Wall clock time and date at job start Mon Mar 30 2020 07:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86802 * 120.00390 * 2 1 4 4 H 1.48498 * 109.47102 * 240.00213 * 3 2 1 5 5 H 1.48497 * 109.46844 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46821 * 119.99936 * 3 2 1 7 7 C 1.39875 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99687 * 197.95225 * 7 2 1 9 9 C 1.41133 * 119.99869 * 17.94535 * 7 2 1 10 10 C 1.40882 * 120.15377 * 204.60464 * 9 7 2 11 11 C 1.36345 * 119.83740 * 180.02562 * 10 9 7 12 12 C 1.39569 * 120.15957 * 359.97438 * 11 10 9 13 13 N 1.38853 * 119.84267 * 179.97438 * 12 11 10 14 14 C 1.46504 * 120.00080 * 180.27567 * 13 12 11 15 15 C 1.53002 * 109.46876 * 179.72624 * 14 13 12 16 16 C 1.52997 * 109.46686 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47205 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47205 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.49573 * 243.74486 * 18 17 16 20 20 C 1.53000 * 117.49879 * 175.08423 * 18 17 16 21 21 C 1.39570 * 120.31425 * 0.25658 * 12 11 10 22 22 C 1.36341 * 120.16056 * 359.48108 * 21 12 11 23 23 H 0.97002 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.08733 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.92264 * 179.97438 * 11 10 9 26 26 H 0.97001 * 120.00214 * 359.97438 * 13 12 11 27 27 H 1.08995 * 109.46849 * 299.72365 * 14 13 12 28 28 H 1.08995 * 109.46874 * 59.72266 * 14 13 12 29 29 H 1.09003 * 109.47112 * 299.99212 * 15 14 13 30 30 H 1.08995 * 109.47661 * 60.00125 * 15 14 13 31 31 H 1.09003 * 109.47359 * 299.99635 * 16 15 14 32 32 H 1.09000 * 109.47863 * 59.99380 * 16 15 14 33 33 H 1.09005 * 109.46314 * 299.99301 * 17 16 15 34 34 H 1.08994 * 109.47057 * 59.99332 * 17 16 15 35 35 H 1.09001 * 115.55395 * 29.41115 * 18 17 16 36 36 H 1.08999 * 117.49833 * 359.97438 * 19 18 17 37 37 H 1.08994 * 117.50094 * 145.02270 * 19 18 17 38 38 H 1.08998 * 117.50358 * 214.97507 * 20 18 17 39 39 H 1.09002 * 117.50070 * 0.02562 * 20 18 17 40 40 H 1.07995 * 119.91639 * 179.72755 * 21 12 11 41 41 H 1.07997 * 120.07983 * 180.23327 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2782 2.7464 0.0006 6 1 3.0968 1.6962 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0489 -1.2343 0.2878 9 6 1.3541 -2.4037 -0.3777 10 6 1.8265 -3.6473 0.0861 11 6 1.1898 -4.7952 -0.2827 12 6 0.0723 -4.7402 -1.1171 13 7 -0.5707 -5.9133 -1.4890 14 6 -1.7404 -5.8601 -2.3696 15 6 -2.2498 -7.2796 -2.6271 16 6 -3.4709 -7.2240 -3.5472 17 6 -3.9809 -8.6435 -3.8043 18 6 -5.2024 -8.5878 -4.7239 19 6 -6.5369 -9.0752 -4.1560 20 6 -5.7931 -9.9182 -5.1950 21 6 -0.3983 -3.5121 -1.5842 22 6 0.2252 -2.3558 -1.2192 23 1 -0.4850 0.8401 0.0004 24 1 2.6908 -3.6914 0.7321 25 1 1.5510 -5.7493 0.0717 26 1 -0.2429 -6.7684 -1.1693 27 1 -2.5261 -5.2726 -1.8947 28 1 -1.4618 -5.3967 -3.3159 29 1 -1.4640 -7.8671 -3.1020 30 1 -2.5284 -7.7430 -1.6807 31 1 -4.2569 -6.6364 -3.0728 32 1 -3.1921 -6.7607 -4.4936 33 1 -3.1950 -9.2314 -4.2786 34 1 -4.2598 -9.1063 -2.8578 35 1 -5.2280 -7.7506 -5.4215 36 1 -6.5445 -9.4358 -3.1275 37 1 -7.4404 -8.5590 -4.4803 38 1 -6.2078 -9.9563 -6.2023 39 1 -5.3119 -10.8331 -4.8495 40 1 -1.2609 -3.4773 -2.2331 41 1 -0.1424 -1.4060 -1.5784 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720129139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:33 Heat of formation + Delta-G solvation = 7.725975 kcal Electronic energy + Delta-G solvation = -17865.723521 eV Core-core repulsion = 15130.266968 eV Total energy + Delta-G solvation = -2735.456553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81101 -38.71597 -37.20725 -35.46171 -34.07079 -31.35362 -31.02509 -29.10259 -26.26321 -24.64707 -23.26319 -23.05554 -21.95161 -21.68463 -21.12190 -19.14888 -17.73898 -16.84254 -16.78033 -16.50201 -16.11050 -15.61204 -15.25037 -14.81637 -14.54196 -14.44994 -13.95354 -13.63500 -13.45994 -13.27010 -12.96426 -12.78076 -12.72978 -12.48104 -12.34105 -12.23586 -12.04440 -11.86721 -11.60618 -11.55975 -11.17590 -11.03967 -10.99475 -10.71084 -10.28402 -9.41009 -8.54656 -8.16350 -6.00430 1.11265 1.18625 1.40187 1.51364 1.60436 2.27681 2.84339 2.88094 2.96536 3.71823 3.84895 4.00032 4.03112 4.14174 4.18733 4.31716 4.43793 4.51040 4.51290 4.60576 4.75300 4.80399 4.90849 4.94356 5.02591 5.04920 5.10035 5.11159 5.16232 5.27206 5.27972 5.33239 5.43242 5.46131 5.51140 5.69204 5.80696 5.96774 6.18895 6.39221 6.67257 6.87410 7.08413 7.16087 7.33825 8.48633 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.041075 B = 0.002828 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.518488 B = 9898.355019 C =10426.382583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.030 3.970 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.196 4.196 11 C -0.166 4.166 12 C 0.109 3.891 13 N -0.754 5.754 14 C 0.134 3.866 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.083 4.083 18 C -0.162 4.162 19 C -0.186 4.186 20 C -0.182 4.182 21 C -0.176 4.176 22 C -0.145 4.145 23 H 0.282 0.718 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.397 0.603 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -15.078 -8.060 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.030 3.970 10 C -0.216 4.216 11 C -0.189 4.189 12 C 0.009 3.991 13 N -0.389 5.389 14 C 0.009 3.991 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.120 4.120 18 C -0.181 4.181 19 C -0.223 4.223 20 C -0.218 4.218 21 C -0.198 4.198 22 C -0.165 4.165 23 H 0.092 0.908 24 H 0.116 0.884 25 H 0.137 0.863 26 H 0.232 0.768 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.855 -14.858 -8.158 19.607 hybrid contribution 0.386 0.753 0.278 0.890 sum -9.469 -14.105 -7.881 18.728 Atomic orbital electron populations 1.69919 1.08800 1.29861 1.38454 1.26649 0.95481 1.04198 0.91854 0.85324 0.78736 0.76177 0.79819 1.18749 1.19469 1.18575 1.19568 0.98042 0.92733 1.43359 0.91310 1.17838 0.93598 0.93148 0.92372 1.20772 1.03102 0.92839 1.04883 1.20129 0.97812 0.97735 1.03186 1.17498 0.94957 0.86735 0.99864 1.43960 1.33273 1.04898 1.56762 1.21165 0.87133 0.98079 0.92702 1.21653 0.98338 0.94694 1.00641 1.21437 0.96503 0.97408 0.99388 1.21122 0.95839 0.96526 0.98535 1.22410 0.94575 0.98508 1.02570 1.23120 0.95736 1.04360 0.99125 1.23052 1.04233 0.94933 0.99630 1.20253 1.02173 0.91974 1.05442 1.20874 0.99004 0.96680 0.99944 0.90750 0.88368 0.86307 0.76846 0.94563 0.94149 0.90825 0.91118 0.92056 0.91705 0.91212 0.91675 0.87971 0.88677 0.88609 0.88317 0.88432 0.87931 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.81 10.96 21.82 0.24 -46.57 16 2 C 0.03 1.61 5.13 85.23 0.44 2.04 16 3 Si 0.98 40.64 29.60 68.60 2.03 42.67 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.51 -28.90 9.03 23.38 0.21 -28.69 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.77 16 9 C 0.03 1.90 5.57 -21.27 -0.12 1.78 16 10 C -0.20 -10.00 9.74 22.48 0.22 -9.78 16 11 C -0.17 -7.45 9.82 22.15 0.22 -7.23 16 12 C 0.11 4.76 6.67 38.67 0.26 5.02 16 13 N -0.75 -25.24 5.70 -338.99 -1.93 -27.17 16 14 C 0.13 3.80 4.89 86.38 0.42 4.22 16 15 C -0.12 -2.30 5.33 30.59 0.16 -2.13 16 16 C -0.11 -1.91 5.17 30.59 0.16 -1.75 16 17 C -0.08 -1.24 5.50 30.59 0.17 -1.07 16 18 C -0.16 -2.39 5.73 -10.79 -0.06 -2.45 16 19 C -0.19 -2.56 10.18 30.62 0.31 -2.25 16 20 C -0.18 -2.34 10.25 30.62 0.31 -2.03 16 21 C -0.18 -8.54 9.23 22.15 0.20 -8.34 16 22 C -0.14 -8.04 8.64 22.48 0.19 -7.84 16 23 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 24 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 25 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 26 H 0.40 11.28 8.47 -92.71 -0.79 10.50 16 27 H 0.04 1.12 7.94 -2.39 -0.02 1.10 16 28 H 0.04 1.21 7.91 -2.39 -0.02 1.19 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 4.54 6.68 -2.91 -0.02 4.52 16 41 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -62.42 337.06 3.64 -58.77 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.21 Total: 32.81 kcal Atomic # 6 Polarization: -63.61 SS G_CDS: 3.10 Total: -60.51 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.69 Total: -73.74 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -62.42 3.64 -58.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720129139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.497 kcal (2) G-P(sol) polarization free energy of solvation -62.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds