Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38035 * 119.82666 * 2 1 4 4 C 1.38793 * 120.15488 * 180.23385 * 3 2 1 5 5 N 1.39321 * 120.09694 * 179.76381 * 4 3 2 6 6 C 1.46897 * 110.99671 * 63.34229 * 5 4 3 7 7 C 1.46898 * 111.00305 * 299.38793 * 5 4 3 8 8 H 1.08995 * 109.46900 * 62.80558 * 7 5 4 9 9 C 1.53002 * 109.47323 * 182.80822 * 7 5 4 10 10 C 1.50700 * 109.46726 * 302.80932 * 7 5 4 11 11 H 1.08001 * 120.00311 * 359.97438 * 10 7 5 12 12 C 1.37879 * 119.99805 * 179.72335 * 10 7 5 13 13 N 1.31516 * 120.00213 * 0.27636 * 12 10 7 14 14 Si 1.86798 * 120.00007 * 180.27232 * 12 10 7 15 15 H 1.48498 * 109.47361 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46936 * 120.00323 * 14 12 10 17 17 H 1.48504 * 109.47273 * 239.99816 * 14 12 10 18 18 C 1.40338 * 119.80564 * 359.48993 * 4 3 2 19 19 C 1.43202 * 120.17100 * 180.23419 * 18 4 3 20 20 N 4.81434 * 136.84456 * 359.97438 * 3 1 2 21 21 C 1.39698 * 119.65568 * 0.24903 * 18 4 3 22 22 C 1.38430 * 119.84067 * 0.02562 * 21 18 4 23 23 N 1.40020 * 119.90260 * 179.97438 * 22 21 18 24 24 H 1.08998 * 109.47057 * 270.27841 * 1 2 3 25 25 H 1.08991 * 109.46854 * 30.28010 * 1 2 3 26 26 H 1.09005 * 109.46893 * 150.27807 * 1 2 3 27 27 H 1.07996 * 119.91983 * 359.97254 * 3 2 1 28 28 H 1.09004 * 109.47303 * 296.04083 * 6 5 4 29 29 H 1.08996 * 109.47364 * 56.04816 * 6 5 4 30 30 H 1.09011 * 109.47261 * 176.04604 * 6 5 4 31 31 H 1.09002 * 109.46895 * 174.42284 * 9 7 5 32 32 H 1.08999 * 109.46828 * 294.42353 * 9 7 5 33 33 H 1.09000 * 109.46872 * 54.41983 * 9 7 5 34 34 H 0.97000 * 120.00275 * 180.02562 * 13 12 10 35 35 H 1.07999 * 120.08060 * 179.97438 * 21 18 4 36 36 H 0.97001 * 120.00223 * 0.02562 * 23 22 21 37 37 H 0.97001 * 119.99730 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1975 0.0000 4 6 3.5814 1.2055 -0.0049 5 7 4.2732 2.4148 -0.0099 6 6 4.0047 3.1798 1.2151 7 6 3.9462 3.2035 -1.2053 8 1 2.8857 3.4550 -1.1957 9 6 4.7753 4.4893 -1.2105 10 6 4.2603 2.3981 -2.4397 11 1 4.6630 1.4004 -2.3456 12 6 4.0288 2.9331 -3.6892 13 7 3.5389 4.1482 -3.8039 14 14 4.4111 1.9320 -5.2192 15 1 4.9486 0.6060 -4.8218 16 1 3.1689 1.7448 -6.0114 17 1 5.4188 2.6491 -6.0411 18 6 4.2860 -0.0082 0.0010 19 6 5.7180 -0.0091 0.0011 20 7 6.8540 -0.0099 0.0015 21 6 3.5831 -1.2155 0.0065 22 6 2.1988 -1.2066 0.0055 23 7 1.4930 -2.4159 0.0104 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8874 -0.5181 26 1 -0.3633 -0.8925 -0.5095 27 1 1.6494 2.1304 -0.0004 28 1 2.9489 3.4485 1.2517 29 1 4.2554 2.5727 2.0849 30 1 4.6105 4.0860 1.2178 31 1 4.6070 5.0264 -2.1440 32 1 4.4770 5.1174 -0.3711 33 1 5.8326 4.2402 -1.1201 34 1 3.3757 4.5244 -4.6829 35 1 4.1184 -2.1535 0.0106 36 1 1.9740 -3.2582 0.0149 37 1 0.5230 -2.4112 0.0102 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721071235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = 63.800006 kcal Electronic energy + Delta-G solvation = -19532.016294 eV Core-core repulsion = 16695.450949 eV Total energy + Delta-G solvation = -2836.565344 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.138 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76579 -37.11417 -35.84231 -33.67847 -32.51454 -32.29107 -29.26961 -27.82874 -27.17452 -25.43640 -24.20983 -22.42794 -21.31320 -19.39651 -18.38163 -17.04415 -16.36346 -15.47645 -15.08831 -14.70765 -14.37018 -14.01583 -13.74181 -13.47634 -13.15356 -12.89420 -12.65285 -12.40679 -12.20957 -11.90536 -11.80210 -11.75142 -11.62455 -11.09331 -10.96701 -10.66823 -10.63799 -10.44752 -10.24825 -9.94705 -9.73853 -8.93797 -8.43608 -8.33533 -7.44033 -7.05786 -6.00916 -4.04169 1.31099 1.94586 3.31199 3.39231 3.43890 3.46021 3.58022 4.00120 4.42563 4.42981 4.66587 4.83308 5.10827 5.25626 5.32282 5.50281 5.72639 5.79854 5.88750 5.93767 6.06492 6.17937 6.24721 6.39757 6.41577 6.55817 6.78724 6.89197 6.99742 7.05942 7.12712 7.41333 7.60997 7.76308 7.83110 7.89797 8.22254 8.25887 8.32147 8.53897 9.01921 9.60725 11.05581 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.015269 B = 0.008367 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.337981 B = 3345.585938 C = 3609.749079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.099 4.099 4 C 0.147 3.853 5 N -0.515 5.515 6 C 0.031 3.969 7 C 0.218 3.782 8 H 0.007 0.993 9 C -0.136 4.136 10 C -0.496 4.496 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.017 3.983 19 C 0.286 3.714 20 N -0.440 5.440 21 C -0.147 4.147 22 C 0.193 3.807 23 N -0.884 5.884 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.126 0.874 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.010 0.990 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.124 0.876 36 H 0.394 0.606 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -8.708 8.820 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.130 4.130 3 C -0.120 4.120 4 C 0.048 3.952 5 N -0.237 5.237 6 C -0.116 4.116 7 C 0.114 3.886 8 H 0.025 0.975 9 C -0.194 4.194 10 C -0.535 4.535 11 H 0.080 0.920 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.012 3.988 19 C -0.029 4.029 20 N -0.116 5.116 21 C -0.172 4.172 22 C 0.091 3.909 23 N -0.426 5.426 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.144 0.856 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.142 0.858 36 H 0.222 0.778 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.685 -8.589 8.656 13.455 hybrid contribution -1.249 -0.495 -1.083 1.726 sum -6.934 -9.084 7.574 13.710 Atomic orbital electron populations 1.20635 0.91590 1.02519 1.01589 1.19350 0.95570 0.91543 1.06536 1.21258 0.94212 0.97309 0.99211 1.18387 0.89618 0.90548 0.96666 1.59733 1.56616 1.03269 1.04059 1.22356 0.98870 0.98383 0.91974 1.19390 0.93933 0.90286 0.84969 0.97500 1.21868 0.98792 0.97674 1.01044 1.21123 1.41722 1.01005 0.89622 0.92048 1.24849 0.95203 0.94996 0.98873 1.69880 1.45223 1.14709 1.23473 0.86537 0.77913 0.80571 0.83104 1.19683 1.21071 1.21036 1.15711 0.84399 0.92946 1.05730 1.25302 0.92388 0.92139 0.93052 1.81060 1.12284 1.08882 1.09354 1.20260 0.91913 0.96578 1.08487 1.17178 0.90377 0.86161 0.97173 1.42439 1.08572 1.04731 1.86899 0.91717 0.91228 0.92293 0.85643 0.96034 0.92823 0.91119 0.89156 0.97129 0.94727 0.93052 0.85781 0.77816 0.77571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.56 36.01 0.34 -0.84 16 2 C -0.12 -1.81 5.90 -104.38 -0.62 -2.43 16 3 C -0.10 -1.72 8.26 -39.45 -0.33 -2.05 16 4 C 0.15 2.87 3.51 -83.46 -0.29 2.58 16 5 N -0.51 -10.97 3.98 -172.37 -0.69 -11.66 16 6 C 0.03 0.55 8.90 60.06 0.53 1.09 16 7 C 0.22 5.35 1.79 -68.86 -0.12 5.23 16 8 H 0.01 0.19 7.24 -51.93 -0.38 -0.18 16 9 C -0.14 -3.28 8.59 37.16 0.32 -2.96 16 10 C -0.50 -13.53 8.05 -34.44 -0.28 -13.81 16 11 H 0.06 1.74 6.99 -52.49 -0.37 1.37 16 12 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 13 N -0.89 -25.11 11.30 55.43 0.63 -24.48 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.02 0.32 5.39 -106.64 -0.57 -0.26 16 19 C 0.29 5.85 14.80 -22.47 -0.33 5.52 16 20 N -0.44 -9.60 18.54 41.84 0.78 -8.82 16 21 C -0.15 -2.22 9.60 -38.97 -0.37 -2.60 16 22 C 0.19 2.65 6.73 -83.73 -0.56 2.08 16 23 N -0.88 -8.52 9.00 32.42 0.29 -8.23 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 26 H 0.06 0.55 6.52 -51.93 -0.34 0.21 16 27 H 0.13 2.17 7.05 -52.49 -0.37 1.80 16 28 H 0.02 0.35 7.43 -51.93 -0.39 -0.03 16 29 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.07 1.24 6.41 -51.92 -0.33 0.90 16 31 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 32 H 0.01 0.21 6.70 -51.93 -0.35 -0.14 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.39 3.04 8.84 -40.82 -0.36 2.68 16 37 H 0.40 3.11 6.80 -40.82 -0.28 2.83 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -30.68 308.82 -6.44 -37.12 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.71 Total: 1.45 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.38 Total: -6.82 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 1.01 Total: -53.19 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.68 -6.44 -37.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721071235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.920 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds