 0.99842 1.21190 0.95602 0.97505 0.98286 1.22396 0.94395 0.97914 1.02255 1.23048 0.95796 1.04246 0.98852 1.22976 1.04728 0.95213 0.99297 1.20101 1.01671 0.91938 1.04913 1.20938 0.98198 0.96429 0.98880 0.91303 0.89074 0.89643 0.78500 0.93617 0.93681 0.91802 0.91804 0.91614 0.91694 0.91649 0.91898 0.87780 0.88830 0.89007 0.89011 0.88916 0.89427 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.82 10.96 55.54 0.61 -21.21 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.50 29.60 -169.99 -5.03 14.47 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.47 -12.92 9.03 -37.87 -0.34 -13.26 16 8 H 0.07 1.91 7.91 -52.48 -0.41 1.50 16 9 C 0.07 2.02 5.57 -106.80 -0.60 1.43 16 10 C -0.19 -4.74 9.74 -39.26 -0.38 -5.13 16 11 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 12 C 0.09 2.08 6.67 -83.69 -0.56 1.52 16 13 N -0.76 -13.72 5.70 -58.50 -0.33 -14.06 16 14 C 0.14 2.10 4.89 -4.04 -0.02 2.08 16 15 C -0.13 -1.45 5.33 -26.73 -0.14 -1.59 16 16 C -0.11 -1.11 5.17 -26.73 -0.14 -1.24 16 17 C -0.09 -0.76 5.50 -26.73 -0.15 -0.91 16 18 C -0.15 -1.25 5.73 -90.62 -0.52 -1.77 16 19 C -0.18 -1.41 10.18 -26.69 -0.27 -1.68 16 20 C -0.19 -1.37 10.25 -26.69 -0.27 -1.65 16 21 C -0.16 -3.97 9.23 -39.77 -0.37 -4.34 16 22 C -0.12 -3.35 8.64 -39.26 -0.34 -3.68 16 23 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 24 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 25 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.38 6.09 8.47 -40.82 -0.35 5.74 16 27 H 0.05 0.74 7.94 -51.93 -0.41 0.33 16 28 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.94 6.68 -52.49 -0.35 1.59 16 41 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -28.60 337.06 -11.12 -39.71 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.87 Total: 8.47 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -4.58 Total: -32.47 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.28 Total: -35.26 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.60 -11.12 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720129139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.529 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds